Gene

KWMTBOMO10963

Annotation

PREDICTED:_uncharacterized_protein_K02A2.6-like_[Bombyx_mori]

Location

Bomo_Chr18(-):8276661-8278356      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.416

CDS

ATGGGTGCACGCCGCAACCTTCCTAAACTAGCCAATAACCGATTGGTAAGATGGGCCCTAGTAGTGGGAAGTTATCAATATGACATTTACTACAGGAAAGGTGAAAATAACACATTAGCTGATTGCCTTTCCAGATTACCAAACCCTGAAACTGAACCCTCCGAGACAGAAGGGCTTGTACATAAAATAGATCTACGTCTTTTGAGCACTCGAATGACTGACCTTAACCTATCAGAACAGTTACTTATGAAAACAACTGCAAAGGATCATATACTCACAAAAGTTTGTCAAAATTTAAAAACCGGCTGGAGAGAATCAGTATACAATCCAGAAATGAAACCATTCTACAGAAACCGGACTGAATTATCTGTTGAGAATAAGATACTTATGAGGCAAGGACGCATCGTTATACCTACAGCACTCCGAAAAGCCATTCTTACATACCTTCATCGAGGACACCCTGGCATTTCTGCTATGAAAGCACTTTCACGTTACTATGTTTGGTGGCCTAACCTTGACGAAGACATAGAATTATTTGTCAAGAAATGTACCAGATGCCAACAGAACCGCCCTTGTAATCCTGAACTTCCTGTATTTTCCTGGTCCATACCAGAAGAAGTATGGGAGAGAATCCATATCGACTTTGCTGGACCGTTCGAAGGATCGTATTGGTTGGTATTGTGCGACGCTCTCTCCAAATGGGTGGAAATACGACCGATGAAACACATCAACACCAGATCACTTTGTCTTACATTAGATAACATATTTTGTACATTTGGCTTACCAAAAATGATTATATCCGATAATGGACCTCAATTTACATCTTATGAATTTAAAGAATATTGCACAAAACAGTCTATTTTACATGTCACATCATCTCCATATCATCCTCGGACAAATGGGCTGGCAGAACGTTTAGTCAGAACATTCAAAAATAGAATGGCATCGGTAGACAATACAAATCTCGAGCGCCGACTATTAGAATTTCTGTTTACATACAGAAACACTCCGCACTCGTCCACTGGTAAATCTCCAGCTGAGATGATGTTTGGAAGACAATTGAATTGCATACTTTCCAACATTCGGCCAGACAAAAGAAGGTTAATGCAGTATTTACAAGTAAAAGAAAATATTCGTACCACATCACCGAGTTACCGACCAAGTGACCAAGTATATATTAAAACACGCAATGATAAAATATGGGAACCAGCGGTAATTACATCCCGAAAACATAAATATTCATATATTGTTTCAACACCAGGAGGACTAGAAAAACGAAGACACGCTGATCACATCAGGCCACGCGAGTCTTCCACCTCAGAAACCCCGAGGAATGAAAGGGCGCATTCTTCTATGCTGCCGACGACTGCTTCTCCAGACATTGGAATGGAAACATCAATTAGCGAAAGGCTAACTAACAATAAGAATTCATTACCTACACTGCAGTCGCCTACAAATGTACAAATTTCTCCAAATTCACCTTCACAGCATTCGAAGTTATACTCCTCACCTGCTCCGGTCTCCACTCCTGTGCCATTTGCTCCGCGTCGAAGTAATCGACGTATACAGGCACCCCGCCGTCTGATCAACGAGATGTAG

Protein

MGARRNLPKLANNRLVRWALVVGSYQYDIYYRKGENNTLADCLSRLPNPETEPSETEGLVHKIDLRLLSTRMTDLNLSEQLLMKTTAKDHILTKVCQNLKTGWRESVYNPEMKPFYRNRTELSVENKILMRQGRIVIPTALRKAILTYLHRGHPGISAMKALSRYYVWWPNLDEDIELFVKKCTRCQQNRPCNPELPVFSWSIPEEVWERIHIDFAGPFEGSYWLVLCDALSKWVEIRPMKHINTRSLCLTLDNIFCTFGLPKMIISDNGPQFTSYEFKEYCTKQSILHVTSSPYHPRTNGLAERLVRTFKNRMASVDNTNLERRLLEFLFTYRNTPHSSTGKSPAEMMFGRQLNCILSNIRPDKRRLMQYLQVKENIRTTSPSYRPSDQVYIKTRNDKIWEPAVITSRKHKYSYIVSTPGGLEKRRHADHIRPRESSTSETPRNERAHSSMLPTTASPDIGMETSISERLTNNKNSLPTLQSPTNVQISPNSPSQHSKLYSSPAPVSTPVPFAPRRSNRRIQAPRRLINEM

Uniprot

A0A146L9N5   A0A0A9W826   A0A0A9W3I3   A0A085MBQ8   A0A085MRU5   A0A085MTP2   + More
A0A224XI32   A0A085M406   A0A0C2JXZ5   A0A0A9W822   A0A0C2JFK2   A0A0A9XIJ3   A0A0V0RWN6   A2TGR5   A0A0V1M094   A0A1X7UMM3   A0A3B3B4L9   A0A3P8VSE7   A0A3P8Q506   A0A3P8REG6   A0A3P8NV61   A2TGR4   I3KY30   A0A147BIP4   A0A1S3L075   A0A1X7TWV5   A0A0V0RTT5   A0A0V1M0R9   A0A0V0T1Y1   A0A1X7VU64   A0A085NTT0   A0A3B5BG14   A0A3P8NQC4   A0A3P8NEQ7   A0A3P8NSN2   A0A0V0WST9   A0A0C2IU42   A0A1X7T719   A0A0V0T7V6   A0A1X7TIE8   A0A131Y536   A0A0V0VH72   A0A131XQT5   A0A0V1KNI7   A0A183BQV4   A0A0V0USW3   A0A1A8NDL9   A0A0V1BVI1   A0A1S3SSU6   A0A1S3KHX3   A0A1X7U623   A0A2G8LDX6   A0A1S3HLN2   A0A3B3HJL6   A0A0C2J194   A0A090XCC9   A0A0V1MIE6   A0A267EVG4   A0A0V0US17   A0A1E1XN56   A0A1A7WUZ7   A0A1A7YSF0   A0A0V1A810   W4LMH6   A0A2G8KMB1   A0A085MQC7   A0A0V1GSV8   A0A1B6LWG3   A0A0V1D4I1   A0A2G8LB01   A0A0V0VH28   A0A085LNJ3   A0A1E1XFQ3   T2MJH3   A0A2I4C6V0   A0A0V1BEY8   A0A0V1BER5   A0A0V0SN26   A0A0V1DDI4   A0A147BJB1   A0A0V1C3T1   A0A3Q1GLI5   A0A0V1CKC4   A0A0V1BEI5   A0A1X7TH22   A0A267H2K6   Q5D8K5   A0A147BJS0   A0A3P8NG09   A0A085N023   A0A0V1APA6   A0A2G8L7G7   A0A147BJE4  

Pubmed

26823975    25401762    24929829    25381665    17694394    29451363    + More
24487278    25186727    29652888    29023486    17554307    25970599    29209593    24476823    28503490    24065732    16617374   

EMBL

GDHC01014693    GDHC01004534    JAQ03936.1    JAQ14095.1    GBHO01042589    JAG01015.1    + More
GBHO01042596    JAG01008.1    KL363205    KFD54654.1    KL367712    KFD59941.1    KL367659    KFD60588.1    GFTR01008725    JAW07701.1    KL363234    KFD51952.1    JWZT01000439    KII74358.1    GBHO01042594    GBHO01042593    JAG01010.1    JAG01011.1    JWZT01002984    KII68048.1    GBHO01045651    GBHO01045644    GBHO01026684    GBHO01026679    JAF97952.1    JAF97959.1    JAG16920.1    JAG16925.1    JYDL01000067    KRX18868.1    EF199622    ABM90393.1    JYDO01000448    KRZ65220.1    EF199621    ABM90392.1    AERX01052799    AERX01052800    GEGO01004800    JAR90604.1    JYDL01000080    KRX17894.1    JYDO01000377    KRZ65389.1    JYDJ01000966    KRX32990.1    KL363182    KL367475    KFD58860.1    KFD72876.1    JYDK01000060    KRX78865.1    JWZT01005674    KII60352.1    JYDJ01000471    KRX35129.1    GEFM01002211    JAP73585.1    JYDN01000036    KRX62859.1    GEFM01006397    JAP69399.1    JYDW01000348    KRZ48953.1    JYDN01000181    KRX54093.1    HAEH01001481    SBR66981.1    JYDH01000010    KRY40903.1    MRZV01000113    PIK58451.1    JWZT01001719    KII71554.1    GBIH01000761    JAC93949.1    JYDO01000093    KRZ71620.1    NIVC01001652    PAA65446.1    KRX54086.1    GFAA01002662    JAU00773.1    HADW01008367    SBP09767.1    HADX01010638    SBP32870.1    JYDQ01000025    KRY20467.1    AZHX01001899    ETW98900.1    MRZV01000478    PIK49152.1    KL367976    KFD59423.1    JYDP01000327    KRZ01162.1    GEBQ01020673    GEBQ01011946    JAT19304.1    JAT28031.1    JYDI01000050    KRY55859.1    MRZV01000143    PIK57404.1    KRX62850.1    KL363365    KFD46539.1    GFAC01001150    JAT98038.1    HAAD01006009    CDG72241.1    JYDH01000054    KRY35448.1    KRY35447.1    JYDL01000001    KRX27995.1    JYDI01000010    KRY59721.1    GEGO01004546    JAR90858.1    JYDI01000800    KRY43965.1    JYDI01000169    KRY49681.1    KRY35446.1    NIVC01000050    PAA92506.1    AY816119    AAW27851.1    GEGO01004367    JAR91037.1    KL367587    KFD62819.1    JYDH01000411    KRY26494.1    MRZV01000184    PIK56202.1    GEGO01004533    JAR90871.1   

Proteomes

UP000054630    UP000054843    UP000007879    UP000261560    UP000265120    UP000265100    + More
UP000005207    UP000087266    UP000055048    UP000261400    UP000054673    UP000054681    UP000054721    UP000050741    UP000054776    UP000230750    UP000085678    UP000001038    UP000215902    UP000054783    UP000019140    UP000055024    UP000054653    UP000192220    UP000257200   

Pfam

PF00665   rve        + More
PF00078   RVT_1
PF17919   RT_RNaseH_2
PF17921   Integrase_H2C2
PF17917   RT_RNaseH
PF00098   zf-CCHC
PF04500   FLYWCH
PF00077   RVP

Interpro

IPR000477   RT_dom        + More
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       
IPR012337   RNaseH-like_sf       
IPR001995   Peptidase_A2_cat       
IPR001969   Aspartic_peptidase_AS       
IPR021109   Peptidase_aspartic_dom_sf       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR034128   K02A2.6-like       
IPR041373   RT_RNaseH       
IPR007588   Znf_FLYWCH       
IPR018061   Retropepsins       

SUPFAM

SSF53098   SSF53098        + More
SSF50630   SSF50630       
SSF57756   SSF57756       

Gene 3D

3.30.420.10     2.40.70.10    

CDD

cd05484  retropepsin_like_LTR_2

ProteinModelPortal

A0A146L9N5   A0A0A9W826   A0A0A9W3I3   A0A085MBQ8   A0A085MRU5   A0A085MTP2   + More
A0A224XI32   A0A085M406   A0A0C2JXZ5   A0A0A9W822   A0A0C2JFK2   A0A0A9XIJ3   A0A0V0RWN6   A2TGR5   A0A0V1M094   A0A1X7UMM3   A0A3B3B4L9   A0A3P8VSE7   A0A3P8Q506   A0A3P8REG6   A0A3P8NV61   A2TGR4   I3KY30   A0A147BIP4   A0A1S3L075   A0A1X7TWV5   A0A0V0RTT5   A0A0V1M0R9   A0A0V0T1Y1   A0A1X7VU64   A0A085NTT0   A0A3B5BG14   A0A3P8NQC4   A0A3P8NEQ7   A0A3P8NSN2   A0A0V0WST9   A0A0C2IU42   A0A1X7T719   A0A0V0T7V6   A0A1X7TIE8   A0A131Y536   A0A0V0VH72   A0A131XQT5   A0A0V1KNI7   A0A183BQV4   A0A0V0USW3   A0A1A8NDL9   A0A0V1BVI1   A0A1S3SSU6   A0A1S3KHX3   A0A1X7U623   A0A2G8LDX6   A0A1S3HLN2   A0A3B3HJL6   A0A0C2J194   A0A090XCC9   A0A0V1MIE6   A0A267EVG4   A0A0V0US17   A0A1E1XN56   A0A1A7WUZ7   A0A1A7YSF0   A0A0V1A810   W4LMH6   A0A2G8KMB1   A0A085MQC7   A0A0V1GSV8   A0A1B6LWG3   A0A0V1D4I1   A0A2G8LB01   A0A0V0VH28   A0A085LNJ3   A0A1E1XFQ3   T2MJH3   A0A2I4C6V0   A0A0V1BEY8   A0A0V1BER5   A0A0V0SN26   A0A0V1DDI4   A0A147BJB1   A0A0V1C3T1   A0A3Q1GLI5   A0A0V1CKC4   A0A0V1BEI5   A0A1X7TH22   A0A267H2K6   Q5D8K5   A0A147BJS0   A0A3P8NG09   A0A085N023   A0A0V1APA6   A0A2G8L7G7   A0A147BJE4  

PDB

3S3N     E-value=4.20849e-17,     Score=217

KEGG

105842438    no KO assigned | (RefSeq) uncharacterized protein K02A2.6-like

GO

GO:0015074   GO:0003676   GO:0004190   GO:0008270   GO:0016021   GO:0016874   GO:0005840   GO:0006412   GO:0015935   GO:0051603   GO:0051028   GO:0005622   GO:0006810   GO:0003824  

Length:

532

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0381800000000001

Exp number, first 60 AAs:

0.03108

Total prob of N-in:

0.00393

outside

1  -  532

 

 

Pi

246.375712

Theta

181.41516

Tajima's D

0.66419

CLR

41.934557

CSRT

0.559322033898305

Interpretation

Uncertain