Gene

KWMTBOMO10941

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr18(+):7664013-7666247      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.579

CDS

ATGCGCAAAAGTGTCAGGTACCACCGCCTCTCGGCTACGACTGGGTCCTTCGGCTACGACTGGGTCCTGCGGGGTGCCCTTCACAGCCCTCTCCCGGGCCTACGCGTTGTGTGTTACGCGGATGACACGTTAGTCATAGCTCGGGGGAAAGACTACCATGAGTCTGCCCGTCTTGCCTGCGCAGGGGTGGCATTCGTCGTCGGTAATATTCGGAGGTTGGGCCTCGAGGTGGCGCTCGAAAAATCCCAGGCCCTGCTGTTTCACAGGGCTGGAAGAGAGCCGCCGCCCGGGGCCCACCTGGTGATTGGAGGCGTCCGCGTCGAGGTTGGGGTAACCGGGTTGCGGTACCTCGGCCTCGAATTGGACGGTCGTTGGAACTTCCGCGCTCACTTCGAGAAGTTAGGCCCTCGGCTGATGGCGACGGCTGGCTCGTTGAGCCGGCTCTTGCCAAACGTTGGGGGGCCCGACGCAGTAGTACGTCGTCTCTACGTGGGGGTGGTGCGGTCCATGGCACTATATGGGGCCCCCGTGTGGTGCCGCGCCCTGACTCGCAGGAACATCGCGGCCCTGCGACGCCCGCAGCGTGCAATCGCGGTCAGGGCGATCCGTGGATACCGCACTGTCTCCTTCGAGGCGGCGTGCGTTCTCGCCGGGACGCTTCCCTGGGACCTGGAGGCGGAGGCACTCGCCGCCGATTATGCGTGGCGATGTGACCTTCGCGACAGGGGGGAACCACGTCCCGGAGAAGGAGCGATTAGAGCGCGGAGGCTCCAATCTCGGCGGTCTGTGCTGGAGGCGTGGTCTCGCCGCTTGGCGAACCCGTCGGCCGGTCTCCGGACCGTCGAGGCGGTGCGCCCGGTCCTCGCGGAATGGGCGAACCGTGACCAAGGGCGTCTCACCTTCCGGTTGACGCAGATGCTTACCGGCCATGGGTGTTTTGGCCGGTACCTGCATCGCATCGCCCGGAGGGAACCGACGATGGAGTGTCAGATGGAGTGTGACTGCGACGAGGACACGGTCGAGCATACGCTCGCATATTGCCCCGCATGGCTGGAGCAACGCCGTGTCCTTGTCTCGCAAATAGGACCGGACTTATCGCTACCGACCGTCGTGGCCACGATGCTCGGCAGCGATGAGTCCTGGAAGGCGATGCTCGACTTCTGCGAGTACACCATCTCGCAGAAGGAGGCGGCGGAACGAGAGAGGGAGAGCTCATCCCTCTCCGCACCTATCCGTCGCCGCCGAGCCGGGGGCCGGAGAAGGGCCTTTGCCCGACTCCGGCCCCTGTAG

Protein

MRKSVRYHRLSATTGSFGYDWVLRGALHSPLPGLRVVCYADDTLVIARGKDYHESARLACAGVAFVVGNIRRLGLEVALEKSQALLFHRAGREPPPGAHLVIGGVRVEVGVTGLRYLGLELDGRWNFRAHFEKLGPRLMATAGSLSRLLPNVGGPDAVVRRLYVGVVRSMALYGAPVWCRALTRRNIAALRRPQRAIAVRAIRGYRTVSFEAACVLAGTLPWDLEAEALAADYAWRCDLRDRGEPRPGEGAIRARRLQSRRSVLEAWSRRLANPSAGLRTVEAVRPVLAEWANRDQGRLTFRLTQMLTGHGCFGRYLHRIARREPTMECQMECDCDEDTVEHTLAYCPAWLEQRRVLVSQIGPDLSLPTVVATMLGSDESWKAMLDFCEYTISQKEAAERERESSSLSAPIRRRRAGGRRRAFARLRPL

Uniprot

Q868Q4   A0A2W1B333   Q8MY27   Q8MY31   Q8MY33   Q8MY35   + More
A0A3S2N998   A0A0J7N1D9   A0A2W1C3J5   O01419   A0A0J7N7H9   A0A0J7MY07   A0A0J7KIY5   A0A0J7JZ13   A0A0J7KJG6   A0A0J7JZF7   A0A0J7KIW1   A0A0J7KQK3   E2BVR6   A0A0J7KIM6   A0A0J7KJH4   A0A3S2LNH8   A0A0J7KLT9   A0A0J7KL06   A0A0J7N7S8   A0A0J7KPR0   A0A3L8DDV9   A0A0J7KYD2   A0A0J7K3R6   A0A0J7KF37   A0A0J7NMN5   A0A0J7KPZ3   A0A3L8D2G3   A0A0J7KMU1   A0A0J7KP92   A0A0J7KFG9   A0A0J7KWU5   A0A0J7K3F1   A0A0J7KC11   A0A0J7NAV8   A0A0J7K3R2   A0A0J7KLH8   A0A2S2P6S8   A0A0J7KGJ6   A0A0J7KRB8   A0A0J7MY17   A0A0J7N0R3   A0A0J7KFH2   A0A2S2NME4   A0A0J7KW81   A0A0J7NFZ0   A0A0J7NDI6   A0A0J7KMG5   X1WJY4   J9KJG8   J9LJ80   X1WPI5   A0A2H8TR36   A0A1B6HLL2   A0A2S2NJ82   A0A0J7KF40   J9KNG8   A0A2S2PSC1   A0A2S2P488   A0A2H8THF8   A0A2S2PEZ7   N6TYN9   J9KV04   Q868S6   F7IYU8   A0A139W940   J9KLZ3  

Pubmed

12644555    28756777    9092665    20798317    30249741    23537049    + More
18362917    19820115   

EMBL

AB090825    BAC57926.1    KZ150386    PZC71062.1    AB078935    BAC06462.1    + More
AB078931    BAC06456.1    AB078930    BAC06454.1    AB078929    BAC06452.1    RSAL01000481    RVE41577.1    LBMM01012027    KMQ86470.1    KZ149896    PZC78733.1    D85594    BAA19776.1    LBMM01008861    KMQ88580.1    LBMM01014132    KMQ85305.1    LBMM01006954    KMQ90166.1    LBMM01019839    KMQ83438.1    LBMM01006671    KMQ90407.1    LBMM01019838    KMQ83439.1    LBMM01006725    KMQ90373.1    LBMM01004272    KMQ92618.1    GL450953    EFN80213.1    LBMM01007036    KMQ90099.1    LBMM01006657    KMQ90417.1    RSAL01003504    RVE40273.1    LBMM01005733    KMQ91252.1    LBMM01006063    KMQ90967.1    LBMM01008682    KMQ88705.1    LBMM01004634    KMQ92224.1    QOIP01000010    RLU18098.1    LBMM01002052    KMQ95336.1    LBMM01015018    KMQ84954.1    LBMM01008448    KMQ88867.1    LBMM01003245    KMQ93755.1    LBMM01004505    KMQ92346.1    QOIP01000031    RLU14697.1    LBMM01005216    KMQ91703.1    LBMM01004697    KMQ92167.1    LBMM01008349    KMQ88951.1    LBMM01002480    KMQ94776.1    LBMM01015025    KMQ84953.1    LBMM01009738    KMQ87908.1    LBMM01007425    KMQ89740.1    LBMM01014956    KMQ84982.1    LBMM01005948    KMQ91066.1    GGMR01012534    MBY25153.1    LBMM01007659    KMQ89538.1    LBMM01003988    KMQ92922.1    LBMM01014122    KMQ85315.1    LBMM01012412    KMQ86235.1    LBMM01008278    KMQ89009.1    GGMR01005740    MBY18359.1    KMQ94772.1    LBMM01005474    KMQ91485.1    LBMM01006496    KMQ90570.1    LBMM01005465    KMQ91492.1    ABLF02011238    ABLF02041886    ABLF02015311    ABLF02015320    ABLF02034009    ABLF02043484    ABLF02016099    ABLF02041594    GFXV01003903    MBW15708.1    GECU01032129    JAS75577.1    GGMR01004600    MBY17219.1    LBMM01008422    KMQ88894.1    ABLF02005203    ABLF02041316    GGMR01019609    MBY32228.1    GGMR01011682    MBY24301.1    GFXV01001748    MBW13553.1    GGMR01015159    MBY27778.1    APGK01005465    KB736249    ENN83233.1    ABLF02004674    ABLF02004675    ABLF02004676    ABLF02011637    AB090814    BAC57904.1    AB593321    BAK38639.1    KQ972691    KXZ75806.1    ABLF02023401    ABLF02029423    ABLF02060278   

Proteomes

UP000283053    UP000036403    UP000008237    UP000279307    UP000007819    UP000019118    + More
UP000007266   

PRIDE

Q868Q4    O01419   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF07776   zf-AD
PF00096   zf-C2H2
PF01553   Acyltransferase
PF03372   Exo_endo_phos
PF01421   Reprolysin
PF00098   zf-CCHC

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR012934   Znf_AD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR002123   Plipid/glycerol_acylTrfase       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR024079   MetalloPept_cat_dom_sf       
IPR001590   Peptidase_M12B       

SUPFAM

SSF56219   SSF56219        + More
SSF57667   SSF57667       
SSF57756   SSF57756       

Gene 3D

3.60.10.10     3.40.390.10    

ProteinModelPortal

Q868Q4   A0A2W1B333   Q8MY27   Q8MY31   Q8MY33   Q8MY35   + More
A0A3S2N998   A0A0J7N1D9   A0A2W1C3J5   O01419   A0A0J7N7H9   A0A0J7MY07   A0A0J7KIY5   A0A0J7JZ13   A0A0J7KJG6   A0A0J7JZF7   A0A0J7KIW1   A0A0J7KQK3   E2BVR6   A0A0J7KIM6   A0A0J7KJH4   A0A3S2LNH8   A0A0J7KLT9   A0A0J7KL06   A0A0J7N7S8   A0A0J7KPR0   A0A3L8DDV9   A0A0J7KYD2   A0A0J7K3R6   A0A0J7KF37   A0A0J7NMN5   A0A0J7KPZ3   A0A3L8D2G3   A0A0J7KMU1   A0A0J7KP92   A0A0J7KFG9   A0A0J7KWU5   A0A0J7K3F1   A0A0J7KC11   A0A0J7NAV8   A0A0J7K3R2   A0A0J7KLH8   A0A2S2P6S8   A0A0J7KGJ6   A0A0J7KRB8   A0A0J7MY17   A0A0J7N0R3   A0A0J7KFH2   A0A2S2NME4   A0A0J7KW81   A0A0J7NFZ0   A0A0J7NDI6   A0A0J7KMG5   X1WJY4   J9KJG8   J9LJ80   X1WPI5   A0A2H8TR36   A0A1B6HLL2   A0A2S2NJ82   A0A0J7KF40   J9KNG8   A0A2S2PSC1   A0A2S2P488   A0A2H8THF8   A0A2S2PEZ7   N6TYN9   J9KV04   Q868S6   F7IYU8   A0A139W940   J9KLZ3  

KEGG

105841478    no KO assigned | (RefSeq) uncharacterized LOC105841478

GO

GO:0003964   GO:0016746   GO:0016021   GO:0008270   GO:0003676  

Length:

429

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.57162

Exp number, first 60 AAs:

0.11094

Total prob of N-in:

0.06034

outside

1  -  429

 

 

Pi

12.081789

Theta

15.071664

Tajima's D

0.016836

CLR

5.045151

CSRT

0.387430628468577

Interpretation

Uncertain