Silkworm Genome Informatics Database

Gene

KWMTBOMO10954

Annotation

PREDICTED:_homeobox_protein_vnd_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr18(-):8150530-8159876 View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear Reliability : 4.466

CDS

ATGTCCCGCCCAGTCGCTGAAGCGTATTCATTGGTGGAGGCGAATGGAGCACCCTCGAATGCAGACGCGACGTCGCAAGGCGTAGCACGTGTTCGCGTGGGTGATTCGGAAGCCATCAAGATTATTCCAAAAACGAGTTCTCCCGGTCGGGAGATGAAGTGCGAGGAGGGTGAAAGTGCGCGGTCACCGCCGCCGCCGCTGCTGCCGCCGGCTTCGCTACTCGCTTGGAGTCCTATTTTACTACCACCATGGGGACCTGCTTTTCTACCGGCACTTTACCCGGCGGCTTTTCGTTCAGCATTTCCTGGATTATTGGACAGTATGAAGATGCCCGGTCAGAGGCCAGGCTTCCAGATCTCCGATATCCTTGGACTCAATGAAGGCAAAGGTCTAGAAAACAACACCACCCAGGGAGGGCTTGGTTGCCCTTTGGATCTACCATCCTATGCACCTCCTCATCATCCATATTCACATGAGCTTTTGAGGCATCACCAGCCGTGGCTGTCTATGGATCATCACGAGAACAACGGTACTTTAGGCCAGCAAGCAAGTCCCGATAGTACATCTCGTGCTTCGGAATTATCGTATGTCGGTCCGTCGGCAACATCGCCACACCTCGCAGAGCCGCGCTCCGACCACGACCATGAGCACGATGATCACGACATCGAACAAGACGAGGAAAATGACCACGACCACCTCAATGCCTCAAACGATCCCAATTTAACACATAAAAAACGAAAACGCCGCGTTCTCTTCTCTAAAGCACAAACGTACGAACTAGAGAGAAGATTTCGCCAGCAGAGATACTTATCTGCCCCCGAAAGAGAGCATCTGGCCAGCTTGATTCGATTGACGCCAACGCAAGTGAAGATTTGGTTCCAAAATCACAGGTACAAGACGAAACGTGCTGTTCAAGAAAAAGGCGCACATGATTTGAACGTCGGTGGATTGAATTCTCCTCGACGCGTCGCCGTACCGGTTTTAGTGAAGGATGGTAGACCTTGCGTCGGTAAGCCGGACGGATTACCTCCCCTAGGTATGGCTTTACCTCCCTACCATCAATCCATGCATCACCAACAAGTAGCGGGCCATCCGCCTCAGTCGAGCGGCTGCTGGTGGTGA

Protein

MSRPVAEAYSLVEANGAPSNADATSQGVARVRVGDSEAIKIIPKTSSPGREMKCEEGESARSPPPPLLPPASLLAWSPILLPPWGPAFLPALYPAAFRSAFPGLLDSMKMPGQRPGFQISDILGLNEGKGLENNTTQGGLGCPLDLPSYAPPHHPYSHELLRHHQPWLSMDHHENNGTLGQQASPDSTSRASELSYVGPSATSPHLAEPRSDHDHEHDDHDIEQDEENDHDHLNASNDPNLTHKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAVQEKGAHDLNVGGLNSPRRVAVPVLVKDGRPCVGKPDGLPPLGMALPPYHQSMHHQQVAGHPPQSSGCWW

Uniprot

A0A2A4JZF0 A0A194RRN0 A0A2H1VDG7 A0A2A4K0I6 A0A194PGV9 A0A3S2LXZ6 + More
A0A212EZJ6 D2A2S4 A0A1B6KTS8 A0A1B0DE06 A0A3L8DPK3 A0A1W4W6G2 A0A1L8DI99 E2C578

Pubmed

26354079 22118469 18362917 19820115 30249741 20798317 + More

EMBL

NWSH01000347 PCG77189.1 KQ459765 KPJ20054.1 ODYU01001964 SOQ38883.1 + More
PCG77190.1 KQ459604 KPI92537.1 RSAL01000119 RVE46744.1 AGBW02011299 OWR46864.1 KQ971339 EFA01467.2 GEBQ01025121 JAT14856.1 AJVK01014676 AJVK01014677 QOIP01000006 RLU21748.1 GFDF01007987 JAV06097.1 GL452767 EFN76899.1

Proteomes

UP000218220 UP000053240 UP000053268 UP000283053 UP000007151 UP000007266 + More
UP000092462 UP000279307 UP000192223 UP000008237

Pfam

PF00046 Homeodomain

Interpro

IPR009057   Homeobox-like_sf        + More
IPR020479   Homeobox_metazoa
IPR001356   Homeobox_dom
IPR017970   Homeobox_CS

SUPFAM

SSF46689 SSF46689

CDD

cd00086 homeodomain

ProteinModelPortal

A0A2A4JZF0 A0A194RRN0 A0A2H1VDG7 A0A2A4K0I6 A0A194PGV9 A0A3S2LXZ6 + More
A0A212EZJ6 D2A2S4 A0A1B6KTS8 A0A1B0DE06 A0A3L8DPK3 A0A1W4W6G2 A0A1L8DI99 E2C578

PDB

1VND E-value=1.83336e-27, Score=304

KEGG

101737778 K08029 homeobox protein Nkx-2.2 | (RefSeq) homeobox protein vnd

GO

GO:0043565 GO:0006355 GO:0005634 GO:0003677 GO:0030154 GO:0045944 GO:0003700 GO:0000978 GO:0016620 GO:0005839 GO:0051603 GO:0051028 GO:0005622 GO:0006810 GO:0003824

Subcellular location

Nucleus

Length:

373

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.15264

Exp number, first 60 AAs:

1e-05

Total prob of N-in:

0.01546

outside

1 - 373

Pi

246.441399

Theta

166.543453

Tajima's D

-2.232389

CLR

1.251175

CSRT

0.00519974001299935

Interpretation

Possibly Positive selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics