Gene

KWMTBOMO10940

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr18(+):7633313-7633650      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.111 Mitochondrial   Reliability : 1.604 Nuclear   Reliability : 1.394

CDS

ATGGAGGAGACCAGAATGCCAAGACAACTACTATATCGCAAACCAGAGGGCCGCAGAAGTCGTGGAAGGCCCAGACTCCGATGGTTAGATGTCGTAGAGCACGACGTCAAAGTTATCGGTGTCAAGAACTGGAAGGAGAAAGTACTGAACAGAGCAGTCTGGAGAGACATACTGGACCAGGCTAAGGCCCACCCTGGGCTGTAA

Protein

MEETRMPRQLLYRKPEGRRSRGRPRLRWLDVVEHDVKVIGVKNWKEKVLNRAVWRDILDQAKAHPGL

Uniprot

D7F170   T1HWQ9   A0A170WMB5   A0A2P8Y9M7   A0A2P8XKB3   A0A2J7PG01   + More
A0A2P8XTX4   A0A2J7QEV0   A0A2P8XB61   A0A2L2YRP8   A0A2J7QHD3   A0A2J7QUH3   A0A2P8XJ60   A0A2J7PD61   A0A2J7QSM9   A0A2P8YW35   A0A2J7RQQ3   A0A2P8ZG52   A0A2P8YH41   A0A2P8Z4P3   A0A2J7QD67   A0A2J7PU43   A0A2P8Z444   A0A2P8ZHX9   A0A2P8XEI5   A0A2P8ZCD0   A0A2P8XID6   A0A2P8Z6Z1   A0A2P8ZH05   A0A2P8XSV9   A0A023F0H0   A0A2P8XS55   A0A2P8YW46   A0A2P8XM30   A0A2P8Z3P5   A0A2P8ZFE5   A0A0K8S3X2  

Pubmed

20470440    29403074    26561354    25474469   

EMBL

FJ265555    ADI61823.1    ACPB03020582    ACPB03020583    ACPB03020584    ACPB03020585    + More
ACPB03020586    GEMB01005428    JAR97892.1    PYGN01000774    PSN40963.1    PYGN01001863    PSN32449.1    NEVH01025635    PNF15262.1    PYGN01001366    PSN35354.1    NEVH01015305    PNF27111.1    PYGN01005139    PSN29233.1    IAAA01044986    LAA10035.1    NEVH01013978    PNF27990.1    NEVH01010582    PNF32229.1    PYGN01001951    PSN32040.1    NEVH01026393    PNF14276.1    NEVH01011876    PNF31577.1    PYGN01000326    PSN48462.1    NEVH01000618    PNF43171.1    PYGN01000068    PSN55468.1    PYGN01000599    PSN43576.1    PYGN01000196    PSN51468.1    NEVH01015827    PNF26525.1    NEVH01021208    PNF19834.1    PYGN01000205    PSN51268.1    PYGN01000052    PSN56080.1    PYGN01002486    PSN30409.1    PYGN01000106    PSN54154.1    PYGN01002025    PSN31769.1    PYGN01000168    PSN52268.1    PYGN01000059    PSN55784.1    PYGN01001417    PSN34994.1    GBBI01004263    JAC14449.1    PYGN01001438    PSN34841.1    PYGN01000325    PSN48468.1    PYGN01001740    PSN33045.1    PYGN01000211    PSN51124.1    PYGN01000074    PSN55227.1    GBRD01017846    JAG47981.1   

Proteomes

UP000015103    UP000245037    UP000235965   

PRIDE

D7F170   

Pfam

PF00078   RVT_1        + More
PF03372   Exo_endo_phos
PF01386   Ribosomal_L25p

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR020056   Rbsml_L25/Gln-tRNA_synth_N       
IPR011035   Ribosomal_L25/Gln-tRNA_synth       
IPR029751   Ribosomal_L25       
IPR027124   Swc5/CFDP2       

SUPFAM

SSF56219   SSF56219        + More
SSF50715   SSF50715       

Gene 3D

3.60.10.10     2.40.240.10    

CDD

cd00495  Ribosomal_L25_TL5_CTC

ProteinModelPortal

D7F170   T1HWQ9   A0A170WMB5   A0A2P8Y9M7   A0A2P8XKB3   A0A2J7PG01   + More
A0A2P8XTX4   A0A2J7QEV0   A0A2P8XB61   A0A2L2YRP8   A0A2J7QHD3   A0A2J7QUH3   A0A2P8XJ60   A0A2J7PD61   A0A2J7QSM9   A0A2P8YW35   A0A2J7RQQ3   A0A2P8ZG52   A0A2P8YH41   A0A2P8Z4P3   A0A2J7QD67   A0A2J7PU43   A0A2P8Z444   A0A2P8ZHX9   A0A2P8XEI5   A0A2P8ZCD0   A0A2P8XID6   A0A2P8Z6Z1   A0A2P8ZH05   A0A2P8XSV9   A0A023F0H0   A0A2P8XS55   A0A2P8YW46   A0A2P8XM30   A0A2P8Z3P5   A0A2P8ZFE5   A0A0K8S3X2  

KEGG

101744029    no KO assigned | (RefSeq) nascent polypeptide-associated complex subunit alpha, muscle-specific form

GO

GO:0003964   GO:0004519   GO:0003735   GO:0008097   GO:0006412   GO:0005840  

PANTHER

PTHR23227  

Length:

67

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.41708

outside

1  -  67

 

 

Pi

313.55125

Theta

203.343439

Tajima's D

1.704827

CLR

0

CSRT

0.826958652067397

Interpretation

Uncertain