Gene

KWMTBOMO10959

Pre Gene Modal

BGIBMGA008504

Annotation

PREDICTED:_leucine-rich_repeat-containing_protein_58-like_[Amyelois_transitella]

Location

Bomo_Chr18(+):8253167-8258167      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.344 Nuclear   Reliability : 1.749

CDS

ATGATAGATACATTAAGTATCTCTGCTGAAATGAGAAGTATAGTGGATGAAAAAGATTGTGCTGAAAGCTACGAGATAATATTACTGTACAACAACAGAATACAATCACTTCCAAATTTCCTAAACAGGTTTTGCAACTTGAAAATTTTGAATGTGAGCAACAACAGGCTGACTGTTTTACCAGATGTGTTTAAGAATTGTCCCCTCACGACTTTGGTAGCAAAACATAATCAACTCACTAACGAGTCACTTCCCAAATCATTTTATACTGCAAAGAATACTCTTCGTGAACTGAACCTCAGTGGAAATCAGTTAAATTTATTCCCAGAGCAGATATTCGAATTGACACATCTGAAATATCTTTACCTAGGCAGTAATAAAATAGTTAACATACCAAAGGACATTTGGAAATTAAGCGGTTTGCAAATACTATCACTTGGTGGTAACCAAATTATCGAAGTGCCCGAGAACGTAGGTCACTTAACTTCACTACAAGCGTTGGTGCTCAGTGATAATTTGATCGAACAATTGCCAGCAAGCATCACAAAACTGAAGAATTTAAGATCTTTATTATTGCACAAGAATCGATTGAAAACTTTGCCTACACAAATTATTAAACTAAAATGCTTGACAGAGCTCAGTCTTCGGGACAATCCCCTTGTAGTAAGATTCGTTAGAGACATGACTCTGCAGCCACCATCACTCTTAGAGCTGGCTGGTCGCACTGTGAAACTTCACAACATTCCAATTGAAACTGGAGGTATTCCTAAGACATTGATCAATTATCTGCAAGCAGCCCAATGTTGTGTCAATCCAAAATGCAAAGGTGTCTTCTTTGACAACCGCGTAGAACACATCAAATTTGTAGATTTTTGTGGAAAGTACAGGATTCCATTACTACAATATTTATGCAGTTCAAAATGTATTACTGGAAGTTGGGAAAGCCGTGAGGTAGACAGTAATCCTCACCCACATATGATGCGAAAGGTTCTTCTGGGTTAA

Protein

MIDTLSISAEMRSIVDEKDCAESYEIILLYNNRIQSLPNFLNRFCNLKILNVSNNRLTVLPDVFKNCPLTTLVAKHNQLTNESLPKSFYTAKNTLRELNLSGNQLNLFPEQIFELTHLKYLYLGSNKIVNIPKDIWKLSGLQILSLGGNQIIEVPENVGHLTSLQALVLSDNLIEQLPASITKLKNLRSLLLHKNRLKTLPTQIIKLKCLTELSLRDNPLVVRFVRDMTLQPPSLLELAGRTVKLHNIPIETGGIPKTLINYLQAAQCCVNPKCKGVFFDNRVEHIKFVDFCGKYRIPLLQYLCSSKCITGSWESREVDSNPHPHMMRKVLLG

Uniprot

H9JG57   A0A2A4JZI7   A0A2H1VZL3   A0A194PHK7   A0A3S2TB08   A0A194RRE8   + More
A0A212ERV7   A0A182J465   A0A182V8P5   F5HLP7   A0A182XFB1   A0A182MQU9   A0A182Y8V9   A0A182RT39   A0A182TBA7   A0A182PTB0   A0A0L0BYP7   A0A2J7R569   A0A182JTY3   A0A182KZM5   A0A182HYK4   A0A1I8PYS4   A0A182UIC7   A0A0K8W0P6   A0A034WHR9   A0A0C9RTW8   A0A0A1WYI1   A0A182W3C8   A0A2M4BSA4   A0A1L8EID8   A0A182F9H7   A0A1L8EHZ7   A0A2M4ACH6   A0A023EQH5   T1DH18   A0A2M4BSN3   A0A2M3YYG7   W5JJ38   A0A1Q3FD35   A0A1Q3FBH1   D3TPL0   T1PDI2   B4NPA7   B3NW23   B0WH12   B4PXX5   A0A2M4A1L0   A0A2M4A1E6   A0A182G6T3   A0A0L7QNV0   A0A088AP30   A0A2A3ERZ4   B3MY09   W8AYH5   A0A2M4AJ77   A0A0N0BDK6   A0A023EQD6   B4L3E1   A0A1A9W3Z5   Q17AP2   B4R7K5   A0A182Q528   A0A3B0KV71   A0A195EJN5   Q9W2U2   Q29H41   A0A195CA71   A0A139WJ18   A0A0M5J1I7   B4H0D1   B4MES5   A0A1L8E9I2   A0A154PNX7   E2C156   A0A1B6DR41   E2A7W2   A0A1W4V7A6   A0A195BGP4   J3JTC7   A0A1B0GFQ0   A0A1B0AC22   A0A151WXN1   B4JKQ0   A0A1A9ULD6   A0A1J1IW72   A0A195F1L7   A0A3L8DS70   F4X3W0   A0A026X1H7   A0A067RNP1   A0A1S3CWN8   T1I634   A0A0P4VR27   E9I8X1   A0A336KQ08   A0A224XRD2   E0VLD6   A0A1J1IU91   A0A069DYR8   A0A1Y1KD58  

Pubmed

19121390    26354079    22118469    12364791    14747013    17210077    + More
25244985    26108605    20966253    25348373    25830018    24945155    20920257    23761445    20353571    25315136    17994087    17550304    26483478    24495485    17510324    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085    18362917    19820115    20798317    22516182    23537049    30249741    21719571    24508170    24845553    27129103    21282665    20566863    26334808    28004739   

EMBL

BABH01002039    NWSH01000347    PCG77186.1    ODYU01005418    SOQ46233.1    KQ459604    + More
KPI92533.1    RSAL01001779    RVE40697.1    KQ459765    KPJ20047.1    AGBW02012905    OWR44228.1    AAAB01008898    EAA44590.4    EGK97180.1    EGK97181.1    AXCM01000209    JRES01001143    KNC25167.1    NEVH01007393    PNF35984.1    APCN01005389    GDHF01007643    JAI44671.1    GAKP01005065    GAKP01005064    JAC53887.1    GBYB01011026    JAG80793.1    GBXI01010829    JAD03463.1    GGFJ01006789    MBW55930.1    GFDG01000446    JAV18353.1    GFDG01000447    JAV18352.1    GGFK01005148    MBW38469.1    GAPW01002245    JAC11353.1    GAMD01002546    JAA99044.1    GGFJ01006790    MBW55931.1    GGFM01000571    MBW21322.1    ADMH02001021    ETN64387.1    GFDL01009612    JAV25433.1    GFDL01010183    JAV24862.1    EZ423362    ADD19638.1    KA646190    AFP60819.1    CH964291    EDW86347.1    CH954180    EDV46156.1    DS231931    EDS27337.1    CM000162    EDX02947.1    GGFK01001314    MBW34635.1    GGFK01001315    MBW34636.1    JXUM01007509    JXUM01007510    KQ560241    KXJ83636.1    KQ414849    KOC60244.1    KZ288193    PBC33986.1    CH902630    EDV38624.1    GAMC01015363    GAMC01015362    GAMC01015361    JAB91192.1    GGFK01007513    MBW40834.1    KQ435859    KOX70562.1    GAPW01002819    JAC10779.1    CH933810    EDW07069.1    CH477331    EAT43344.1    CM000366    EDX17564.1    AXCN02000234    OUUW01000019    SPP89251.1    KQ978782    KYN28465.1    AE014298    AY113577    AAF46596.2    AAM29582.1    CH379064    EAL31918.1    KQ978081    KYM97091.1    KQ971338    KYB27980.1    CP012528    ALC49956.1    CH479200    EDW29726.1    CH940664    EDW63050.1    GFDG01003412    JAV15387.1    KQ435007    KZC13563.1    GL451853    EFN78377.1    GEDC01009140    JAS28158.1    GL437432    EFN70476.1    KQ976490    KYM83391.1    APGK01010787    BT126483    KB738301    KB632179    AEE61447.1    ENN82675.1    ERL89609.1    CCAG010023033    KQ982663    KYQ52608.1    CH916370    EDW00153.1    CVRI01000059    CRL03828.1    KQ981856    KYN34470.1    QOIP01000005    RLU23166.1    GL888624    EGI58907.1    KK107063    EZA61244.1    KK852559    KDR21359.1    ACPB03020305    GDKW01001116    JAI55479.1    GL761662    EFZ22974.1    UFQS01000789    UFQT01000789    SSX06894.1    SSX27238.1    GFTR01005426    JAW11000.1    DS235271    EEB14192.1    CRL03827.1    GBGD01001915    JAC86974.1    GEZM01086441    GEZM01086439    GEZM01086436    JAV59443.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000283053    UP000053240    UP000007151    + More
UP000075880    UP000075903    UP000007062    UP000076407    UP000075883    UP000076408    UP000075900    UP000075901    UP000075885    UP000037069    UP000235965    UP000075881    UP000075882    UP000075840    UP000095300    UP000075902    UP000075920    UP000069272    UP000000673    UP000095301    UP000007798    UP000008711    UP000002320    UP000002282    UP000069940    UP000249989    UP000053825    UP000005203    UP000242457    UP000007801    UP000053105    UP000009192    UP000091820    UP000008820    UP000000304    UP000075886    UP000268350    UP000078492    UP000000803    UP000001819    UP000078542    UP000007266    UP000092553    UP000008744    UP000008792    UP000076502    UP000008237    UP000000311    UP000192221    UP000078540    UP000019118    UP000030742    UP000092444    UP000092445    UP000075809    UP000001070    UP000078200    UP000183832    UP000078541    UP000279307    UP000007755    UP000053097    UP000027135    UP000079169    UP000015103    UP000009046   

PRIDE

H9JG57    Q9W2U2   

Pfam

PF00560   LRR_1        + More
PF13855   LRR_8
PF13516   LRR_6
PF00075   RNase_H
PF12799   LRR_4

Interpro

IPR001611   Leu-rich_rpt        + More
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR032675   LRR_dom_sf       
IPR012337   RNaseH-like_sf       
IPR002156   RNaseH_domain       
IPR036397   RNaseH_sf       
IPR025875   Leu-rich_rpt_4       

SUPFAM

SSF53098   SSF53098       

Gene 3D

3.80.10.10     3.30.420.10    

ProteinModelPortal

H9JG57   A0A2A4JZI7   A0A2H1VZL3   A0A194PHK7   A0A3S2TB08   A0A194RRE8   + More
A0A212ERV7   A0A182J465   A0A182V8P5   F5HLP7   A0A182XFB1   A0A182MQU9   A0A182Y8V9   A0A182RT39   A0A182TBA7   A0A182PTB0   A0A0L0BYP7   A0A2J7R569   A0A182JTY3   A0A182KZM5   A0A182HYK4   A0A1I8PYS4   A0A182UIC7   A0A0K8W0P6   A0A034WHR9   A0A0C9RTW8   A0A0A1WYI1   A0A182W3C8   A0A2M4BSA4   A0A1L8EID8   A0A182F9H7   A0A1L8EHZ7   A0A2M4ACH6   A0A023EQH5   T1DH18   A0A2M4BSN3   A0A2M3YYG7   W5JJ38   A0A1Q3FD35   A0A1Q3FBH1   D3TPL0   T1PDI2   B4NPA7   B3NW23   B0WH12   B4PXX5   A0A2M4A1L0   A0A2M4A1E6   A0A182G6T3   A0A0L7QNV0   A0A088AP30   A0A2A3ERZ4   B3MY09   W8AYH5   A0A2M4AJ77   A0A0N0BDK6   A0A023EQD6   B4L3E1   A0A1A9W3Z5   Q17AP2   B4R7K5   A0A182Q528   A0A3B0KV71   A0A195EJN5   Q9W2U2   Q29H41   A0A195CA71   A0A139WJ18   A0A0M5J1I7   B4H0D1   B4MES5   A0A1L8E9I2   A0A154PNX7   E2C156   A0A1B6DR41   E2A7W2   A0A1W4V7A6   A0A195BGP4   J3JTC7   A0A1B0GFQ0   A0A1B0AC22   A0A151WXN1   B4JKQ0   A0A1A9ULD6   A0A1J1IW72   A0A195F1L7   A0A3L8DS70   F4X3W0   A0A026X1H7   A0A067RNP1   A0A1S3CWN8   T1I634   A0A0P4VR27   E9I8X1   A0A336KQ08   A0A224XRD2   E0VLD6   A0A1J1IU91   A0A069DYR8   A0A1Y1KD58  

PDB

4U06     E-value=3.22471e-25,     Score=285

KEGG

101739178    no KO assigned | (RefSeq) leucine-rich repeat-containing protein 58

GO

GO:0003676   GO:0004523   GO:0004721   GO:0016021   GO:0005515   GO:0004672   GO:0006468   GO:0016192   GO:0005839   GO:0051603   GO:0051028   GO:0005622   GO:0006810   GO:0003824  

Length:

333

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000620000000000001

Exp number, first 60 AAs:

0.00027

Total prob of N-in:

0.01179

outside

1  -  333

 

 

Pi

233.939702

Theta

198.388353

Tajima's D

0.100606

CLR

0.266113

CSRT

0.396530173491325

Interpretation

Uncertain