Silkworm Genome Informatics Database

Gene

KWMTBOMO10978

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr18(-):8518773-8522931 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.386 Nuclear Reliability : 1.055 PlasmaMembrane Reliability : 1.07

CDS

ATGCTCACGAATCAATATACTCGTAGAGAATATCATAACAAAAGAATCAGATATAAATTCGTAATTACGCAACGCTATCCTGATCACACAGGAGCCAGTCACCGTCTACGCCCTAGACACGTCCTTACGGATCCATCAGATCCAATAACCTTTGCATTAGACGCCTTCAGCTCTAACACTAGAAGTGGCCTGGACGACTGCACCACCAGGGATGAGGTGACGGCGGCCGTCGCTGCCCAGGGCAAATGCGCACTGGAAAATGTTACAGTAGGCGAGCCGCGCCGCGGTTATACCGGGGCCAGCTCGGTATGGGTGCGTTGCCCGGTGGAAGCGGCCGCCTCCCTGGCTGCTCCTCCTCCCGGGAGACCTTCGGGAAATCCGGGCATGCTGCGCGTGGGCTGGATAGCGGCCCACGTGCACTTGCTTGAACCACGCGCCTGGCGATGCCTCCGGTGCTTTAGCACCGGACACGGCCTCGCCAGGTGCACCAGCTCGGTTGACCGCAGTGGTCTGTGTTTCCGCTGCGGCCAGCCGGGACATAAAGCGGCGTCCTGCACGGCTGCCCCGCATTGCGCTCTGTGTGCTGCGGCCGGGCGCAGGGCAAGCCACCGAACGGGAGGCAAGGCGTGCTTTTCGTCCGGTAATAATACCGAACGCAACCGGCGCCGCAAGTCAAAGCGTCGGCAAAACAGAAGGTTGGCCAGAGGAGCACTGGCCAACGCTGTAATCCCCGCTGCGGTGCCGGTGCCGGAGGGCGGGGGCAGTGGTGAAGGGGAGGGGGCGATGGATGACATGCTGTCTCAGAGCATGGCGGAGTGGTCCATAGATGTGGCTGTGGTCGCCGAGCCGTACTTCGTTCCCCCGGCAAATGATTGCTGGTTTGGGGACGATGGCGGCCTGGCGGCCATAGTCATAAGAAGAGACGCGGCGATCCCCCCCCTGGCGATGGTGACCAGGGGCCAAGGTTTCGTCGCGGTGCAGTTGGAAGGGACCGTCGTGATCGGGGCGTACTTCTCTCCAAACAGGCCTACTGTCGAGTTCGGGCATTTCCTGGGCGGGATCGGGGCGATTGCTCGCCGCCTCGCTCCCCGTCCAGTGATTCTCGCGGGGGACCTCAATGCGAAGTCTGTCGCATGGGGTTCCCCCCGCTCGGACGCTCGTGGTAGGCTGCTGGAGAGGTGGGCGAACGTGGCCGGCCTCTGTTTGTTGAATAGAGGTTCGGTTGCGACGTGCGTGCGGTGGCAGGGCGAGTCTATTGTGGACGTTACGTTCGCAAGCCCGGCCATCGCGCGCCGTATCCGCGACTGGAGGGTCTTGGAGGGGGCGGAGACACTGTCAGATCACCGATATATTCGGTTTGATCTCTCCGCCCGCTCCGCAGTCGCGGACGTCCACAGGGACCACCCCCATGGTGCGTCCCGGTCATTCCCCAAGTGGGCACTGAAGCGCCTGAATAAGGAGCTCCTGATGGAAGCCTCTATGGTGGCGGCGTGGGCGCCCATGCGTCCACACCCGGTCGAGGTCGAGGGCGAGGCAGGGTGGTTCCGGGACACGATGTGTCGCATTTGTGATGCGTCGATGCCCCGGATTGGCCCTCGACTTCCTAATCGCCAAGCGTACTGGTGGTCGCCCGAAATTGCGCAACTCCGCGTGGAGTGCGTTCGGGCGAGGCGCGAGTGCGCCAGGCATCGCCGCCGCCGCCTGCCGCGACGCAATGATCCGGTTGCATTCGCGGCGGAAGAGGTCCGGCTGCACGGCGCATTTCGCGTCGCGCAGAGGGCATTGCAGCTGGCCATCAGAAGAGCCAAGAACCAACACATGGAGGGTCTCTTGGAGACGCTGGATGAGGATCCGTGGGGGCGGCCCTATCATATGGTGCGCAATAAAATGCGCCCATGGGCCCCCCCGATCACGGAGCGTCTCCAGCCTCAGCAGCTGCGGGACATCGTCTCGGCGCTGTTCCCGCAGGAGCGGGATGGATTTATCGCTCCCGCTATGGACACGCCGCCGGAATACGACGGTGAAGTCCCTGCTGAGGTGCCCCATATAACGGGGGCGGAGCTCCGTGTGGCCGTACGCAAAATGTGCGCGAAGGACACTGCACCCGGCCCGGACGGCGTCCATGGTCGGGTTTGGGGCTTGGCTCTTGGTGCCCTGGGGGACCGACTCTTGAGGCTTTACAACTCCTGCCTCGAGTCGGGACGGTTTCCTTCATCGTGGAGGACGGGCAGACTCGTGCTGTTGAGAAAGGAGGGGCGCCCGGCGGATACCGCCGCCGGGTACCGTCCCATCGTGTTGCTGGATGAGGTGGGCAAGCTGCTGGAACGTATTCTGGCAGCCCGCATCATCCAGCATCTGGCCGGGGTGGGACCCGATCTGTCGGCGGAACAGTATGGCTTCCGAGAGGGCCGCTCAACCGTAGACGCGATCCTTCGCGTGCGGGCCCTCTCGGAGGAGGCCGTCTCCAGGGGCGGGGTGGCCCTGGCGGTATCACTCGATATCGCCAATGCGTTCAACACCCTGCCCTGGTCCGTGATAGGGGGGCGCTGGAAAGACACGGAGTGCCCCCCTACCTTCGCCGGCTGGCCCCGGAGAGTGCCACCTATCGATGCTCAAATCGTGGTTGGAGGCGTCCGTATTGGGGTCGGGGTGCAGTTGAAGTACCTCGGCCTCATTCTAGACAGTCGTTGGACCTTCCGTGCTCACTTTCAGAATCTGGTCCCTCGTTTGTTGGGGGTGGCCGGCGCGTTAAGCCGGCTTCTGCCCAACGTCGGGGGGCCTGACCAGGTGACGCGCCGTCTCTATACAGGGGTGGTGCGGTCAATGGCCCTATACGGGGCGCCCGTGTGGGGCCAGTCCCTGGCCGTGGGGGTAGCAAAGTTGCTGCAACGGCCGCAACGCACCATCGCGGTCAGGGTCATCCGCGGCTATCGCACCATCTCCTTCGAGGCGGCGTGTGTACTGGCTGGGACGCCGCCTTGGGTTCTGGAAGCGGAGGCGCTCGCCGCTGACTATCAGTGGCGGGCTGACTTTCGTGCCCGGGGCGTGGCGCGCCCCAGCCCCAGTGTGGTCAGAGCGCGGAGGGCCCAATCTCGGCGGTCCGTGCTGGAATCATGGTCCAGGCGGCTGGCCGATCCTTCGGCTGGTCGTAGGACCGTCGAGGCGATTCGCCCAGTCCTTGTGGACTGGGCGAATCGTGACAGAGGACGCCTCACTTTCCGGCTCACGCAGGTGCTCACTGGGCATGGTTGCTTCGGTGAGTTCCTGCACCGGATCAGAGCCGAGCCGACGGCAGAGTGCCACCATTGTGGTTGCGACTTGGACACGGCAGAGCACACGCTCGTTGCCTGCCCCGCATGGGAGGGGTGGCGCCGTGTCCTCGTCGCAAAAATAGGAAACGACTTGTCGTTGCCGAGTGTTGTGGCATCGATGCTCGGCGACGACGAGTCGTGGAAGGCGATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGCGTGAGAGACGCGCAAGCCCGCCGCCGTCGAGCGGGGGCCAGGGAGGCGGATATCGCCCAAGCCCTGGCCCTCTAA

Protein

MLTNQYTRREYHNKRIRYKFVITQRYPDHTGASHRLRPRHVLTDPSDPITFALDAFSSNTRSGLDDCTTRDEVTAAVAAQGKCALENVTVGEPRRGYTGASSVWVRCPVEAAASLAAPPPGRPSGNPGMLRVGWIAAHVHLLEPRAWRCLRCFSTGHGLARCTSSVDRSGLCFRCGQPGHKAASCTAAPHCALCAAAGRRASHRTGGKACFSSGNNTERNRRRKSKRRQNRRLARGALANAVIPAAVPVPEGGGSGEGEGAMDDMLSQSMAEWSIDVAVVAEPYFVPPANDCWFGDDGGLAAIVIRRDAAIPPLAMVTRGQGFVAVQLEGTVVIGAYFSPNRPTVEFGHFLGGIGAIARRLAPRPVILAGDLNAKSVAWGSPRSDARGRLLERWANVAGLCLLNRGSVATCVRWQGESIVDVTFASPAIARRIRDWRVLEGAETLSDHRYIRFDLSARSAVADVHRDHPHGASRSFPKWALKRLNKELLMEASMVAAWAPMRPHPVEVEGEAGWFRDTMCRICDASMPRIGPRLPNRQAYWWSPEIAQLRVECVRARRECARHRRRRLPRRNDPVAFAAEEVRLHGAFRVAQRALQLAIRRAKNQHMEGLLETLDEDPWGRPYHMVRNKMRPWAPPITERLQPQQLRDIVSALFPQERDGFIAPAMDTPPEYDGEVPAEVPHITGAELRVAVRKMCAKDTAPGPDGVHGRVWGLALGALGDRLLRLYNSCLESGRFPSSWRTGRLVLLRKEGRPADTAAGYRPIVLLDEVGKLLERILAARIIQHLAGVGPDLSAEQYGFREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGRWKDTECPPTFAGWPRRVPPIDAQIVVGGVRIGVGVQLKYLGLILDSRWTFRAHFQNLVPRLLGVAGALSRLLPNVGGPDQVTRRLYTGVVRSMALYGAPVWGQSLAVGVAKLLQRPQRTIAVRVIRGYRTISFEAACVLAGTPPWVLEAEALAADYQWRADFRARGVARPSPSVVRARRAQSRRSVLESWSRRLADPSAGRRTVEAIRPVLVDWANRDRGRLTFRLTQVLTGHGCFGEFLHRIRAEPTAECHHCGCDLDTAEHTLVACPAWEGWRRVLVAKIGNDLSLPSVVASMLGDDESWKAMLDFCECTISQKEAAGRVRDAQARRRRAGAREADIAQALAL

Uniprot

NA

ProteinModelPortal

NA

PDB

1WDU E-value=5.39705e-11, Score=167

KEGG

105841773 no KO assigned | (RefSeq) serine/arginine repetitive matrix protein 1-like

GO

GO:0003676 GO:0008270 GO:0016787 GO:0030163 GO:0015935 GO:0051603 GO:0051028 GO:0005622 GO:0006810 GO:0003824

Length:

1194

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.677399999999997

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02740

outside

1 - 1194

Pi

132.672335

Theta

24.67782

Tajima's D

0.67003

CLR

0.213053

CSRT

0.574121293935303

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree