Gene

KWMTBOMO10933

Annotation

PREDICTED:_ribonuclease_3_[Bombyx_mori]

Location

Bomo_Chr18(-):7435795-7453002      View in EpiBrowser

Full name

XK-related protein      

Location in the cell

Nuclear   Reliability : 4.089

CDS

ATGTCTATTCCTCCAGTTGATTACAGTGTTCCACCTCCGCCAATTCCGAGGCTTCCAGTTAATATTCCGTTACCACCCCACCCACCCCCGCCTATCTTTCCGAGAGCAATGCCTTTATATACCAGACCGCCACCAGTACTTCCGATGCTATCAGTACCGCCAGTACCATACCCTCATTCACGCATGCCTCCAGCTCCTGTTCCACAGTTACCTGTACCCAACTTTATGCCCACCATTGATATACATTCTGTCCCTCCACCACATCCATCCCCTCACATAGGACATTCTCCACATGGATATTCTGATAGGAGCAGGAGGGAGAGGGATAGAGATAGAGAACAGAGGAATCCGACAAGTCATAGTCCTAGATATTGCTCTAGAAGTCCACCAAGATACAGTTCAAAATTAAACAGAAGTCCTTCTCGATATAGCTATAGAGAAAGAGAGAAAGAAAGATATTACATGGAGAGAGAGAAAAAGTATTATGAAGGAAGACGAGAATATGGTAGAAGAAAATATGAATATGATGTTCGCCGCAGTGAATCTCAATACAAAGATTATAGAAGCCACAGTAGATGTGAAGGTAGGGATAGATCACCAAGCAGAAGGGCGCATTCTCCTAGTAGGGAGTCCAATAGAGAAAGTCTGACGAGAGAAATGTCACTTCACCGACAAGAATCACTTTTAGGCAAACCAATGACAGATCGTGAAAAGATTTTGGAAGAATATAGGAAAAACTACTGTAGAACTTCTGAAGATTTTATACAGAAAATGGAACAGTGGTCGAAAGAACATCTTTCTGAAGGAGAAGAGTCGTCAATGTGGTATAGGAGTTCACCAGCTGAGCTCTATTACAAAGAAGTCCAAAATGGTGAGGGAGTCGAACAAACTTTAAAACTGCAGAAACTTTGTGAAGTATTCATGAAGAAACTCATTGAGAGGGGACGTAATGCAAGGCCTGAGGTTGATGAGCTCCCACCCTTAAAGCCACCTAAATCGAAAATGTGCAAACATAAACTTGATGAAAAAAGCTCATCGTCGTCATCATCGTCATCATCATCAGAAAGTGACGGATGTTTAGATGAAGAGGGCTTGCAGGGCTATAGTGATAGGATAATGCTAGAGCTACAGCGGAAACAGAGTCATCCCAGGAGATTGCACCCTGAAATGTGGTTTAACAACACCGGCGAAATGAACGGCGGTCCGTTGTGTCGGTGTAGCGCCCGAGCCCGTCGTCACGGCATGCGGCACGGCGTCTACGCCGGCGAGGAATCATTCCCGAAATGTATTCCTGAACGAAGCAATATCGACAAACTGTATCATTATCGTATAACCGTGTCGCCTCCTACAAACTTTTTAATCAAAGCACCAACGATCATAGCTCACGACGAACACGAATTTCTATTTTCTGGCTTCTCATTGTTCTCGCACTACAAACTTGCCAAGTTGCCCATGTGCAAAGTCATAAGGTTCAATATTGAATACACAATTCTATATGTGGAAGAACCGGCACCAAGAAATTTTACCATACAAGAATTAAGTCTATTCGAGGAATTCCTATTTACGGAGTTACTAGAGTTGATTGATTTGGACCTGGGAAAAGCCACGGATACAACATGTTCACAATTCCATTTTATGCCTCGATTTGTAAGATTTTTACCTGAAGGAGGATGTGAGGTACTCTCAATGTGTGAAGTTATAAAGTATTTGATTGACGAAAGTGGTTTACTGATACCGATGGAAAAGTTGAGTGACGTACATGAAATGGATCACTACACCTGGCAAAAGTTTGTTGATAAAATCAAAGGTATGATAGTGACTTACCCCGGTAAGAAGCCGTGCTCGGTGCGCGTGGACCAGCTCGACCGAAGTCCGCCGACGGGCTCCGAAGCCGTTAAGAACCCTAAAGCATTGAAGAAATACTTCCCTGAAATCGTACACTTTGGTATACGTCCGCCGCAGCTCAGTTACGCTGGCAACCCCGAGTATCAAAAAGCATGGCGTTATTACGTTAAATACCGCCATTTAATAGCGAATATGGCGAAGACTTCTTATAAGGAGAGACAGAAATTAGCCGCTAAAGAGGCTAAGCTGCAAGAGATGCGCACTCAGTCTAAAATGAAAAGGGACGTGACTGTCGCTATATCGTCGGAAGGGTTCCACACTACCGGACTCATGTGTGACGTCGTGCAGCACGCGATGTTAATACCGGTGTTGGTGCGTCACCTCCGGTTCCACAAGTCGCTCGAAAAACTCGAGAAGAAAATCGGTTATGTTTTTAAGCAACGAGCATTGCTCCAGACTGCATTAACTCATCCATCGTATAGAGAAAACTTTGGTACCAACCCTGACCACGCCAGGAACAGTCTCACTAACTGCGGTATACGACAACCGGAGTACGGGGACCGAAGAATACATTATACAAGAAAGAAGGGCATAGTAACACTCATCAAAATAATGTCCAGTTTCGGGAAAATCAGTGAGACAGAATCAGAGATTAAGCACAACGAACGTTTGGAATTTTTGGGAGATGCTGTAGTGGAATTCTTGTCTTCGATTCATCTTTTTAAGATGTTTCCTGGGCTGGCAGAAGGAGGACTCGCTACTTACAGAGCTGCCATTGTACAGAATCAACATTTAGCGCAACTTGCTAAGAATATAAACCTTGAACAATTCATGTTGTACGCCCACGGTTCGGACCTGTGTCGCGACGTAGTGATGCGACACGCGATGGCGAACTGCTTCGAAGCTCTCATGGGCGCATTGTTTCTCGACGCTGGACTTGAGGTAGCGGACCGAGTCTTCTCTTTGGCATTGTGGCACAATGAATCGGAGCTGCTTGAAGTTTGGACGAAGGAAAGAGCACATCCATTACAAGAACAAGAACCTTTAGGCGATAGGAAATATATAAAAGACTTCGAATTCTTACAAAAATTGACCGACTTCGAAGAATCTATAGGGGTACAGTTCAAACACATACGTTTGTTGGCTCGTGCGTTCACGGATCGCTCAGTCGGCTTCACTCTCCTCACGCTCGGATCCAACCAGCGCTTAGAGTTCCTCGGCGACACGGTGCTCCAGCTGGTCGTGTCCGATCGACTGTACAGACACTTCCCTGATCATCACGAAGGCCATTTGTCGCTGTTACGGTCGTCTCTGGTCAACAACAGAACACAGTCTATGGTTTGCGACGATCTGAACATGTCTGCGTACGCCATATACAATAATCCTAAAGCGAAACCGACCACAAAGAAACATAAGGCTGATTTACTCGAGGCTTTCTTGGGAGCATTGTTTATTGATAAGAACCTGGAGTACTGTCAGGCGTTCTGCAACGCGTGTCTGTTTCCGCGCCTGCAGCAGTTCATCATGAACCAAGACTGGAACGATCCCAAGTCTAAATTACAGCAGTGCTGCCTCACGTTGCGGTCCATGGAGGGGGGCGAGCCGGACATACCAGTCTACAAAGTAATCCAGTGTCTGGGACCTACGAACACGCGAGTGTATACTGTGGGCGTGTATTTCCGCGGGAAGAGATTGGCGGCCGCACGCGGACACTCCATACAGGAGGCCGAGATGAACGCGGCCGAAGAAGCCTTGAATACTGCATACGGTTTATTCCCGCAATTAGATCACCAGAAACGTATAATAGCGAAGAGCGTACGTAAGAAGAAGGGGGATCGCGAGGATCCGTCCGAGAATAGTTCGCACGGAATGCACGACGACAACGTACCGAAAGCTTACAGGCTCGGCAGCAAACCTGACAGTTCTGATGAAAGCAGCGTCCACAGCGGATCCGAGGATCCCGAGGATCCCGAGTCGCCGGCCAAATCGGACGAGGACAGCGGCCTAGACAGCGACACCGAGTCGGAGCTGCCGGGCAAACTCAAAAACGTCCAAGTCAGCAGTCTGCTCAGCGACATGGAGAAAATAAAACAGGAACTCATCAAGAACAACGAGTATGAGAAACTCAAGGAGAAATGCAGACGGTCCGACTCAGATGAAGAATGA

Protein

MSIPPVDYSVPPPPIPRLPVNIPLPPHPPPPIFPRAMPLYTRPPPVLPMLSVPPVPYPHSRMPPAPVPQLPVPNFMPTIDIHSVPPPHPSPHIGHSPHGYSDRSRRERDRDREQRNPTSHSPRYCSRSPPRYSSKLNRSPSRYSYREREKERYYMEREKKYYEGRREYGRRKYEYDVRRSESQYKDYRSHSRCEGRDRSPSRRAHSPSRESNRESLTREMSLHRQESLLGKPMTDREKILEEYRKNYCRTSEDFIQKMEQWSKEHLSEGEESSMWYRSSPAELYYKEVQNGEGVEQTLKLQKLCEVFMKKLIERGRNARPEVDELPPLKPPKSKMCKHKLDEKSSSSSSSSSSSESDGCLDEEGLQGYSDRIMLELQRKQSHPRRLHPEMWFNNTGEMNGGPLCRCSARARRHGMRHGVYAGEESFPKCIPERSNIDKLYHYRITVSPPTNFLIKAPTIIAHDEHEFLFSGFSLFSHYKLAKLPMCKVIRFNIEYTILYVEEPAPRNFTIQELSLFEEFLFTELLELIDLDLGKATDTTCSQFHFMPRFVRFLPEGGCEVLSMCEVIKYLIDESGLLIPMEKLSDVHEMDHYTWQKFVDKIKGMIVTYPGKKPCSVRVDQLDRSPPTGSEAVKNPKALKKYFPEIVHFGIRPPQLSYAGNPEYQKAWRYYVKYRHLIANMAKTSYKERQKLAAKEAKLQEMRTQSKMKRDVTVAISSEGFHTTGLMCDVVQHAMLIPVLVRHLRFHKSLEKLEKKIGYVFKQRALLQTALTHPSYRENFGTNPDHARNSLTNCGIRQPEYGDRRIHYTRKKGIVTLIKIMSSFGKISETESEIKHNERLEFLGDAVVEFLSSIHLFKMFPGLAEGGLATYRAAIVQNQHLAQLAKNINLEQFMLYAHGSDLCRDVVMRHAMANCFEALMGALFLDAGLEVADRVFSLALWHNESELLEVWTKERAHPLQEQEPLGDRKYIKDFEFLQKLTDFEESIGVQFKHIRLLARAFTDRSVGFTLLTLGSNQRLEFLGDTVLQLVVSDRLYRHFPDHHEGHLSLLRSSLVNNRTQSMVCDDLNMSAYAIYNNPKAKPTTKKHKADLLEAFLGALFIDKNLEYCQAFCNACLFPRLQQFIMNQDWNDPKSKLQQCCLTLRSMEGGEPDIPVYKVIQCLGPTNTRVYTVGVYFRGKRLAAARGHSIQEAEMNAAEEALNTAYGLFPQLDHQKRIIAKSVRKKKGDREDPSENSSHGMHDDNVPKAYRLGSKPDSSDESSVHSGSEDPEDPESPAKSDEDSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNEYEKLKEKCRRSDSDEE

Similarity

Belongs to the XK family.

Uniprot

A0A2P1DM67   A0A2H1VJ32   A0A2W1BX45   A0A2A4K3R9   A0A212FC99   F4X4J6   + More
A0A151JV17   A0A195BCU5   A0A158NIK6   A0A151XG45   A0A195CNP1   A0A232ELJ3   E2BFD6   K7J8Y7   A0A1W4XHW0   A0A0C9QGH1   A0A154P7A7   A0A3L8DNL8   A0A0J7KXI3   A0A0M8ZSV3   A0A026W231   A0A2P1DM47   A0A2J7R7F0   A0A2I6PIZ4   A0A0L7R5L2   A0A2A3EGM8   A0A088ACD3   A0A1Y1K9T9   A0A151J2X3   A0A310SU72   A0A067QJY1   A0A182T4I3   E9I8E2   A0A182Y052   A0A182U222   A0A182V1W0   A0A182WU62   A0A182J9R8   A0A1S4GX90   A0A182JTQ4   A0A182HUS4   Q5TQK8   A0A084VN71   A0A182L1K9   A0A182W763   A0A2R7VTY1   A0A182NUA6   A0A182PMM7   A0A182MAP4   A0A182QBA2   A0A182RTC0   A0A2P1DM88   A0A1Q3G295   A0A1B6C2Y5   A0A1S4J407   W5JRG0   A0A336LWE9   A0A336LTC6   A0A336MRR9   A0A1B0G5S3   A0A1A9US91   A0A0L0CPI3   A0A2M4A4G9   A0A182H177   A0A1A9ZAW6   A0A1A9XIV2   A0A1B0BUH8   Q16YA9   A0A1J1IPR8   A0A0K8V217   A0A182FJS9   A0A034W5R4   A0A023F4I7   A0A0A1XKY5   A0A224XDC0   A0A146L6Y6   W8CEJ8   B4KQ41   A0A1A9WEI4   A0A146KXR5   A0A0A9X7Y5   K7YZ60   T1I9Z1   B4J860   A0A0M3QVP3   B4NMS8   B4MF95   B3N9C5   A0A1I8NIB3   A0A3B0JPJ8   A0A3B0JJL1   A0A139WAR5   B4GD51   E0VZ53   Q28YB7   A0A1I8P8E5   B4P256   A0A1W4VZ00  

Pubmed

28756777    22118469    21719571    21347285    28648823    20798317    + More
20075255    30249741    24508170    29267401    28004739    24845553    21282665    25244985    12364791    24438588    20966253    20920257    23761445    26108605    26483478    17510324    25348373    25474469    25830018    26823975    24495485    17994087    25401762    23232437    25315136    18362917    19820115    20566863    15632085    17550304   

EMBL

MG225429    AVK59440.1    ODYU01002848    SOQ40837.1    KZ149920    PZC77767.1    + More
NWSH01000165    PCG78905.1    AGBW02009208    OWR51365.1    GL888656    EGI58626.1    KQ981733    KYN36551.1    KQ976513    KYM82391.1    ADTU01016899    ADTU01016900    ADTU01016901    KQ982179    KYQ59268.1    KQ977481    KYN02358.1    NNAY01003549    OXU19217.1    GL448009    EFN85596.1    GBYB01013653    JAG83420.1    KQ434831    KZC07809.1    QOIP01000006    RLU22040.1    LBMM01002320    KMQ94989.1    KQ435915    KOX68839.1    KK107503    EZA49641.1    MG225416    AVK59427.1    NEVH01006733    PNF36736.1    MG266020    AUM60047.1    KQ414654    KOC66051.1    KZ288256    PBC30634.1    GEZM01088399    GEZM01088398    JAV58223.1    KQ980336    KYN16488.1    KQ760132    OAD61835.1    KK853380    KDR08017.1    GL761538    EFZ23143.1    AAAB01008964    APCN01002476    EAL39656.3    ATLV01014722    KE524984    KFB39415.1    KK854051    PTY10331.1    AXCM01002726    AXCN02000770    MG225445    AVK59456.1    GFDL01001123    JAV33922.1    GEDC01029425    GEDC01009810    JAS07873.1    JAS27488.1    ADMH02000558    ETN65888.1    UFQT01000186    SSX21291.1    SSX21292.1    UFQS01002145    UFQT01002145    SSX13324.1    SSX32760.1    CCAG010015437    JRES01000105    KNC34082.1    GGFK01002385    MBW35706.1    JXUM01102762    KQ564750    KXJ71800.1    JXJN01020712    JXJN01025590    CH477519    EAT39617.1    CVRI01000056    CRL01714.1    GDHF01019679    JAI32635.1    GAKP01009325    JAC49627.1    GBBI01002595    JAC16117.1    GBXI01002283    JAD12009.1    GFTR01008648    JAW07778.1    GDHC01014435    JAQ04194.1    GAMC01000071    JAC06485.1    CH933808    EDW08143.1    GDHC01018693    JAP99935.1    GBHO01030493    GBHO01027858    GBHO01027855    GBHO01027854    JAG13111.1    JAG15746.1    JAG15749.1    JAG15750.1    JX679517    AFX89030.1    ACPB03008226    CH916367    EDW01197.1    CP012524    ALC42743.1    CH964282    EDW85667.1    CH940667    EDW57264.1    CH954177    EDV59612.1    OUUW01000001    SPP75549.1    SPP75550.1    KQ971380    KYB24989.1    CH479181    EDW32546.1    DS235849    EEB18659.1    CM000071    EAL26049.2    CM000157    EDW89257.1   

Proteomes

UP000218220    UP000007151    UP000007755    UP000078541    UP000078540    UP000005205    + More
UP000075809    UP000078542    UP000215335    UP000008237    UP000002358    UP000192223    UP000076502    UP000279307    UP000036403    UP000053105    UP000053097    UP000235965    UP000053825    UP000242457    UP000005203    UP000078492    UP000027135    UP000075901    UP000076408    UP000075902    UP000075903    UP000076407    UP000075880    UP000075881    UP000075840    UP000007062    UP000030765    UP000075882    UP000075920    UP000075884    UP000075885    UP000075883    UP000075886    UP000075900    UP000000673    UP000092444    UP000078200    UP000037069    UP000069940    UP000249989    UP000092445    UP000092443    UP000092460    UP000008820    UP000183832    UP000069272    UP000009192    UP000091820    UP000015103    UP000001070    UP000092553    UP000007798    UP000008792    UP000008711    UP000095301    UP000268350    UP000007266    UP000008744    UP000009046    UP000001819    UP000095300    UP000002282    UP000192221   

Pfam

PF14622   Ribonucleas_3_3        + More
PF00035   dsrm
PF00636   Ribonuclease_3
PF00071   Ras
PF01693   Cauli_VI
PF00075   RNase_H
PF00687   Ribosomal_L1
PF13855   LRR_8
PF09815   XK-related

Interpro

IPR000999   RNase_III_dom        + More
IPR036389   RNase_III_sf       
IPR014720   dsRBD_dom       
IPR011907   RNase_III       
IPR005225   Small_GTP-bd_dom       
IPR001806   Small_GTPase       
IPR027417   P-loop_NTPase       
IPR012337   RNaseH-like_sf       
IPR037056   RNase_H1_N_sf       
IPR036397   RNaseH_sf       
IPR002156   RNaseH_domain       
IPR011320   RNase_H1_N       
IPR009027   Ribosomal_L9/RNase_H1_N       
IPR023674   Ribosomal_L1-like       
IPR023673   Ribosomal_L1_CS       
IPR016095   Ribosomal_L1_3-a/b-sand       
IPR028364   Ribosomal_L1/biogenesis       
IPR018629   XK-rel       
IPR000372   LRRNT       
IPR001611   Leu-rich_rpt       
IPR020846   MFS_dom       
IPR032675   LRR_dom_sf       

SUPFAM

SSF69065   SSF69065        + More
SSF52540   SSF52540       
SSF53098   SSF53098       
SSF55658   SSF55658       
SSF56808   SSF56808       

Gene 3D

1.10.1520.10     3.30.420.10     3.40.970.10     3.40.50.790     3.80.10.10    

CDD

cd00593  RIBOc
cd00048  DSRM
cd00403  Ribosomal_L1
cd06174  MFS

ProteinModelPortal

A0A2P1DM67   A0A2H1VJ32   A0A2W1BX45   A0A2A4K3R9   A0A212FC99   F4X4J6   + More
A0A151JV17   A0A195BCU5   A0A158NIK6   A0A151XG45   A0A195CNP1   A0A232ELJ3   E2BFD6   K7J8Y7   A0A1W4XHW0   A0A0C9QGH1   A0A154P7A7   A0A3L8DNL8   A0A0J7KXI3   A0A0M8ZSV3   A0A026W231   A0A2P1DM47   A0A2J7R7F0   A0A2I6PIZ4   A0A0L7R5L2   A0A2A3EGM8   A0A088ACD3   A0A1Y1K9T9   A0A151J2X3   A0A310SU72   A0A067QJY1   A0A182T4I3   E9I8E2   A0A182Y052   A0A182U222   A0A182V1W0   A0A182WU62   A0A182J9R8   A0A1S4GX90   A0A182JTQ4   A0A182HUS4   Q5TQK8   A0A084VN71   A0A182L1K9   A0A182W763   A0A2R7VTY1   A0A182NUA6   A0A182PMM7   A0A182MAP4   A0A182QBA2   A0A182RTC0   A0A2P1DM88   A0A1Q3G295   A0A1B6C2Y5   A0A1S4J407   W5JRG0   A0A336LWE9   A0A336LTC6   A0A336MRR9   A0A1B0G5S3   A0A1A9US91   A0A0L0CPI3   A0A2M4A4G9   A0A182H177   A0A1A9ZAW6   A0A1A9XIV2   A0A1B0BUH8   Q16YA9   A0A1J1IPR8   A0A0K8V217   A0A182FJS9   A0A034W5R4   A0A023F4I7   A0A0A1XKY5   A0A224XDC0   A0A146L6Y6   W8CEJ8   B4KQ41   A0A1A9WEI4   A0A146KXR5   A0A0A9X7Y5   K7YZ60   T1I9Z1   B4J860   A0A0M3QVP3   B4NMS8   B4MF95   B3N9C5   A0A1I8NIB3   A0A3B0JPJ8   A0A3B0JJL1   A0A139WAR5   B4GD51   E0VZ53   Q28YB7   A0A1I8P8E5   B4P256   A0A1W4VZ00  

PDB

5B16     E-value=2.92064e-168,     Score=1524

KEGG

101736366    K03685 ribonuclease III [EC:3.1.26.3] | (RefSeq) ribonuclease 3

PATHWAY

03008    Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)

GO

GO:0016075   GO:0003723   GO:0004525   GO:0006396   GO:0005525   GO:0003924   GO:0004523   GO:0031054   GO:0005634   GO:0031053   GO:0003725   GO:0030422   GO:0016021   GO:0030727   GO:0035070   GO:0070877   GO:0007294   GO:0016319   GO:0005839   GO:0051603   GO:0051028   GO:0005622   GO:0006810   GO:0003824  

Subcellular location

Membrane  

Length:

1336

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0016

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00001

outside

1  -  1336

 

 

Pi

242.929034

Theta

182.44861

Tajima's D

1.118203

CLR

0.04393

CSRT

0.685265736713164

Interpretation

Uncertain