Gene

KWMTBOMO10960  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008335

Annotation

PREDICTED:_28S_ribosomal_protein_S2?_mitochondrial-like_[Amyelois_transitella]

Location

Bomo_Chr18(-):8258409-8260286      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.031

CDS

ATGATTTTGAGTAATACAGGGTGTAGATATACAAAATATGGATTTTCACTTCTGAGATACACATCAACTTCTCCACAAGTCATTCCAGAGAATGTAATTGATGTGCAACAAAATCAGAAAAATCCTCTTGATTACCCAGATTATTTTGGTGTACATAATTTATTTACAGTAAAAGACCTATTTGATGCAAGAGTGCATTATGGTCATAAAATAGGGTCCCTTAATGATAACATGAGATCATACATATATGGTTCAAGACTTGGACACCTCATTTTTGATTTGGATACAACAGCTGAACATTTACGTAAAGCTCTTAATTTCACAGCCCACATTGCATACAGAGGTGGAATCATTTGTTTTTTTAATAGGAATTCACTAAATGCACATATCGTGGAAAAAACAGCAATGGAATGTGGAGAATATGCTCATACAAGATTCTGGAGAGGTGGTATCTTCACAAATGCCAATCAGCAGTTTGGTGCTATAACAAGATTACCTGACTTATGTATATTTCTTAACACCCAGAATAATATTTTGAATCAGCACACAGCTGTCAGAGATAGTGCAAAAATGTTAATACCAACAATTGGAATTGTCGACTCAAATTGTAATCCTAATTTGGTATCATACCCTGTACCTGGCAATGATGATTCCCCAACAGCCATAGAGCTCTACTGTAAGTTATTTAAAAGTGCTATTATTAGAGGAAAGGAAGAAAGACGTAAGTTTCTACAGGAGACAGAGTAA

Protein

MILSNTGCRYTKYGFSLLRYTSTSPQVIPENVIDVQQNQKNPLDYPDYFGVHNLFTVKDLFDARVHYGHKIGSLNDNMRSYIYGSRLGHLIFDLDTTAEHLRKALNFTAHIAYRGGIICFFNRNSLNAHIVEKTAMECGEYAHTRFWRGGIFTNANQQFGAITRLPDLCIFLNTQNNILNQHTAVRDSAKMLIPTIGIVDSNCNPNLVSYPVPGNDDSPTAIELYCKLFKSAIIRGKEERRKFLQETE

Uniprot

A0A2A4JYU3   A0A2H1W163   A0A0L7LU65   A0A194PGV4   A0A212ERY9   A0A194RV51   + More
A0A1I8QC64   A0A0L0CDN1   A0A1I8MP94   A0A034VA12   A0A0K8VUV2   W8CBQ4   A0A1B0AGW2   D3TPQ3   A0A1A9YG85   A0A1W4UIX2   A0A3B0K6M5   A0A0M3QT82   A0A1A9VXS9   A0A1A9WMC1   A0A1B0APU0   B3MVJ1   B4NZ19   B4Q337   Q8MSS7   Q29M94   B4G9K0   B4KGQ2   B4N0J9   B4I173   B3N4A7   B4JQB0   B4MDQ0   A0A139WLL3   A0A023EKT4   Q16YD1   A0A0K8TRS0   I4DL61   A0A1S4FJW4   A0A2M4AXZ4   A0A1B0EYW2   A0A182VHR2   A0A182GG99   A0A2C9GQE5   B0X2T8   A0A1S4H7U9   A0A087YU66   W5JUD0   A0A182S839   A0A182TVA5   A0A182J9J0   A0A1Q3F9V5   Q7PZF7   U5ER31   A0A1Y1MNU6   A0A1L8DRC8   K7INN1   A0A182Y9F2   A0A182MTG3   A0A182WDX9   A0A2J7R1Q3   A0A1W4WY49   A0A182JRB1   A0A182XJV1   A0A182L522   A0A232EIX3   A0A182RRZ7   A0A182PKE3   A0A336K5H6   A0A182Q9R8   N6TE21   A0A182N2W7   A0A2P8YET5   A0A3R7M5S7   A0A1B0C9L5   A0A067QZ31   A0A0C9RBN8   A0A1B0FLU6   E9J4W6   A0A158NWW8   F4WVM9   A0A0L7QUF9   A0A195BRU2   A0A1B6L498   A0A2A3ELL6   A0A0P4WVB6   A0A1B6DFW9   A0A151ISA6   R4WE33   A0A195CWX4   A0A088A204   A0A151XK77   A0A026X414   A0A151JYA4   A0A1B6GLH6   A0A182FB46   A0A1B6IXB3   E2BJN7   A0A3R7PWC5  

Pubmed

26227816    26354079    22118469    26108605    25315136    25348373    + More
24495485    20353571    17994087    17550304    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085    18362917    19820115    24945155    17510324    26369729    22651552    26483478    12364791    20920257    28004739    20075255    25244985    20966253    28648823    23537049    29403074    24845553    21282665    21347285    21719571    23691247    24508170    30249741    20798317   

EMBL

NWSH01000347    PCG77185.1    ODYU01005418    SOQ46234.1    JTDY01000072    KOB79023.1    + More
KQ459604    KPI92532.1    AGBW02012905    OWR44229.1    KQ459765    KPJ20046.1    JRES01000536    KNC30356.1    GAKP01020568    GAKP01020565    GAKP01020562    GAKP01020559    GAKP01020556    GAKP01020553    GAKP01020550    GAKP01020547    JAC38393.1    GDHF01009999    JAI42315.1    GAMC01000279    JAC06277.1    EZ423405    ADD19681.1    OUUW01000004    SPP79138.1    CP012523    ALC38429.1    JXJN01001573    JXJN01001574    CH902624    EDV33256.1    CM000157    EDW87683.1    CM000361    CM002910    EDX03753.1    KMY88139.1    AE014134    AY118630    AAF50970.2    AAM49999.1    CH379060    EAL33800.1    CH479180    EDW29030.1    CH933807    EDW13252.1    CH963920    EDW77612.1    CH480820    EDW54280.1    CH954177    EDV57777.1    CH916372    EDV99090.1    CH940661    EDW71311.1    KQ971321    KYB28774.1    GAPW01003818    JAC09780.1    CH477518    EAT39639.1    GDAI01000539    JAI17064.1    AK402029    BAM18651.1    GGFK01012342    MBW45663.1    AJVK01035434    JXUM01061327    JXUM01137733    KQ568620    KQ562145    KXJ68945.1    KXJ76578.1    APCN01002416    DS232298    EDS39412.1    AAAB01008986    ADMH02000120    ETN67751.1    GFDL01010723    JAV24322.1    EAA00165.4    GANO01003954    JAB55917.1    GEZM01031552    JAV84897.1    GFDF01005062    JAV09022.1    AXCM01009764    NEVH01008202    PNF34766.1    NNAY01004149    OXU18295.1    UFQS01000035    UFQT01000035    SSW97953.1    SSX18339.1    AXCN02001090    APGK01033087    KB740860    KB631777    ENN78599.1    ERL86026.1    PYGN01000655    PSN42751.1    QCYY01002111    ROT72797.1    AJWK01002461    AJWK01002462    AJWK01002463    KK852818    KDR15668.1    GBYB01004291    JAG74058.1    CCAG010004762    GL768121    EFZ12121.1    ADTU01028694    GL888391    EGI61747.1    KQ414735    KOC62278.1    KQ976421    KYM89082.1    GEBQ01021497    JAT18480.1    KZ288215    PBC32607.1    GDRN01056185    JAI65860.1    GEDC01012710    JAS24588.1    KQ981090    KYN09566.1    AK418054    BAN21269.1    KQ977171    KYN05145.1    KQ982045    KYQ60737.1    KK107019    QOIP01000007    EZA62751.1    RLU20527.1    KQ981486    KYN41433.1    GECZ01006606    JAS63163.1    GECU01016184    JAS91522.1    GL448604    EFN84095.1    QCYY01001287    ROT79139.1   

Proteomes

UP000218220    UP000037510    UP000053268    UP000007151    UP000053240    UP000095300    + More
UP000037069    UP000095301    UP000092445    UP000092443    UP000192221    UP000268350    UP000092553    UP000078200    UP000091820    UP000092460    UP000007801    UP000002282    UP000000304    UP000000803    UP000001819    UP000008744    UP000009192    UP000007798    UP000001292    UP000008711    UP000001070    UP000008792    UP000007266    UP000008820    UP000092462    UP000075903    UP000069940    UP000249989    UP000075840    UP000002320    UP000000673    UP000075901    UP000075902    UP000075880    UP000007062    UP000002358    UP000076408    UP000075883    UP000075920    UP000235965    UP000192223    UP000075881    UP000076407    UP000075882    UP000215335    UP000075900    UP000075885    UP000075886    UP000019118    UP000030742    UP000075884    UP000245037    UP000283509    UP000092461    UP000027135    UP000092444    UP000005205    UP000007755    UP000053825    UP000078540    UP000242457    UP000078492    UP000078542    UP000005203    UP000075809    UP000053097    UP000279307    UP000078541    UP000069272    UP000008237   

PRIDE

Q8MSS7   

Pfam

PF00318   Ribosomal_S2        + More
PF00400   WD40
PF00628   PHD
PF13639   zf-RING_2
PF00013   KH_1
PF00076   RRM_1

Interpro

IPR005706   Ribosomal_S2_bac/mit/plastid        + More
IPR001865   Ribosomal_S2       
IPR023591   Ribosomal_S2_flav_dom_sf       
IPR018130   Ribosomal_S2_CS       
IPR017986   WD40_repeat_dom       
IPR036322   WD40_repeat_dom_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR037626   NUP37       
IPR001680   WD40_repeat       
IPR010989   SNARE       
IPR000727   T_SNARE_dom       
IPR001841   Znf_RING       
IPR019786   Zinc_finger_PHD-type_CS       
IPR019787   Znf_PHD-finger       
IPR013083   Znf_RING/FYVE/PHD       
IPR001965   Znf_PHD       
IPR017907   Znf_RING_CS       
IPR011011   Znf_FYVE_PHD       
IPR040160   Mxt       
IPR004088   KH_dom_type_1       
IPR016021   MIF4-like_sf       
IPR004087   KH_dom       
IPR036612   KH_dom_type_1_sf       
IPR035979   RBD_domain_sf       
IPR000504   RRM_dom       
IPR012677   Nucleotide-bd_a/b_plait_sf       

SUPFAM

SSF52313   SSF52313        + More
SSF50978   SSF50978       
SSF47661   SSF47661       
SSF57903   SSF57903       
SSF54791   SSF54791       
SSF54928   SSF54928       

Gene 3D

2.130.10.10     3.30.40.10     1.25.40.180     3.30.1370.10     3.30.70.330    

CDD

cd01425  RPS2

ProteinModelPortal

A0A2A4JYU3   A0A2H1W163   A0A0L7LU65   A0A194PGV4   A0A212ERY9   A0A194RV51   + More
A0A1I8QC64   A0A0L0CDN1   A0A1I8MP94   A0A034VA12   A0A0K8VUV2   W8CBQ4   A0A1B0AGW2   D3TPQ3   A0A1A9YG85   A0A1W4UIX2   A0A3B0K6M5   A0A0M3QT82   A0A1A9VXS9   A0A1A9WMC1   A0A1B0APU0   B3MVJ1   B4NZ19   B4Q337   Q8MSS7   Q29M94   B4G9K0   B4KGQ2   B4N0J9   B4I173   B3N4A7   B4JQB0   B4MDQ0   A0A139WLL3   A0A023EKT4   Q16YD1   A0A0K8TRS0   I4DL61   A0A1S4FJW4   A0A2M4AXZ4   A0A1B0EYW2   A0A182VHR2   A0A182GG99   A0A2C9GQE5   B0X2T8   A0A1S4H7U9   A0A087YU66   W5JUD0   A0A182S839   A0A182TVA5   A0A182J9J0   A0A1Q3F9V5   Q7PZF7   U5ER31   A0A1Y1MNU6   A0A1L8DRC8   K7INN1   A0A182Y9F2   A0A182MTG3   A0A182WDX9   A0A2J7R1Q3   A0A1W4WY49   A0A182JRB1   A0A182XJV1   A0A182L522   A0A232EIX3   A0A182RRZ7   A0A182PKE3   A0A336K5H6   A0A182Q9R8   N6TE21   A0A182N2W7   A0A2P8YET5   A0A3R7M5S7   A0A1B0C9L5   A0A067QZ31   A0A0C9RBN8   A0A1B0FLU6   E9J4W6   A0A158NWW8   F4WVM9   A0A0L7QUF9   A0A195BRU2   A0A1B6L498   A0A2A3ELL6   A0A0P4WVB6   A0A1B6DFW9   A0A151ISA6   R4WE33   A0A195CWX4   A0A088A204   A0A151XK77   A0A026X414   A0A151JYA4   A0A1B6GLH6   A0A182FB46   A0A1B6IXB3   E2BJN7   A0A3R7PWC5  

PDB

6NF8     E-value=1.45082e-71,     Score=683

KEGG

101739031    K02967 small subunit ribosomal protein S2 | (RefSeq) 28S ribosomal protein S2, mitochondrial

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0003735   GO:0006412   GO:0015935   GO:0032543   GO:0005763   GO:0031080   GO:0016192   GO:0016021   GO:0005840   GO:0046872   GO:0045727   GO:0008190   GO:0003723   GO:0005622   GO:0051603   GO:0051028   GO:0006810   GO:0003824  

PANTHER

PTHR12534   PTHR22806   PTHR20849  

Length:

248

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02263

Exp number, first 60 AAs:

0.00053

Total prob of N-in:

0.08949

outside

1  -  248

 

 

Pi

175.673678

Theta

165.950084

Tajima's D

0.142975

CLR

0.037339

CSRT

0.404129793510324

Interpretation

Uncertain