Gene

KWMTBOMO10939

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr18(+):7604993-7606849      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.712 PlasmaMembrane   Reliability : 1.245

CDS

ATGCCATTTTCTGTTAAGCTTTCCTACCAAGTAGAGATAACTCGGCAGCTGCCTATTCGCAAAGCACCAATTCCAAATACCGTCTTGGGGGATATAGCCTTGGAGAGCAAGGGCGAGGCTCTTGCTGTGAGCCTTGATATTGCGAAGGCCTTCGACAGGGTCTGGCATAGGGCACTTCTGTCGAAGCTACCATCTTACGGAATCCCCGAGGGTCTCTGCAAGTGGATCGCTAGCTTTTTGGATGGGCGGAGCATCACGGTCGTTGTAGACGGTGACTGTTCTGATACCATGACCATTAACGCTGGCGTTCCACAAGGTTCGGTGCTCTCCCCCACGCTTTTCATCCTGTATATCAATGACATGCTGTCTATTGATGGCATGCATTGCTATGCGGATGACAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGGAGCGTGGTGCAAGAGAGACGATCAAAGCTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTCTCCAAATGGGGTGAATTGAACTTGGTTCAATTCAACCCGTTAAAGACACAAGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATTGGGATACTTGGGGTCGACATTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCGAAGCGGTACTTCACGCCTGGACAAAGGCTTTTGCTTTATAAAGCACAAGTCCGGCCTCGCGTGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGCCGTTCGGATTGTCGATAATCCCGGTCTCACGGATCGTTTGGAACCTCTGGGTCTGCGGAGGGACTTCGGTTCCCTCTGTATTTTGTACCGTATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCGGCATCTCGTTTTTACCATCGCACCGCCCGCCACCGGAGTAGAGTTCATCCATACTACCTGGAGCCACTGCGGTCATCCACAGTGCGTTTCCAGAGGTCTTTTTTGCCACGTACCATCCGGCTATGGAATGAGCTCCCCTCCACGGTGTTTCCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTGTGGAGAGTATTAAGCGGTAGGCAGCGGCTTGGCTCTGCCCCTGGCATTGCTGAAGTCCATGGGCGACGGTAA

Protein

MPFSVKLSYQVEITRQLPIRKAPIPNTVLGDIALESKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSRSVVQERRSKLVSEVENSLGRVSKWGELNLVQFNPLKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPGLTDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR

Uniprot

Q6UV17   A0A3S2LP03   A0A3S2LQP1   A0A3S2NMS5   A0A3S2NTH0   A0A0P4VXU0   + More
A0A3D5S1K1   A0A1E1XGQ7   A0A0P4VTV9   A0A131XQR9   A0A2H9T3F5   A0A2H9T4Y5   A0A0P4VVV8   A0A131Y4I8   A0A1E1XNL1   A0A210QQ08   A0A147BNQ9   A0A2H9T4F1   A0A147BU27   A0A2H9T2Z5   A0A2H9T361   A0A1G4M5I2   A0A2H9T4Q5   A0A2H9T2R7   A0A131XT39   A0A1E1XPS6   A0A1E1X2R3   A0A2H9T5P0   A0A2H9T2V7   W4ZGQ7   A0A1E1X2P4   W4ZIH4   A0A1G4M3N1   A0A147BKM4   A0A1E1X2T1   W4Y3F1   A0A1E1X2P5   A0A147BNC9   A0A147BMA3   A0A2G8KET5   A0A1E1XGC7   A0A147BMF5   A0A147BKN8   A0A2H9T4U7   A0A210QEX7   A0A2H9T2U6   K7EZ61   K7F115   K7EWB0   K7EYW0   K7EW64   A0A147BJZ1   K7F0H6   A0A131Y4Q4   A0A2I0UC10   K7F012   K7EY42   W4YLV9   K7EWE8   K7EY14   K7EX25   A0A2H9T4N9   A0A2I0U3N1   K7EWJ2   K7EWV3   A0A1E1XNW6   K7EYM6   K7F1N2   A0A147BQ97   K7F152   K7EYU0   K7F1S9  

Pubmed

30148503    28503490    29150518    29209593    28812685    29652888    + More
29023486    17381049   

EMBL

AY359886    AAQ57129.1    RSAL01002067    RVE40593.1    RSAL01000422    RVE41792.1    + More
RSAL01000002    RVE54942.1    RSAL01000090    RVE48098.1    GDRN01105059    JAI57791.1    DPOC01000269    HCX22453.1    GFAC01000919    JAT98269.1    GDRN01111334    JAI56796.1    GEFM01006417    JAP69379.1    NSIT01000412    PJE77717.1    NSIT01000218    PJE78268.1    GDRN01111277    JAI56804.1    GEFM01002394    JAP73402.1    GFAA01002514    JAU00921.1    NEDP02002425    OWF50811.1    GEGO01003312    JAR92092.1    NSIT01000271    PJE78081.1    GEGO01001118    JAR94286.1    NSIT01000477    PJE77602.1    NSIT01000462    PJE77627.1    FLMD02000280    SCV66640.1    NSIT01000239    PJE78188.1    NSIT01000538    PJE77518.1    GEFM01006421    JAP69375.1    GFAA01002385    JAU01050.1    GFAC01005670    JAT93518.1    NSIT01000164    PJE78524.1    NSIT01000532    PJE77527.1    AAGJ04096877    GFAC01005653    JAT93535.1    AAGJ04095885    FLMD02000154    SCV66010.1    GEGO01004061    JAR91343.1    GFAC01005646    JAT93542.1    AAGJ04090645    GFAC01005665    JAT93523.1    GEGO01003111    JAR92293.1    GEGO01003518    JAR91886.1    MRZV01000639    PIK46517.1    GFAC01000861    JAT98327.1    GEGO01003427    JAR91977.1    GEGO01004056    JAR91348.1    NSIT01000225    PJE78229.1    NEDP02004020    OWF47171.1    NSIT01000539    PJE77517.1    AGCU01081420    AGCU01164164    AGCU01168427    AGCU01046616    AGCU01055496    GEGO01004295    JAR91109.1    AGCU01096477    GEFM01002324    JAP73472.1    KZ505886    PKU43598.1    AGCU01135984    AGCU01190758    AAGJ04119818    AGCU01003726    AGCU01156992    AGCU01018596    NSIT01000234    PJE78200.1    KZ506232    PKU40632.1    AGCU01061849    AGCU01002265    GFAA01002479    JAU00956.1    AGCU01156312    AGCU01115937    GEGO01002473    JAR92931.1    AGCU01119662    AGCU01001404    AGCU01038874    AGCU01124718   

Proteomes

UP000283053    UP000242188    UP000007110    UP000230750    UP000007267   

PRIDE

Q6UV17   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF01585   G-patch
PF04939   RRS1
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR034653   SPF45_RRM       
IPR003954   RRM_dom_euk       
IPR000467   G_patch_dom       
IPR040052   RBM17       
IPR035979   RBD_domain_sf       
IPR007023   Ribosom_reg       

SUPFAM

SSF56219   SSF56219        + More
SSF54928   SSF54928       

Gene 3D

3.60.10.10     3.30.70.330    

CDD

cd12647  RRM_UHM_SPF45

ProteinModelPortal

Q6UV17   A0A3S2LP03   A0A3S2LQP1   A0A3S2NMS5   A0A3S2NTH0   A0A0P4VXU0   + More
A0A3D5S1K1   A0A1E1XGQ7   A0A0P4VTV9   A0A131XQR9   A0A2H9T3F5   A0A2H9T4Y5   A0A0P4VVV8   A0A131Y4I8   A0A1E1XNL1   A0A210QQ08   A0A147BNQ9   A0A2H9T4F1   A0A147BU27   A0A2H9T2Z5   A0A2H9T361   A0A1G4M5I2   A0A2H9T4Q5   A0A2H9T2R7   A0A131XT39   A0A1E1XPS6   A0A1E1X2R3   A0A2H9T5P0   A0A2H9T2V7   W4ZGQ7   A0A1E1X2P4   W4ZIH4   A0A1G4M3N1   A0A147BKM4   A0A1E1X2T1   W4Y3F1   A0A1E1X2P5   A0A147BNC9   A0A147BMA3   A0A2G8KET5   A0A1E1XGC7   A0A147BMF5   A0A147BKN8   A0A2H9T4U7   A0A210QEX7   A0A2H9T2U6   K7EZ61   K7F115   K7EWB0   K7EYW0   K7EW64   A0A147BJZ1   K7F0H6   A0A131Y4Q4   A0A2I0UC10   K7F012   K7EY42   W4YLV9   K7EWE8   K7EY14   K7EX25   A0A2H9T4N9   A0A2I0U3N1   K7EWJ2   K7EWV3   A0A1E1XNW6   K7EYM6   K7F1N2   A0A147BQ97   K7F152   K7EYU0   K7F1S9  

KEGG

105842661    no KO assigned | (RefSeq) uncharacterized LOC105842661

GO

GO:0003964   GO:0004519   GO:0003723   GO:0016021  

PANTHER

PTHR13288   PTHR17602  

Length:

425

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04123

Exp number, first 60 AAs:

6e-05

Total prob of N-in:

0.00447

outside

1  -  425

 

 

Pi

201.196731

Theta

69.845403

Tajima's D

0.817974

CLR

17.78281

CSRT

0.602669866506675

Interpretation

Uncertain