Gene

KWMTBOMO10924

Annotation

PREDICTED:_tRNA_(cytidine(32)-2'-O)-methyltransferase_non-catalytic_subunit_TRM732_[Bombyx_mori]

Location

Bomo_Chr18(-):7325990-7331852      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.924

CDS

ATGTCCTTTCCTGATAAAGAGCAAAGAAAAAAGTGCTGGGACGCCAGAGATAAATACTGGGAGTGCTTAGACTCTCAGAATATCAAGGACAGTTCACAGAAACCATTAGCTTACTTAAAAACTAGAATGGATGAAATTCTCGAGATCTTGTTGTGTGCAAATGAAACCAAACAAGAAATAAAAGTGGAAATTTTACAGAAAATTTTACTGATGGCAAAAGAGTGTGATTCAGGGAAGCATTGTAAATCATGGAATAATATAGCAAACTTATTGTGGAATTCCTTGCAAAAAAAATTTAGCAAAATTGATGATCAATTATTATGTTCCATATGCTTTTATACAATTGCTTCTTACACTGATGATTGTGATAGTTCAGATTTTGCAAAAATGAGCGAAGTGGTTGAGGGAATGATAGCTCAATCTGAAAATTCAGCTTATAATGAAAACGATGAAGTAAAAATTTCAGGCATACATCAAATTGTTTTGAATTGCCTTTGGTTAAACGTTAAGGCATCGTGTGATTTAGCTTCACTCTTGGTGCAATTTAATAAGGATGACTTTGAAACATGTAGAAAATGTTTAGAACTCATTACTCACGTTCTAGAGAGCTCACGACATAAAGGGGCAATCGAAGCTGCAGGTGCAGCATTAGGAAAAGTTATACAATGTTTGACATCTTTACCTGAGGAGTCGAATATTTTAAATTCAATGAATAGCTTCCTTGAATCTAAATTAAACGAGTTGATATCTAAAGTCTATAATATGGCATCCATAACACGAAGAGGAGCAGGTCTTCCTATAATGGTTCACAGAATTGTTTCAAGTGACATGAATAAGGGAAAGCCGCTATTTCACTATTTTTTAAAGAACATATTGGAGCTGTGTAACTCCGTACTCGATGTACCCAAACTAGAAGACAATGCTTCCGTTTTAGAAAACGAAATGGATTTACCTAAAGCTATCTACATCCACTTCTTAACAAAAGTAGTAACTGACAGCAGTTTGGCTTGTGACGTAATGTACTACTCATCAGAGCTCTCCGAACTGGCGTTTTTAAACCTAACCAGCGAACATTGGCAAATAAGGAACGCAGCTTTACAACTTTATGGTGCATTGATTCCACGACAAATAGGACAAAAAAAGGCCCTTGGCACTGACGATAATACAATTGCGACGGTAGCTTGGGACGAATTGCGAACTCATTCTCCAAGACTGTGGAAGATGATCACGACCCGATTACGTTGA

Protein

MSFPDKEQRKKCWDARDKYWECLDSQNIKDSSQKPLAYLKTRMDEILEILLCANETKQEIKVEILQKILLMAKECDSGKHCKSWNNIANLLWNSLQKKFSKIDDQLLCSICFYTIASYTDDCDSSDFAKMSEVVEGMIAQSENSAYNENDEVKISGIHQIVLNCLWLNVKASCDLASLLVQFNKDDFETCRKCLELITHVLESSRHKGAIEAAGAALGKVIQCLTSLPEESNILNSMNSFLESKLNELISKVYNMASITRRGAGLPIMVHRIVSSDMNKGKPLFHYFLKNILELCNSVLDVPKLEDNASVLENEMDLPKAIYIHFLTKVVTDSSLACDVMYYSSELSELAFLNLTSEHWQIRNAALQLYGALIPRQIGQKKALGTDDNTIATVAWDELRTHSPRLWKMITTRLR

Uniprot

A0A2A4JQC0   A0A2W1BRQ1   A0A2H1WIW9   A0A1E1WDS0   A0A3S2LCL6   A0A194RQE2   + More
A0A212FCB9   A0A194PGZ3   A0A0L7L139   A0A2J7RQI0   A0A067RNS4   A0A0N0BIL1   A0A1B6CUL7   E2AII5   A0A1B6HCV8   E9J3E2   A0A1B6FPB6   A0A158NGY6   A0A195B6L4   A0A151XD39   A0A026X0R9   A0A195DWI2   F4X131   A0A0L7RIM3   A0A0P5SDJ9   A0A023EWI3   A0A0P5UJW0   A0A0P5XCI1   A0A0P5TFJ5   A0A0P5T3P2   A0A0P5DH69   A0A0P5EE48   A0A0P5CB64   A0A0P5DRY7   A0A0P6B0Q9   A0A0P6IPA9   A0A0N8CAM3   A0A0N8DFS0   A0A0P5B0V9   A0A0P5E0S4   T1HNF4   A0A0P5D5D8   A0A2R7VUL1   A0A0A1X0Z3   W8CBX0   A0A0K8W3X0   A0A034WER7   A0A2B4RLU8   A0A3M6U476   A0A195FQ20   A0A3B0K4Q7   A0A3B0JES2   Q9VB48   B4G2J1   A0A397TTQ3   Q29AA7   B3LXL3   A0A3Q4H4T6   A0A3Q3CJQ9   A0A3B4YPL8   A0A3Q1IAE7   A0A3Q1JI26   A0A3Q1FE64   A0A1S3PEX2   A0A1A8VDA2   A0A1A8VE14   A0A1S3PEX9   A0A1S3PFI2   A0A1A8ADW6   A0A1A7ZE78   A0A060W6S4  

Pubmed

28756777    26354079    22118469    26227816    24845553    20798317    + More
21282665    21347285    24508170    30249741    21719571    25474469    25830018    24495485    25348373    30382153    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17994087    15632085    25186727    24755649   

EMBL

NWSH01000789    PCG74191.1    KZ149920    PZC77759.1    ODYU01008976    SOQ53023.1    + More
GDQN01005949    JAT85105.1    RSAL01000234    RVE43796.1    KQ459765    KPJ20083.1    AGBW02009208    OWR51357.1    KQ459604    KPI92567.1    JTDY01003796    KOB68994.1    NEVH01001337    PNF43086.1    KK852559    KDR21394.1    KQ435727    KOX77842.1    GEDC01020237    JAS17061.1    GL439791    EFN66775.1    GECU01035188    JAS72518.1    GL768061    EFZ12699.1    GECZ01017749    JAS52020.1    ADTU01015329    ADTU01015330    KQ976574    KYM80146.1    KQ982294    KYQ58294.1    KK107063    QOIP01000005    EZA60989.1    RLU23088.1    KQ980204    KYN17248.1    GL888525    EGI59842.1    KQ414584    KOC70581.1    GDIP01141469    JAL62245.1    GBBI01005032    JAC13680.1    GDIP01113324    JAL90390.1    GDIP01074078    JAM29637.1    GDIP01132773    LRGB01000340    JAL70941.1    KZS19634.1    GDIP01131477    JAL72237.1    GDIP01157470    JAJ65932.1    GDIP01149568    JAJ73834.1    GDIP01177930    JAJ45472.1    GDIP01153679    JAJ69723.1    GDIP01021806    JAM81909.1    GDIQ01018824    JAN75913.1    GDIQ01098475    JAL53251.1    GDIP01038087    JAM65628.1    GDIP01195914    JAJ27488.1    GDIP01148122    JAJ75280.1    ACPB03010086    GDIP01162712    JAJ60690.1    KK854095    PTY11182.1    GBXI01009857    GBXI01009344    JAD04435.1    JAD04948.1    GAMC01004431    GAMC01004429    JAC02125.1    GDHF01006406    JAI45908.1    GAKP01004876    GAKP01004874    JAC54076.1    LSMT01000363    PFX19384.1    RCHS01002274    RMX48470.1    KQ981387    KYN42019.1    OUUW01000005    SPP80606.1    SPP80605.1    AE014297    AAF56695.2    CH479179    EDW24036.1    QKYT01000018    RIA98284.1    CM000070    EAL27443.2    CH902617    EDV43907.1    HAEJ01017374    SBS57831.1    HAEJ01016991    SBS57448.1    HADY01014789    SBP53274.1    HADY01002632    SBP41117.1    FR904417    CDQ62787.1   

Proteomes

UP000218220    UP000283053    UP000053240    UP000007151    UP000053268    UP000037510    + More
UP000235965    UP000027135    UP000053105    UP000000311    UP000005205    UP000078540    UP000075809    UP000053097    UP000279307    UP000078492    UP000007755    UP000053825    UP000076858    UP000015103    UP000225706    UP000275408    UP000078541    UP000268350    UP000000803    UP000008744    UP000265703    UP000001819    UP000007801    UP000261580    UP000264840    UP000261360    UP000265040    UP000257200    UP000087266    UP000193380   

PRIDE

Q9VB48   

Pfam

PF10350   DUF2428        + More
PF02297   COX6B
PF13532   2OG-FeII_Oxy_2

Interpro

IPR019442   DUF2428_death-receptor-like        + More
IPR016024   ARM-type_fold       
IPR003213   Cyt_c_oxidase_su6B       
IPR036549   Cyt_c_oxidase_su6B_sf       
IPR004574   Alkb       
IPR027450   AlkB-like       
IPR005123   Oxoglu/Fe-dep_dioxygenase       
IPR037151   AlkB-like_sf       
IPR021133   HEAT_type_2       
IPR011989   ARM-like       

SUPFAM

SSF48371   SSF48371        + More
SSF47694   SSF47694       

Gene 3D

2.60.120.590     1.10.10.140     1.25.10.10    

ProteinModelPortal

A0A2A4JQC0   A0A2W1BRQ1   A0A2H1WIW9   A0A1E1WDS0   A0A3S2LCL6   A0A194RQE2   + More
A0A212FCB9   A0A194PGZ3   A0A0L7L139   A0A2J7RQI0   A0A067RNS4   A0A0N0BIL1   A0A1B6CUL7   E2AII5   A0A1B6HCV8   E9J3E2   A0A1B6FPB6   A0A158NGY6   A0A195B6L4   A0A151XD39   A0A026X0R9   A0A195DWI2   F4X131   A0A0L7RIM3   A0A0P5SDJ9   A0A023EWI3   A0A0P5UJW0   A0A0P5XCI1   A0A0P5TFJ5   A0A0P5T3P2   A0A0P5DH69   A0A0P5EE48   A0A0P5CB64   A0A0P5DRY7   A0A0P6B0Q9   A0A0P6IPA9   A0A0N8CAM3   A0A0N8DFS0   A0A0P5B0V9   A0A0P5E0S4   T1HNF4   A0A0P5D5D8   A0A2R7VUL1   A0A0A1X0Z3   W8CBX0   A0A0K8W3X0   A0A034WER7   A0A2B4RLU8   A0A3M6U476   A0A195FQ20   A0A3B0K4Q7   A0A3B0JES2   Q9VB48   B4G2J1   A0A397TTQ3   Q29AA7   B3LXL3   A0A3Q4H4T6   A0A3Q3CJQ9   A0A3B4YPL8   A0A3Q1IAE7   A0A3Q1JI26   A0A3Q1FE64   A0A1S3PEX2   A0A1A8VDA2   A0A1A8VE14   A0A1S3PEX9   A0A1S3PFI2   A0A1A8ADW6   A0A1A7ZE78   A0A060W6S4  

KEGG

101745429    no KO assigned | (RefSeq) tRNA (cytidine(32)-2'-O)-methyltransferase non-catalytic subunit TRM732

GO

GO:0005739   GO:0016491   GO:0004129   GO:0005488   GO:0004298   GO:0005839   GO:0051603   GO:0051028   GO:0005622   GO:0006810   GO:0003824  

PANTHER

PTHR16557  

Length:

414

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00701999999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02569

outside

1  -  414

 

 

Pi

167.6713

Theta

163.553952

Tajima's D

-0.595743

CLR

10.573684

CSRT

0.218289085545723

Interpretation

Uncertain