Gene

KWMTBOMO10923

Pre Gene Modal

BGIBMGA008493

Annotation

putative_small_nuclear_ribonucleoprotein?_core_[Danaus_plexippus]

Location

Bomo_Chr18(+):7323223-7325630      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.048

CDS

ATGAGTAATGAAGGCAATAAAACGACTTCGGAAGCACCTCAGGTGGTGGAGGAAGAAGGAAAGGCAAAACTTAGAAAATGGTTAAATATGAAATTTAGAATTGAAATGACCGATGGCAGAGTTCTGATAGGAGTGTTCCTGTGTACAGATAGAGATGCAAATGTAATTTTAGGTGCTTGCTCAGAGTACTTGAAAAATAATGAGGGAGAAACTGAAGAACCCAGAGTATTAGGTCTAGTCATGGTTCCTGGAAGACACATTGTGTCAATACAAATTGATGATACAACACCATCTCAAACATACTATTATGATGAATATCTAATTAAATAA

Protein

MSNEGNKTTSEAPQVVEEEGKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLKNNEGETEEPRVLGLVMVPGRHIVSIQIDDTTPSQTYYYDEYLIK

Uniprot

H9JG46   A0A212FCB4   S4PMS9   A0A2H1WKP2   A0A2A4JS06   A0A194PHP6   + More
A0A194RRS0   A0A067RL84   R4UW31   A0A0C9S9Z9   A0A194ANC0   K7INW7   A0A232FLP9   U4UG11   N6SYY1   A0A210PXR8   A0A131YR78   A0A224YST4   A0A131XQZ5   A0A195EU77   F4W485   A0A158NFL2   A0A195E4R7   A0A195B3H4   A0A1B6LDJ9   A0A146LJY8   A0A0P4VQ73   A0A146LUS3   A0A0A9Y3E5   A0A151X1M5   A0A195CKE6   A0A026VVZ2   A0A087T6F7   A0A1E1WW84   A0A2R5LES3   A0A147BF49   A0A0T6B2R1   A0A1B6JYY9   A0A1S3I4G4   A0A224XNN6   D1ZZY7   A0A0P4VL70   R4G2Z0   A0A069DPA1   T1J0V0   A0A1B6M5T1   A0A0L7RII3   A0A2P6KL38   A0A0B6ZEJ4   A0A2A3ECX9   V9IC93   A0A088ARK8   B4MZZ5   A0A154P616   A0A0L8GUA9   T1FZF6   A0A1B6CL54   A0A1Y1LNE1   A0A0M9A7S8   A0A0P4XG69   A0A0N8BF97   A0A1Y1LNP4   A0A164Z295   A0A0P5FH00   A0A3B4CRS2   B4GSB4   Q29KG1   A0A2H8TLA3   A0A2S2NC48   A0A3S1BQ87   C4WXE2   A0A0K8UGC6   B4M9I3   A0A3B5QXW0   A0A3B5KTG5   A0A1S3DR92   A0A1L8DGG3   A0A1L8DG98   A0A2P2IA21   A0A2R7X890   A0A1W4UTH2   A0A2S2QJH9   A0A3B0JND8   T1HHZ1   B4Q8M7   Q8IPZ7   A0A1S3D5N1   B3NAM4   A0A3B5K1M6   V4BNL3   Q4V620   A0A3B1JU85   B0XE29   A0A3P8YUD7  

Pubmed

19121390    22118469    23622113    26354079    24845553    26131772    + More
20075255    28648823    23537049    28812685    26830274    28797301    28049606    21719571    21347285    26823975    25401762    24508170    30249741    28503490    29652888    18362917    19820115    27129103    26334808    17994087    23254933    28004739    15632085    23542700    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    21551351    25329095    25069045   

EMBL

BABH01001974    BABH01001975    AGBW02009208    OWR51358.1    GAIX01000016    JAA92544.1    + More
ODYU01008976    SOQ53024.1    NWSH01000789    PCG74190.1    KQ459604    KPI92568.1    KQ459765    KPJ20084.1    KK852559    KDR21370.1    KC571937    AGM32436.1    GBZX01002888    JAG89852.1    GELH01000550    GELH01000549    JAS03723.1    NNAY01000039    OXU31676.1    KB632308    ERL91962.1    APGK01051610    KB741197    ENN72979.1    NEDP02005415    OWF41264.1    GEDV01006798    JAP81759.1    GFPF01009490    MAA20636.1    GEFH01000081    JAP68500.1    KQ981979    KYN31457.1    GL887491    EGI71081.1    ADTU01001535    KQ979609    KYN20180.1    KQ976625    KYM79043.1    GEBQ01018206    JAT21771.1    GDHC01010216    JAQ08413.1    GDRN01108840    JAI57159.1    GDHC01008157    JAQ10472.1    GBHO01017996    GBHO01017994    GBRD01013963    GDHC01001078    JAG25608.1    JAG25610.1    JAG51863.1    JAQ17551.1    KQ982585    KYQ54311.1    KQ977642    KYN00927.1    KK107796    QOIP01000013    EZA47656.1    RLU15576.1    KK113646    KFM60696.1    GFAC01007903    JAT91285.1    GGLE01003895    MBY08021.1    GEGO01006011    JAR89393.1    LJIG01016057    KRT81743.1    GECU01003316    JAT04391.1    GFTR01002331    JAW14095.1    KQ971338    EFA02441.1    GDKW01003264    JAI53331.1    ACPB03011258    ACPB03011259    GAHY01002161    JAA75349.1    GBGD01003442    JAC85447.1    AFFK01020674    GEBQ01008709    JAT31268.1    KQ414584    KOC70639.1    MWRG01009489    PRD27048.1    HACG01019416    CEK66281.1    KZ288282    PBC29587.1    JR039434    AEY58700.1    CH963920    EDW77930.1    KQ434825    KZC07375.1    KQ420471    KOF80185.1    AMQM01001337    KB097495    ESN96169.1    GEDC01023146    JAS14152.1    GEZM01052525    GEZM01052524    JAV74461.1    KQ435726    KOX78216.1    GDIP01244791    JAI78610.1    GDIQ01183483    JAK68242.1    GEZM01052526    GEZM01052523    JAV74458.1    LRGB01000818    KZS15864.1    GDIQ01258245    JAJ93479.1    CH479189    EDW25661.1    CH379061    EAL33214.2    GFXV01003131    GFXV01003786    MBW14936.1    MBW15591.1    GGMR01001903    MBY14522.1    RQTK01000072    RUS88865.1    ABLF02029770    AK342591    BAH72562.1    GDHF01026691    JAI25623.1    CH940654    EDW57859.1    GFDF01008563    JAV05521.1    GFDF01008605    JAV05479.1    IACF01005279    LAB70865.1    KK858134    PTY27650.1    GGMS01008716    MBY77919.1    OUUW01000006    SPP82393.1    ACPB03018543    CM000361    CM002910    EDX03544.1    KMY87772.1    AE014134    BT044300    KX531912    AAN10396.1    ACH92365.1    AGB92508.1    ANY27722.1    CH954177    EDV57547.1    KB202408    ESO90454.1    BT022486    AAY54902.1    DS232799    EDS45801.1   

Proteomes

UP000005204    UP000007151    UP000218220    UP000053268    UP000053240    UP000027135    + More
UP000002358    UP000215335    UP000030742    UP000019118    UP000242188    UP000078541    UP000007755    UP000005205    UP000078492    UP000078540    UP000075809    UP000078542    UP000053097    UP000279307    UP000054359    UP000085678    UP000007266    UP000015103    UP000053825    UP000242457    UP000005203    UP000007798    UP000076502    UP000053454    UP000015101    UP000053105    UP000076858    UP000261440    UP000008744    UP000001819    UP000271974    UP000007819    UP000008792    UP000002852    UP000261380    UP000079169    UP000192221    UP000268350    UP000000304    UP000000803    UP000008711    UP000005226    UP000030746    UP000018467    UP000002320    UP000265140   

PRIDE

H9JG46    Q8IPZ7    Q4V620   

Pfam

PF01423   LSM

Interpro

IPR010920   LSM_dom_sf        + More
IPR034110   LSMD1       
IPR001163   LSM_dom_euk/arc       

SUPFAM

SSF50182   SSF50182       

CDD

cd06168  LSMD1

ProteinModelPortal

H9JG46   A0A212FCB4   S4PMS9   A0A2H1WKP2   A0A2A4JS06   A0A194PHP6   + More
A0A194RRS0   A0A067RL84   R4UW31   A0A0C9S9Z9   A0A194ANC0   K7INW7   A0A232FLP9   U4UG11   N6SYY1   A0A210PXR8   A0A131YR78   A0A224YST4   A0A131XQZ5   A0A195EU77   F4W485   A0A158NFL2   A0A195E4R7   A0A195B3H4   A0A1B6LDJ9   A0A146LJY8   A0A0P4VQ73   A0A146LUS3   A0A0A9Y3E5   A0A151X1M5   A0A195CKE6   A0A026VVZ2   A0A087T6F7   A0A1E1WW84   A0A2R5LES3   A0A147BF49   A0A0T6B2R1   A0A1B6JYY9   A0A1S3I4G4   A0A224XNN6   D1ZZY7   A0A0P4VL70   R4G2Z0   A0A069DPA1   T1J0V0   A0A1B6M5T1   A0A0L7RII3   A0A2P6KL38   A0A0B6ZEJ4   A0A2A3ECX9   V9IC93   A0A088ARK8   B4MZZ5   A0A154P616   A0A0L8GUA9   T1FZF6   A0A1B6CL54   A0A1Y1LNE1   A0A0M9A7S8   A0A0P4XG69   A0A0N8BF97   A0A1Y1LNP4   A0A164Z295   A0A0P5FH00   A0A3B4CRS2   B4GSB4   Q29KG1   A0A2H8TLA3   A0A2S2NC48   A0A3S1BQ87   C4WXE2   A0A0K8UGC6   B4M9I3   A0A3B5QXW0   A0A3B5KTG5   A0A1S3DR92   A0A1L8DGG3   A0A1L8DG98   A0A2P2IA21   A0A2R7X890   A0A1W4UTH2   A0A2S2QJH9   A0A3B0JND8   T1HHZ1   B4Q8M7   Q8IPZ7   A0A1S3D5N1   B3NAM4   A0A3B5K1M6   V4BNL3   Q4V620   A0A3B1JU85   B0XE29   A0A3P8YUD7  

PDB

3CW1     E-value=4.15747e-09,     Score=139

KEGG

101735332    K20824 N-alpha-acetyltransferase 38, NatC auxiliary subunit | (RefSeq) N-alpha-acetyltransferase 38,

GO

GO:0031417   GO:0016740  

PANTHER

PTHR10701:SF5   PTHR10701:SF11  

Length:

109

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01125

Exp number, first 60 AAs:

0.00944

Total prob of N-in:

0.49198

outside

1  -  109

 

 

Pi

171.829115

Theta

182.224901

Tajima's D

-0.885575

CLR

0.336348

CSRT

0.15949202539873

Interpretation

Uncertain