Silkworm Genome Informatics Database

Gene

KWMTBOMO10949

Annotation

PREDICTED:_nuclear_factor_related_to_kappa-B-binding_protein_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr18(-):8052389-8066406 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.448

CDS

ATGATGCGAACACCGACTAGCTTTGAAGTAGCGGAATTCAGAGCGCAGGAACGACGGAGATTTTCATCGGCAGGAAAACCATTTACGTACATTCAACATGGATACCGGTCAGTGGTGGGTCCGTGTGCTCGGTCGTGGTGGATGGGCGCGACGGGCGCGGCGTTACTCCGCGCGGAACGCCCCCGCCCCGCCGCCTTCCCCGCGCTCGTCCGCGACGCGCTCGCGCGCCTCCCCAACGGCGAGGGCACCAGACATCACGTCCTTATCTTGCTCAAGATGTCACAGTGGATAGCACCTTGTAGTGATCAAGCTCTGTTAAGTGCAGTTTCGGCAGCGTTAGACAAGTTAAATTCTATAAAAAGGGATCCAATCGTGAAGTACGACCAGCGCACTGCTACCTGGACATATTTGCATAGGAATAGAACGGAAGAAGACTGGTTGAAATTGAGCAGTCGAGGTAAGAAGTTCGGTGCCACGTCCTTCCCCTCCCTGCCGGCGCCGCCCACCCCGCCCCCCGTCAGACTGCAGACGCCGGCCAAGGAACGCCCTCTGTCTCCTCCGCGAGGGGTCGAATTAGAAGTGGCGAACGTGGAGGAAGTAATCGAAGCGTCTGACAGCGACGTGGACGTTGACGACACCAGCACGTCGGTGCCGCACCTCTCCTCGGCGCAGCTCCTCATGCAAGCGACGCAACTCCACAAGCCGACACTCGCGCTCTCCAACAAACCCAAAGGGAAACTGATCGCCGCAGCGTCTCCTAAATCCAAACCTCAAATAACGAAGCTTCCGTCCAATAAGCAGACCAATAAACAGGCCACCCTGATGACGCAATCCGTGAAACAAGCCAGCTTGATGGCGGCGACCATGAAGCAAGTAATGACGCAAGCGAAAGTCGCACAAGTGAAGTCCCAACAGACTCCTAAAGTAAGCGTTAGTCCTCCGACGCCAAAACAAACCAACCCTCAGACGAAAACAGTCATTAACTCGGTGGCCAAACAGAATGCGACACAGGTCAAAACTGTTTGTCTGCCGAAAACAGATTTGAAATCTACGCCGAAACAGACGAAGGTCGCGCTCGTGAAGACCTCTGCCAGTCAAGCTGCGACCCCCGCAACCTCCTTGGGTCTGGCTTCCAGTCAGATATCGAAGTCCTTGCCGTCGCTTATTGTGACGCCTCAGAAGTCACCGCTCATGAAGCAGAGGCTGTTGCAGAGGACCGACACGTCACCGGCTATTGTGACTATGGCTAGCCAAAAAACGCCTCCAACGACTGTGACTTTGATACATCCCACCACTGAAACAACGGGCCCTCAAAGCGTAACAAAGGTTGGTCAAGGGACTCGTTCATTGTTAATAAAACCGTCGGCTGTACAAACTACTGTAACGGCGTCGACTACCATACCTTCGACACAGGTGACACCTATACAACGACGTGGCATCGTAAGAGTGCTCAGTCCTGCAACACCTTCCTCGGGGAAGTCACTGATATCGCCACGAGCTCTCATGCAAACTGGCACTACAACTGCAAAGAAACGCACAATTATATCCACAACCGCTTCTGTCACGACTGTTGCTCAGAGCGCAGAAAGCAAAAGCACAGTATCGAGCAGTACTCCCACCGCTGTGACGTCATCTGTGACTACGAGAACCATTCAGCTGGCGGGCGGTCGCACCGTGCAGCTGGCCGCCAACCAGACCGTGCACCTGCCCGGCGGACAGGCCGTGCAGCTCAGCTCCGGGCACACCTTGCAGTTGTCGTCGCTGCAGCTGCCCATGCACAGCGTCCGTCTGCCGAGCGGACAGACGGTCCAGCTGGCCTCGCCGCAGACGATGCAGGCGGTCAGAGTATCGAACGCTGCTGTGAAAACGTCCACTGTTCGATCTCAGCAATCCGCATCCGTTGTCAAGAATCTACAAACGTCGCAGTCTACTGTTCAGATCCCGGTGTCTACCGTGCAACTGGCCGGCCAGACCGTCCAGATCGCGGGACAGACGGTTCAGTTGGCCGGCCAGAGCGTGCAACTCACCGGACACACGGTCAAGCTGCCCAGCGGACAGAGTGTTCAAGTGGCCAGCCAGAGCGTGTTGCCGTCGCAGAGCGTCCAGCTGCCGAGCGGTCAGACCGTCCAGCTGACCGGTGGCAACGTTCAAACTTTACAACTGACCGGTTCCAACGTCCAAAACTCACAAATTTCAAGCGGACAAAGCGTGCAGTTAAGTTCTCAAACAGTGCAGTTAGGCGGACAGACCGTGCAGCTGCCCGGCGGACAAACATTACAGCTCTCTGCCGGCCAGACGGTGCAGCTATCCAGCGGACAAACCCTGCAGTTGGCCAGTGGACAGACCGTGCATTTAGCAAATCAAGGAACAAAGTCTGTTGCACAAGTCATCCGCAGCCAAGCGGCTACCGACAAAGCAACTTCCGCGCAACCGATAGTGGCGAAATTGCTCACCAACGCTCAGGGTCAAATGGTGTCGGTGGAGGGCGGCGTCCGCGGCGGCGTGCGCGTGCTGGCGCCGGCCGCGCGCCTCGCCCGCCCGCTGCTGCTCACGGCCGCCAAACCGCTGCACAACATCATCTTGCAGCAAAGCGATGGCGCTCGCGTGCCCTCAAGCGGAGGCTCTTCGTCGCCGCAGACCTTGGTACTCAGCAACCTTGGAGCACAAACAGTCTCAACGTCAACCACCACCGCGCCGGTGTTAAAATTACAGCAGGTGAATCCATTACAACAAGTTAAACTCGGGCAGGGGATTAAAATTCAACAGGCGGGAACGAACGCGACAGTAGCGACATCTAGCGGCGTCCGCAGCGTCGTGATGGACGGACAACAGCTGAAGCTGGTCGGCGGGCGGCACGTGCTCGCGCGGATCCTACGGCCGGCGCATCAGCCCCCGTAA

Protein

MMRTPTSFEVAEFRAQERRRFSSAGKPFTYIQHGYRSVVGPCARSWWMGATGAALLRAERPRPAAFPALVRDALARLPNGEGTRHHVLILLKMSQWIAPCSDQALLSAVSAALDKLNSIKRDPIVKYDQRTATWTYLHRNRTEEDWLKLSSRGKKFGATSFPSLPAPPTPPPVRLQTPAKERPLSPPRGVELEVANVEEVIEASDSDVDVDDTSTSVPHLSSAQLLMQATQLHKPTLALSNKPKGKLIAAASPKSKPQITKLPSNKQTNKQATLMTQSVKQASLMAATMKQVMTQAKVAQVKSQQTPKVSVSPPTPKQTNPQTKTVINSVAKQNATQVKTVCLPKTDLKSTPKQTKVALVKTSASQAATPATSLGLASSQISKSLPSLIVTPQKSPLMKQRLLQRTDTSPAIVTMASQKTPPTTVTLIHPTTETTGPQSVTKVGQGTRSLLIKPSAVQTTVTASTTIPSTQVTPIQRRGIVRVLSPATPSSGKSLISPRALMQTGTTTAKKRTIISTTASVTTVAQSAESKSTVSSSTPTAVTSSVTTRTIQLAGGRTVQLAANQTVHLPGGQAVQLSSGHTLQLSSLQLPMHSVRLPSGQTVQLASPQTMQAVRVSNAAVKTSTVRSQQSASVVKNLQTSQSTVQIPVSTVQLAGQTVQIAGQTVQLAGQSVQLTGHTVKLPSGQSVQVASQSVLPSQSVQLPSGQTVQLTGGNVQTLQLTGSNVQNSQISSGQSVQLSSQTVQLGGQTVQLPGGQTLQLSAGQTVQLSSGQTLQLASGQTVHLANQGTKSVAQVIRSQAATDKATSAQPIVAKLLTNAQGQMVSVEGGVRGGVRVLAPAARLARPLLLTAAKPLHNIILQQSDGARVPSSGGSSSPQTLVLSNLGAQTVSTSTTTAPVLKLQQVNPLQQVKLGQGIKIQQAGTNATVATSSGVRSVVMDGQQLKLVGGRHVLARILRPAHQPP

Uniprot

A0A3S2TI29 A0A2H1WH65 A0A194PGM3 A0A2A4JYW6 A0A194RRN9

Pubmed

26354079

EMBL

RSAL01000123 RVE46624.1 ODYU01008324 SOQ51814.1 KQ459604 KPI92541.1 + More
NWSH01000347 PCG77207.1 KQ459765 KPJ20059.1

Proteomes

UP000283053 UP000053268 UP000218220 UP000053240

Pfam

PF14465 NFRKB_winged

Interpro

IPR024867   NFRKB        + More
IPR038106   NFRKB_winged_sf
IPR025220   NFRKB_winged_dom

Gene 3D

1.10.10.2430

ProteinModelPortal

A0A3S2TI29 A0A2H1WH65 A0A194PGM3 A0A2A4JYW6 A0A194RRN9

KEGG

101746855 K11671 nuclear factor related to kappa-B-binding protein | (RefSeq) nuclear factor related to kappa-

GO

GO:0031011

PANTHER

PTHR13052

Length:

965

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01623

Exp number, first 60 AAs:

0.01522

Total prob of N-in:

0.00074

outside

1 - 965

Pi

200.751641

Theta

158.94521

Tajima's D

0.767693

CLR

0.199702

CSRT

0.588570571471426

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics