Silkworm Genome Informatics Database

Gene

KWMTBOMO10919

Annotation

PREDICTED:_uncharacterized_protein_LOC105392935_[Plutella_xylostella]

Location

Bomo_Chr18(-):7174373-7177453 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.558

CDS

ATGGCAAGACGACGATCAAAAAGCCAGTCCTTCGATGACGACGACAGTATTTTCGATCGACCAACGCGTGGTGGAATGTTTCACTTAACGGAGAATATCATCAGGATGTTTGACGGCAAAGACAAAACTTATGCTGTAACAAAGTGGATACAAGATATAGAGGAAAATGGTGACATATTCGAGTGGACACCAAAGCAACGGTTATTAGTGGCTCGACGGTCATTAACCGGCACGGCAGCTTTGTGGTTAAATTCTGAAAAAACGTTTCCATGCTGGGATACTTTAAAGATAGCCATCAGTAAGGAGTTCCCTGACACCATAGACGCCAAGACTATTCACGAAATGATGAGTGCTAAAAAGAAAAAGTCAAATGAATCATGCATTGACTACATGTTTGCCATGAAAGAGCTTGGACGCCGAGGCAAAATGGCGGACTACGTGGCTATAAAATATGTTGTAGATGGTATACAAGATCAAGAAATAAATAAAATAATGCTATATGGAGTCACAACGTACGCTGAATTAAAGGAGAAATTAAAAATATACGAGATTTTGAAAGAAAAAATGAAGAAAGAACCTATTCACGGAAAAGAGCAGAAAATTACTAATACAAGAGAATGGTCATCAAAAGTTCGATGTTATAGCTGTGGAGAAAAGAGTCATAAAAGTGAAGATTGTCCGAAAAAGATGCAAGGAAAAAAGTGTTTCAACTGCAACGTGTTCGGCCATATTTCTTCACAATGTCCGGCAAAGGCGGAAGCGTCATCGGCTACGGCTAGCAGCGCGAGAACGGAGCAGCAACCGAAACGCACATATATCGCTACGACGCAGGAGGGCGCGAACACAATTTTCGAAAATCAATCTAACGAAGTTCACAACGCTATGAATGCTGTGATTGGCTCTGCGAACAGTACGGTGCGCGACAAATGTCATAACAGTGAGGTTGACATTTTAAAAGTAAATAAAGAATGTAAAGTGTTGAAAAAAACTTTGAAATTAGTAAAATTGTGTAATAATAACGAAATTCATGCATTAATTGATACTGGTAGTGAAGTTAATTTAGTAACCATGGACTATTATGAGCAAATAGGCTCTCCGACGTGTTTTAAAAATGTAAACACAGTTCTTACCGGTTTAGGCTCATCAAAGGTAATATCAAGTGAACAATTTAAAACAAACATTGAAATCGACGGCTACACGTATCGTGATATAATATTTTATGTGATTCCTAGAGACAGTATACCTATTAAAGTGATATTGGGACATGAATTTTTAAGAAATGTTATTACAGTTATGAAAGATGGTTTGGTATGGATGAAACCAAATGATTGGTTGTTTAAGGTAAATTGTTTTCCATGTTCTATTGACATTGTAGGTCATGTTATGAATGAAAATGTGAGGAATGAAGTGACTAGGTTAGTAGATGAATATCGGCCATGTCAAACTAAAGAGGCTCCCATTGAGTTGAAAATCACACTTAAAGACGACATCCCAGTGGCTCAACGACCACGACGCATCTCACCAAAAGAACAGGATGAGGAGGATTACTCTGCAAGGGACCACAACATTGTTTGGTTGTACCACAGAAGATGGAAATTGAAATTATTAAGAGGGCGCATGATAATGGTCATTTTTCAAAGAAGAAAACAATGGAATTGA

Protein

MARRRSKSQSFDDDDSIFDRPTRGGMFHLTENIIRMFDGKDKTYAVTKWIQDIEENGDIFEWTPKQRLLVARRSLTGTAALWLNSEKTFPCWDTLKIAISKEFPDTIDAKTIHEMMSAKKKKSNESCIDYMFAMKELGRRGKMADYVAIKYVVDGIQDQEINKIMLYGVTTYAELKEKLKIYEILKEKMKKEPIHGKEQKITNTREWSSKVRCYSCGEKSHKSEDCPKKMQGKKCFNCNVFGHISSQCPAKAEASSATASSARTEQQPKRTYIATTQEGANTIFENQSNEVHNAMNAVIGSANSTVRDKCHNSEVDILKVNKECKVLKKTLKLVKLCNNNEIHALIDTGSEVNLVTMDYYEQIGSPTCFKNVNTVLTGLGSSKVISSEQFKTNIEIDGYTYRDIIFYVIPRDSIPIKVILGHEFLRNVITVMKDGLVWMKPNDWLFKVNCFPCSIDIVGHVMNENVRNEVTRLVDEYRPCQTKEAPIELKITLKDDIPVAQRPRRISPKEQDEEDYSARDHNIVWLYHRRWKLKLLRGRMIMVIFQRRKQWN

Uniprot

A0A2A4JH77 A0A2H1VAI8 A0A023EYH9 A0A023EZG2 A0A0J7K9X8 A0A023EY26 + More
A0A0K8URI1 A0A0J7KQL1 J9JQ65 A0A232EEC1 A0A069DWV3 A0A224XHR1 A0A2M4AEU2 A0A0K8U2D9 W8B0V9 A0A0A1XFE9 A0A0J7NF11

Pubmed

25474469 28648823 26334808 24495485 25830018

EMBL

NWSH01001586 PCG70783.1 ODYU01001505 SOQ37806.1 GBBI01004550 JAC14162.1 + More
GBBI01004551 JAC14161.1 LBMM01010976 KMQ87102.1 GBBI01004477 JAC14235.1 GDHF01023027 JAI29287.1 LBMM01004258 KMQ92652.1 ABLF02005846 NNAY01005459 OXU16662.1 GBGD01000341 JAC88548.1 GFTR01008753 JAW07673.1 GGFK01005990 MBW39311.1 GDHF01031400 JAI20914.1 GAMC01015907 JAB90648.1 GBXI01004632 JAD09660.1 LBMM01005919 KMQ91095.1

Proteomes

UP000218220 UP000036403 UP000007819 UP000215335

Pfam

PF00098   zf-CCHC        + More
PF17921   Integrase_H2C2
PF00665   rve
PF17917   RT_RNaseH
PF00078   RVT_1
PF17919   RT_RNaseH_2
PF02037   SAP
PF03732   Retrotrans_gag

Interpro

IPR021109   Peptidase_aspartic_dom_sf        + More
IPR036875   Znf_CCHC_sf
IPR001878   Znf_CCHC
IPR001969   Aspartic_peptidase_AS
IPR001995   Peptidase_A2_cat
IPR012337   RNaseH-like_sf
IPR001584   Integrase_cat-core
IPR041373   RT_RNaseH
IPR000477   RT_dom
IPR041588   Integrase_H2C2
IPR036397   RNaseH_sf
IPR036361   SAP_dom_sf
IPR041577   RT_RNaseH_2
IPR003034   SAP_dom
IPR005162   Retrotrans_gag_dom

SUPFAM

SSF50630   SSF50630        + More
SSF57756   SSF57756
SSF53098   SSF53098
SSF68906   SSF68906

Gene 3D

2.40.70.10 3.30.420.10 1.10.720.30

ProteinModelPortal

A0A2A4JH77 A0A2H1VAI8 A0A023EYH9 A0A023EZG2 A0A0J7K9X8 A0A023EY26 + More
A0A0K8URI1 A0A0J7KQL1 J9JQ65 A0A232EEC1 A0A069DWV3 A0A224XHR1 A0A2M4AEU2 A0A0K8U2D9 W8B0V9 A0A0A1XFE9 A0A0J7NF11

PDB

2CQF E-value=0.00117484, Score=101

KEGG

105842320 no KO assigned | (RefSeq) uncharacterized LOC105842320

GO

GO:0003676 GO:0008270 GO:0004190 GO:0015074 GO:0019773 GO:0004298 GO:0005839 GO:0051603 GO:0051028 GO:0005622 GO:0006810 GO:0003824

Length:

552

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0055

Exp number, first 60 AAs:

0.00013

Total prob of N-in:

0.01962

outside

1 - 552

Pi

231.311252

Theta

150.823258

Tajima's D

-0.553221

CLR

129.528336

CSRT

0.230388480575971

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree