SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10950
Annotation
PREDICTED:_nuclear_factor_related_to_kappa-B-binding_protein_isoform_X1_[Bombyx_mori]
Location
Bomo_Chr18(-):8066868-8070006      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.442
 

Sequence

CDS
ATGGAAACTGATCATAGCTATAGTGGAGAGAGCAGTAGCTCTACTGATACTTCCAGCGGGAGTTCTGAGGGCGATGAAGAAGAGATGGAGCCGGTACGGATTCTAGGACATAGTTTGGAGCTACCTCAGGAACTATGCGAAGACTATTCACTATTCAAAGAGTTTTTTTCTACGAAAACTTGGGAATCTTTAGATGAAAAACACAAAGAACATTTAATGAAATTTTTACCAAAATTCACGGAAAATCAAGAAGAGGAAACAACAAAAACTATAGAAATGCTTTTTCATCATGAACCTTTTCATTTCCAATCACCTTTCAGCACTTTCTATAATAATTTAAGGCAGGGAAATTACAGACCTGATATAGCCAAAATGAAGAAATTTCTTAAAAAAGCAAGGGCTAAACAGCAGAGGCATAGGATAAAATCTTATTATGCCAAGTTATTACCTGAAGTTTTGCTATCACGAGAGAGGTTATTAGCAGCAGTTAAAGCAGCTCCACCTGGCCCAGCACCTAGAATTCCTTCATTGCCGCCAAAATCATCATCAAAAAATAATTTCAAACCGTTGTACTTGAGAGCCAAGCAAAGATATTTTGAAGAGCTTGCAGCTATTAGAAGTGAAGTAGGGGGTGATGAGTCTGATGATGAGAACTACCCTGATGGACCTCCAGAACAGTTTGTAAAGAAAAAGAAAGGAAATAATGTTACAAATGCTGATGGGAATATTTCTGGTACTCTTGCTGGTTCTGAACAAACACTTCCAACGTCACTTGAATGTTTGAAAAATGTCCTAATGGCACACAGATCAAGAAGACAGTATAGAGAAAACCATCCAGAGTTAAACATAAATGGAATAACATTAGAAGATATAAAACAACGAGTGGCACTTGTAAATGGTGCAAAAAAACTAATGTTTGGAGGACCAAAGATTGCATCTCCAATCCAAAAAATTAAAAAAGCTCCTAAAAAAGATGCAGTAGTAAAAAAAATGCTGGAGAATAAAATATCAAAGAAATGCAAAGAAGAAACTGAGAATCCTGACATCAAACCTTTGCTTCAAAACATAAAAATCAAAGTTGAAAAAGAAGGTAGTGACTCTGAAAGCTCATTTTTAGAAAATGTGATGAGTCCTAAGCAAATGAAGAAACACATGGAACAAGTTGAAATCAAACAGGAAATAGGAGCAGAACCAAATTATGATGATCAGTTTGATGCATTAATAAAGCAAGAACCACCAGATTCCATGCCCATTTCAAATATTTCTAAAATTGATCAACCAATTCCCATTAAACTTGAAGACTTGGATGGCATAGATATGATGGCCCTACCAATAGAGTTAGCTGACGACACTGGAGAAGTTATTAAAGCGAAGTGTAAAGATAGGGACGAGCTTCTGGATGTGGATGAATCTTTAACTGAAACAACTCACGCTAACTTCCTGTCGCTTGTTCGAGCTTTGTTTCCGGCGAGGGCGGCTCACCGGGCCTCGAAACAACAGCTACATGCAAGATGTGCTGCTGTTATGCGCTCGCCCATAGCGCCTCTAAACACTTGGTATAACTCATGCGACGATTGGTGTGCAGAATTAGATTCGGCTTTGGACTTTTTGGCCGGGGAAAGAGGTCCCCATCCTGATGACTTTGTACCATACTTGCAGTACATGCCAGAAAATCAGATGTACCAGTGGATTGGTGCCGGTCGGGATTGTGATGCAATTCTCGGTCGCCTCTGTGAACGGTGGCTTCGAGCTGCTGACGAGCCTTCCTTTATTGCTGAAGCACCGCCCCCAAGGTAA
Protein
METDHSYSGESSSSTDTSSGSSEGDEEEMEPVRILGHSLELPQELCEDYSLFKEFFSTKTWESLDEKHKEHLMKFLPKFTENQEEETTKTIEMLFHHEPFHFQSPFSTFYNNLRQGNYRPDIAKMKKFLKKARAKQQRHRIKSYYAKLLPEVLLSRERLLAAVKAAPPGPAPRIPSLPPKSSSKNNFKPLYLRAKQRYFEELAAIRSEVGGDESDDENYPDGPPEQFVKKKKGNNVTNADGNISGTLAGSEQTLPTSLECLKNVLMAHRSRRQYRENHPELNINGITLEDIKQRVALVNGAKKLMFGGPKIASPIQKIKKAPKKDAVVKKMLENKISKKCKEETENPDIKPLLQNIKIKVEKEGSDSESSFLENVMSPKQMKKHMEQVEIKQEIGAEPNYDDQFDALIKQEPPDSMPISNISKIDQPIPIKLEDLDGIDMMALPIELADDTGEVIKAKCKDRDELLDVDESLTETTHANFLSLVRALFPARAAHRASKQQLHARCAAVMRSPIAPLNTWYNSCDDWCAELDSALDFLAGERGPHPDDFVPYLQYMPENQMYQWIGAGRDCDAILGRLCERWLRAADEPSFIAEAPPPR

Summary

Uniprot
A0A2W1BN36   A0A3S2TI29   A0A2H1WH65   A0A2A4K0A5   A0A194RRN9   A0A194PGM3   + More
A0A212EZF0   E0VM25   A0A084W5P1   A0A0L7QV04   E2B6I3   A0A182IM75   E2A8G2   A0A182HGR0   A0A026W7G4   A0A3L8DBQ5   A0A182VSQ8   A0A182N8Y3   A0A2M4A782   A0A2M4A7R2   A0A2M4A760  
Pubmed
28756777    26354079    22118469    20566863    24438588    20798317    + More
24508170    30249741   
EMBL
KZ150127    PZC73103.1    RSAL01000123    RVE46624.1    ODYU01008324    SOQ51814.1    + More
NWSH01000347    PCG77203.1    KQ459765    KPJ20059.1    KQ459604    KPI92541.1    AGBW02011299    OWR46860.1    DS235286    EEB14431.1    ATLV01020677    KE525304    KFB45535.1    KQ414727    KOC62468.1    GL445973    EFN88727.1    GL437593    EFN70282.1    APCN01007267    KK107356    EZA52042.1    QOIP01000010    RLU17940.1    GGFK01003294    MBW36615.1    GGFK01003488    MBW36809.1    GGFK01003274    MBW36595.1   
Proteomes
UP000283053    UP000218220    UP000053240    UP000053268    UP000007151    UP000009046    + More
UP000030765    UP000053825    UP000008237    UP000075880    UP000000311    UP000075840    UP000053097    UP000279307    UP000075920    UP000075884   
Pfam
PF14465   NFRKB_winged        + More
PF00168   C2
Interpro
IPR024867   NFRKB        + More
IPR038106   NFRKB_winged_sf       
IPR025220   NFRKB_winged_dom       
IPR029063   SAM-dependent_MTases       
IPR000008   C2_dom       
IPR035892   C2_domain_sf       
SUPFAM
SSF53335   SSF53335       
Gene 3D
1.10.10.2430     2.60.40.150    
ProteinModelPortal
A0A2W1BN36   A0A3S2TI29   A0A2H1WH65   A0A2A4K0A5   A0A194RRN9   A0A194PGM3   + More
A0A212EZF0   E0VM25   A0A084W5P1   A0A0L7QV04   E2B6I3   A0A182IM75   E2A8G2   A0A182HGR0   A0A026W7G4   A0A3L8DBQ5   A0A182VSQ8   A0A182N8Y3   A0A2M4A782   A0A2M4A7R2   A0A2M4A760  
PDB
4UF5     E-value=1.26242e-09,     Score=153

Ontologies

KEGG
101746855    K11671 nuclear factor related to kappa-B-binding protein | (RefSeq) nuclear factor related to kappa-
GO
GO:0031011   GO:0016021  
PANTHER
PTHR13052  

Topology

Length:
598
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00015
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00066
outside
1  -  598
 
 

Population Genetic Test Statistics

Pi
178.78735
Theta
164.444491
Tajima's D
0.600126
CLR
27.912311
CSRT
0.535223238838058
Interpretation
Uncertain
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