Silkworm Genome Informatics Database

Gene

KWMTBOMO10947

Pre Gene Modal

BGIBMGA008337

Annotation

hypothetical_protein_KGM_19145_[Danaus_plexippus]

Location

Bomo_Chr18(-):7899860-7929302 View in EpiBrowser

Transcription factor

zf-CCCH

Location in the cell

Nuclear Reliability : 3.678

CDS

ATGAATGGGAACATAGGCGGTGCAATTGGACCAATCGGTGCTAACTCAGTCTCAAGTGGTCTAAGCTGGGAGCAGCATCCAGTGCTGTCGCGCGCTTCCTCTGTACCAGCGCATCGTGCCTTAGCCGGTCTCTTAGACCGTCTGGGTCATCGCCGTCTCGAACGCACCACCAGTGAACCGGCTCCTCCGCCACCAGCCACAAGTCGCTACAAGACCGAGCTCTGCCGACCGTTTGAAGAAGCGGGGGTTTGTAAATATGGGGATAAATGCCAATTTGCTCACGGCGTCCGCGAACTACGCAATCTTCAGCGTCATCCTAAATACAAGACGGAGCTGTGTCGCACTTTCCATTCGGTTGGCTTCTGTCCTTATGGACCGCGTTGCCATTTCGTGCATAACGCAGAGGAAGCAAGACGCAGAGAACCATCGTCGCCAGGAGGTTCATTGGCATCGCTCTCATCGGGCGGATCTATGGCGTCGTATATGAGCGACGGGTCGCGATCGCCACGCTCGCCGCATTCTCCATTGACGCCTCACTCTCCACCTGCGATGTCGCCACCAGCACAGGCCACAGCTTTCGCTTTTCGCCGCACGAACTCCCCCGATCCGGAAGACGACCGACTGCCCGTTTTTAACCGACTCTCATCGGCTCTCGGCGATCTCGTCATCGCTTAG

Protein

MNGNIGGAIGPIGANSVSSGLSWEQHPVLSRASSVPAHRALAGLLDRLGHRRLERTTSEPAPPPPATSRYKTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEEARRREPSSPGGSLASLSSGGSMASYMSDGSRSPRSPHSPLTPHSPPAMSPPAQATAFAFRRTNSPDPEDDRLPVFNRLSSALGDLVIA

Uniprot

H9JFP0 A0A2H1WM67 A0A2W1BFQ9 A0A2A4K1C4 A0A0L7L9K1 S4PLX2 + More
A0A212FCD4 A0A194PHL7 A0A194RQC2 A0A1E1WHG8

Pubmed

19121390 28756777 26227816 23622113 22118469 26354079 + More

EMBL

BABH01002025 ODYU01009607 SOQ54160.1 KZ150127 PZC73101.1 NWSH01000289 + More
PCG77728.1 JTDY01002183 KOB71926.1 GAIX01000371 JAA92189.1 AGBW02009208 OWR51378.1 KQ459604 KPI92543.1 KQ459765 KPJ20063.1 GDQN01006085 GDQN01004619 GDQN01001512 JAT84969.1 JAT86435.1 JAT89542.1

Proteomes

UP000005204 UP000218220 UP000037510 UP000007151 UP000053268 UP000053240 + More

PRIDE

H9JFP0

Pfam

PF00642 zf-CCCH

Interpro

IPR000571 Znf_CCCH + More
IPR036855 Znf_CCCH_sf

SUPFAM

SSF90229 SSF90229

ProteinModelPortal

H9JFP0 A0A2H1WM67 A0A2W1BFQ9 A0A2A4K1C4 A0A0L7L9K1 S4PLX2 + More
A0A212FCD4 A0A194PHL7 A0A194RQC2 A0A1E1WHG8

PDB

1RGO E-value=1.58927e-29, Score=319

KEGG

101737257 K15308 tristetraprolin | (RefSeq) protein TIS11

GO

GO:0046872 GO:0008152 GO:0016491 GO:0016620 GO:0005839 GO:0051603 GO:0051028 GO:0005622 GO:0006810 GO:0003824

Length:

224

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01499

Exp number, first 60 AAs:

0.01444

Total prob of N-in:

0.02976

outside

1 - 224

Pi

235.203774

Theta

191.242513

Tajima's D

0.46155

CLR

0.429642

CSRT

0.504774761261937

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics