Silkworm Genome Informatics Database

Gene

KWMTBOMO10957

Annotation

PREDICTED:_vam6/Vps39-like_protein_[Amyelois_transitella]

Location

Bomo_Chr18(-):8185340-8211996 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.795

CDS

ATGGAGCGTAAATCAGTAAAATTCCAAGAATTTAATGTAAAATCGGATAATTGGGACAGTTATATTGACAGACTAAAATATTGTTTTGAGGCAAATGGAATCGAAAGTGATACTGTTAAAAAGGCTAATTTCTTTACTGTGTGTGGTGCTGAAGTGGTCGAAACTGTTCTCGCGTTAATTACACCAAGAAAATCTAGTGATGTGACTTTTGTTGAAATTGAAAACATTCTAACCAAACATTACAGTCCGAAACCAAATGAAATTTCTATGTCATACAAATTCTACAAACGAGATCAGGCACCAAACGAATTGGCTTCTGATTATATTGCTACGTTACGCAAAATTAGTTCGGGATGCAATTTTATTGAATTAGAACGTATGCTTCGAGATAGACTGGTGTGCGGCATGAGCGATCATAAGCTTCAGTATGAGTTGTTGAAGAGAGAACAACTTCGTTATGAAGATGTTGTACATGCTATGGTATCATCGGAGAGCGCCGGAAAGGATGTGCGCATGATTCAAAGCACGAGCACGGACACATTTGGTATGACACAGGGTGAGGTAGTGACGTCACATGCCGAGCCTATGGAATGTAAGAAAAAAGGGCATATTGAAAAGATATGTACATCTAAGAAAAACAACAAAAGAAAGAGCATTAACTATACAGATGATGAATTTCAAGCGCAATTAAATGGTATTTACAACGTGAACACAAATAGTCGGCGCGTACCAGCTTACGAAGTAAATGTGTTACTAGATGGTGTACCAGTGATTATGGAAGTGGACTCGGGTGCTGCCTACTCTCTTGTGAATTTACATACGTGGCGTCGAATACACTCTCACATGCCTTTGGAACCTTTGATGAATAAATTATGTACTTGGAATAATTCTGCAGTCAGAGTGGACGGTCAAGCCACAGTGCTAGTACAATATAAAGACATTAAATGTTCTCTTAAGGTTATTGTGGCTCAGGGTTCGGGTCCAAATTTGTTAGGACGTAATTGGTTTGAAGCTTTAGGAATATGTGTAAATGTAAATACTATTAAAGAAATTAATGTGACTGAGGTAATTTTGAATAAACATTATGAAGTTTTCAGAGCCGGACTCGGTACTTATCGTGGGGAACCTGTAAATATTCACCTGAAACCAGGTGCAGTGCCAAGATTTATGAAAGCGCGTCCTGTACCGTACGCTATCAAAGAAAGAGTTGAAAAAGAAATCAATCGCCTGGAAGCTGAAGGAGTACTCCGCCCTGTAACTTTTTCTGAGTGGGCTACTCCAGTTGTTCCTATCGTAAAAAAGAATGGAGACGTACGCCTTTGTGGAGATTATCGTAGTACAGTTAATCAGGCTACAGAGTCTGATACGTATCCAATGCCCACCGCAAGTGAAGTGTTTGCCACCATCTCTGGAGGTAATATTTTCTCAACGTTAGATCTTGATCGTGCTTATACTCAGGTGGTTGTCACAGACGACACAGCACGTCTCCTAACCTTAAACACATGTAAAGGTCTTTACACGGTACATCGGCTAGCTTTCGGCGTCAAGGCTTCCCCGGGTATATTCCAACGTTTAATGACAGCATTACTAGCTGGCATATCTGGTGTTGCAGTGCTAATCGATGACATCATCGTTAGTGGTAGAACAGCGCAGGAGATGACACAACGCTTAGATGCAGTCCTGGATCGCATTGAAAAAGCGGGATTACGACTCAATAAAGGCAAATGTAAGTTTGTAAGGAAACAAGTAGAATTTTTAGGTTTCATAATTGATGCTGAGGGTATACACCCTGCACCGAGTAAAGTAGAATCAATATTGAAAACTCCCAAACCTAAGAACGTACAAGAGCTTCAAGCTTTTCTTGGCCTTTATAATTTTTATGAGAGATTTATTCCTCACAAAGCCACCATACTTGAACCTTTACATAGATTGCTAGACAAAGCACATAAGTGGCAGTGGTCAGAACGGGAACAGAAAAGTTTCGAGGTAGCAAAACGTTTGTTGTCCTCAGAGTTAACCTTAGCTCATTATGATCTTGAAAAACCTTTGATACTTACCTGTGATAGTTCAGATTACGGTGTAGGTGCAGTTTTGTCACATGTCATGAGTGACCGACAGGAACGACCTGTTGCTATGGGGTCCAGGACACTTCACATGCACGAACGGCGCTATTCGCAGCTAGATAAAGAAGCGACTGCAATAATGTTTGGAATAAATAAATTTCAGAACTATCTCATGGGACGGTCATTTACTATTGTCACGGATCACAAACCTTTGTTAGGTATATTTGATCCAAGAAAGCCCATTCCTAATATGTTGTCACCACGTCTTACAAGAATAGCATTAGTACTTACTTCACATAATTATGATATTATTTATAAACCGGGAAAATGCATAGGACATGCAGATGGGTTGAGTCGTTGGCCACAACCTGTATCAGAACAACCTGAAGAACAGCTTCAGGACATATTGCTACTGGCCGAAACACCAGACGAGTTTCCAATAGATGTTGCTCAAATAGCAAATGCTACCAAACGAGACTCAGTTTTGTCTCGAGTACGGCATCATATACTTTCCGGATGGCCAGCTAAGATAAATGATGAGTCGCTACGTCCATACTGGCTTCACCGAAATGAATTTTCCTTGAATGAAGACTGCATTCTAATAGGCAATCGTGTAATAATACCACCATCGCTTCGGCAGCCAGTTTTAGATTGTTTGCATAAAACTCATAGTGGCATCGTTCAAACTAAAGCGATTGCTCGTAGCTACGTCTGGTGGCCACAAATGAATAAGGATATTGAAAAGTTGGTAAAGAACTGTAATCGCTGTTTGGAAAATCGACATATGCCCCCTAGAACAACTTATGAATGGATAACTCCTACCAAACCTTGGTCTCGTATTAATGTAGATTTTGCGGGACCATTCCAAAATAAAATATTCCTGATTATAGTTGACGCGTATTCGCGATGGCCAGAAGTATTCATTGTTAACAATATGACTTCGTCGACCGTTGTTAAACACCTTCGAACAATATTTGCGACACACGGATTGTGTGAGGTATTGGTGTCTGACAATGGAACACCTTTTGTATCTGAAGAAACAAGAAAATTTCTAGAGTCTAACAAAATTAGACATATTACAACGGCGCCACATCATCCGTCTACTAACGGACTGGCAGAAAGAATGGTTCAAACAGTCAAGGACAAGTTACGGAAGATGGACGGTATCTCTTGGGATATAAAACTTCCCAATATATTATTAGGACTTCGCACAATTCCATGTGCAACAACAAATAAAAGTCCATGTGAATTATTGATGAACAGGCGTTTGCGCACCTTGCTTGATACACTCCATCCAGACAATCTCCAAACGTGTAAGAGAAATGAACAGATTGAAAGAAATGGCAACAAAAAAATTAGACACACTGATGTGGGGCAGAAAGTGATGTACAGGAACTTTGGAAATGGATCCCGTTGGTTACCAGGAACGGTAGTTTACAGGAATGGGCCAGGAAACTATCAAGTAGAAACTGGTGATGGAACAGTGGTGAATAGACATATAGATCAATTACTTAAAAAAGAAACAGATTCTGGACAGGAAACTGCAGAAAGAGGGAAGGAATCGGAAGTGGATTGTGAGGCAGTGAATGTTGAGGAACAAGAAGATATGGAAGACATTTCTAGTAGTTTGGAGGAACAGGAAATTATAGAGATACCGAGTCCGGATAAATGGGCAGAAATGTTAGGAATTCCTCCCGAACCAGAATCAGGATATTCTGGTGAGAATAACCTATTATTAGGTACGAGGCAAGGCCATTTATTGATGTACTCTTTATCAACAAATAATGAAGAGCAAAAGTATCAGGTACATTTGTTAAGATACAGGAAGAATTTTAGCAAAAAACCTATTCAGCAAATTGAAGTTATACTGGATGAAAATCTATTATTATGTCTGACAGATTCTACACTAGCTACATACAACATTAATGGTGTTAATTTTCCATTAATAAAAACTTTTGAACAGACAAAGGGTGCTTCACTTTTTGCTTTGGATTGTAAGGTTTCATCAAGTAATGGTGCAGCGTCATCTGATGTTCGTCTTTGCGTTGCAGTAAGGAGGAAACTTCAAGTGTACTGCGGGAGTAAGGGTGAATTTAAACACATGCTAGATCTAAATATACCAGATGTACCAAAAGTAATGGCCTGGGGTCTGCAGTATCTATGTGTGGGATTTAAAGCAGAGTACACCCTATATGATGTGTCAGATGGAAAACCAAAAGAACTATTTCCCACAAGTAGTTCTAAATCATTAGAGCCAACTATTTCTAAGTACACAGAGACATCTTTCCTAGTAGGACGTGACCAAACATCGGTTCTTATAGAGGAGTCTAATAAAAATGTCGATATAAAGAAAACTATTAAATGGAAGGAGGCGCCTCTTGCTGTGGTGTGGGATCAGCCGTTTGTACTGGGTCTATTGCAAGATCAAGTTGTTGTGCAGACTGTGGAGCCAGCGTTTTATATACAATCATTGTCCGAATTGAATAAAGCAAGACTGATGTACAGATGCAAACGAGGCTTAATATTCGTGGCCTCCGTCGGGCAGGTGTGGTGTCTCAGCTTAGTCGACATAACGAAACAAAGGCAACAGCTACTGAAAGACAAACAGTTCCAAATAGCTATAGAGTTAACTACGTTGTCACAATGCTCGCCCGAGGAGAAAAAACAAAAAATACATTCCATACAAGTGCTGAATGCACTAGAAGACTTCGACAACAAATGTTACACGCAAGCGATGCAGGAATTCGCCAAACTAAACACCGATCCGGCCGATGTCATCAAATTGTTTCCTGAACTAGACGGCCGTACAGACGGCGAGAAAAGTGGAAAGCTGAAAGGGAAAGATTTAGAGAACGCTCTGAACGCACTTATACCGTATTTAGTTGAGTTGCGAAGAAAGATCGGCAAGGGCAGTCCCGAACCTAACGGGTCTCCTCCGCAAGAGGGAACCAGCCAAAGAAACGTCGCTCAGCAGATGGAGTTGATTGATACAACGCTTCTGAAATGCTATTTAATGACAAACGACGCATTTGTCGCGCCCCTGTTACGCTTGAACAATTGTCGTTTAGAGGAGGCCGAGAAGACATTACTGCAACACGGCAAGCACAGCGAACTGATAATATTGTACCAAACTAAAGGGCAGCACACGAAGGCGCTTCAGCTGTTGCGGGAACAAGCCAAGCAGCCGGACTCCAGCCTCGAGGGATATCGGGGCACTAAGAACTACTTGCAACAGTTAGGTGCCGAGCATATAAATTTAATATTCAATTTTTCCGATTGGATTCTGAAAGAGAACCCCGAGGAGGGCTTGAAGATATTCACGGAAGATAAAATCGAAGTCGAAAACTTACCCCGTCCGAAAGTACTTGACTTCTTACTGAGAGAACACGAATCGCTTGTGATACCTTACCTGGAACACATTATACACACGTGGAACGATACGAATCCATTGTTCCACGACGCCCTAATAAACATGTACAGGGAGAAGATAATTAATAAAAAAGCGAATATTACCGAAGAAGAATTGCTGCATACGAAGTCGAAGCTGTTGGCTTTTCTAGAAAAATCGACTCACTACACGCCCGAGAGAGTGTTGCTGCATTTCCCTACCGATGGATTGTTTGAGGAGCGCGCCGTGGTGCTGGGGAAGCTGGGACGACACGAAATGGCGCTCGCAATATATGTGCTGATCTTGGGGGACGTGGAAAGAGCGATGCGATACTGTGAAAACGTGAGTGAAAATCTCAAGGACAAGAGTCAAGACGTTTACGTTATCCTCATGAAGATATTGATGAATCCCGATCAGATTGCCGCCCTTAGCGGACCGCTCGCCAACGTACCAAGACACCCGAAAACATCGGTGCCCGATCTAGAAACGGCTCTGGATATATTGGAAAAACACGCTGATAAGATCTCTCCCTTAAAAGCACTCGCAGTATTACCAGATTCGGTGCCGCTTAGCCGATTGAAACACTTTCTGGAAAGCTCATTAGAGGCTCAACTCACGTTGAAACGGAGAATGCAAATACTCAAAGGACTGTTGTATGCGGAACATATGCAGGTCCAAGAGCTGAAGCATTACCACGAATCAAAGAGTGTTGTTATAAACGACTACGACGTGTGTCAAGTTTGCAAGAAGCGCTTCGGTCATCAGAGCGCGTTCGTGCGTTATCCAAACGGTGACATTGTTCATTATTCGTGTAGAAGCGATAAATAG

Protein

MERKSVKFQEFNVKSDNWDSYIDRLKYCFEANGIESDTVKKANFFTVCGAEVVETVLALITPRKSSDVTFVEIENILTKHYSPKPNEISMSYKFYKRDQAPNELASDYIATLRKISSGCNFIELERMLRDRLVCGMSDHKLQYELLKREQLRYEDVVHAMVSSESAGKDVRMIQSTSTDTFGMTQGEVVTSHAEPMECKKKGHIEKICTSKKNNKRKSINYTDDEFQAQLNGIYNVNTNSRRVPAYEVNVLLDGVPVIMEVDSGAAYSLVNLHTWRRIHSHMPLEPLMNKLCTWNNSAVRVDGQATVLVQYKDIKCSLKVIVAQGSGPNLLGRNWFEALGICVNVNTIKEINVTEVILNKHYEVFRAGLGTYRGEPVNIHLKPGAVPRFMKARPVPYAIKERVEKEINRLEAEGVLRPVTFSEWATPVVPIVKKNGDVRLCGDYRSTVNQATESDTYPMPTASEVFATISGGNIFSTLDLDRAYTQVVVTDDTARLLTLNTCKGLYTVHRLAFGVKASPGIFQRLMTALLAGISGVAVLIDDIIVSGRTAQEMTQRLDAVLDRIEKAGLRLNKGKCKFVRKQVEFLGFIIDAEGIHPAPSKVESILKTPKPKNVQELQAFLGLYNFYERFIPHKATILEPLHRLLDKAHKWQWSEREQKSFEVAKRLLSSELTLAHYDLEKPLILTCDSSDYGVGAVLSHVMSDRQERPVAMGSRTLHMHERRYSQLDKEATAIMFGINKFQNYLMGRSFTIVTDHKPLLGIFDPRKPIPNMLSPRLTRIALVLTSHNYDIIYKPGKCIGHADGLSRWPQPVSEQPEEQLQDILLLAETPDEFPIDVAQIANATKRDSVLSRVRHHILSGWPAKINDESLRPYWLHRNEFSLNEDCILIGNRVIIPPSLRQPVLDCLHKTHSGIVQTKAIARSYVWWPQMNKDIEKLVKNCNRCLENRHMPPRTTYEWITPTKPWSRINVDFAGPFQNKIFLIIVDAYSRWPEVFIVNNMTSSTVVKHLRTIFATHGLCEVLVSDNGTPFVSEETRKFLESNKIRHITTAPHHPSTNGLAERMVQTVKDKLRKMDGISWDIKLPNILLGLRTIPCATTNKSPCELLMNRRLRTLLDTLHPDNLQTCKRNEQIERNGNKKIRHTDVGQKVMYRNFGNGSRWLPGTVVYRNGPGNYQVETGDGTVVNRHIDQLLKKETDSGQETAERGKESEVDCEAVNVEEQEDMEDISSSLEEQEIIEIPSPDKWAEMLGIPPEPESGYSGENNLLLGTRQGHLLMYSLSTNNEEQKYQVHLLRYRKNFSKKPIQQIEVILDENLLLCLTDSTLATYNINGVNFPLIKTFEQTKGASLFALDCKVSSSNGAASSDVRLCVAVRRKLQVYCGSKGEFKHMLDLNIPDVPKVMAWGLQYLCVGFKAEYTLYDVSDGKPKELFPTSSSKSLEPTISKYTETSFLVGRDQTSVLIEESNKNVDIKKTIKWKEAPLAVVWDQPFVLGLLQDQVVVQTVEPAFYIQSLSELNKARLMYRCKRGLIFVASVGQVWCLSLVDITKQRQQLLKDKQFQIAIELTTLSQCSPEEKKQKIHSIQVLNALEDFDNKCYTQAMQEFAKLNTDPADVIKLFPELDGRTDGEKSGKLKGKDLENALNALIPYLVELRRKIGKGSPEPNGSPPQEGTSQRNVAQQMELIDTTLLKCYLMTNDAFVAPLLRLNNCRLEEAEKTLLQHGKHSELIILYQTKGQHTKALQLLREQAKQPDSSLEGYRGTKNYLQQLGAEHINLIFNFSDWILKENPEEGLKIFTEDKIEVENLPRPKVLDFLLREHESLVIPYLEHIIHTWNDTNPLFHDALINMYREKIINKKANITEEELLHTKSKLLAFLEKSTHYTPERVLLHFPTDGLFEERAVVLGKLGRHEMALAIYVLILGDVERAMRYCENVSENLKDKSQDVYVILMKILMNPDQIAALSGPLANVPRHPKTSVPDLETALDILEKHADKISPLKALAVLPDSVPLSRLKHFLESSLEAQLTLKRRMQILKGLLYAEHMQVQELKHYHESKSVVINDYDVCQVCKKRFGHQSAFVRYPNGDIVHYSCRSDK

Uniprot

NA

ProteinModelPortal

NA

PDB

4OL8 E-value=4.98129e-53, Score=532

KEGG

101738047 K20183 Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39 | (RefSeq) vam6/Vps39-

GO

GO:0015074 GO:0003676 GO:0006886 GO:0016192 GO:0005839 GO:0051603 GO:0051028 GO:0005622 GO:0006810 GO:0003824

Length:

2092

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.145470000000001

Exp number, first 60 AAs:

0.08835

Total prob of N-in:

0.00616

outside

1 - 2092

Pi

223.607119

Theta

178.497471

Tajima's D

2.014073

CLR

0.364861

CSRT

0.881305934703265

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree