Silkworm Genome Informatics Database

Gene

KWMTBOMO10906

Pre Gene Modal

BGIBMGA008482

Annotation

H2.0-like_homeobox_protein_[Papilio_xuthus]

Location

Bomo_Chr18(+):6349641-6354567 View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear Reliability : 4.707

CDS

ATGACTTCTTTAAATAGTGATGTAAACACAAATAAACTGAAGTTTAGTGTAGATAGTATATTGGGGAACAACGAGAAATCGAATTCGAATTCGTCTGCAGAATTGCAGAGACAGCAAGAGCCTCCGTGCGCGGGTTGTGTGGCCGCGCTGTATCGCTGCTGTAGGGATGAACCACCCTTATTGCAGTTGCCTTTGCCTATTCCATACACGCATTTGCACCCTGCTTTGAGACCGACTACAGTGTATCGTCTTCCTATTCCCTCATCATCACCACCTCAAATAACGCCTCGCTGTGATGTTACATCGAGCGGTAAACGGAAGAGATCCTGGTCACGTGCCGTGTTCAGCAACCTTCAACGAAAGGGCCTCGAGAGAAGGTTCCAAATACAGAAGTATATTACTAAGCCAGATCGACGGCAATTGGCGGCTACTTTAGGATTAACAGATGCACAGGTCAAAGTATGGTTTCAAAACCGACGCATGAAGTGGCGTCACACGAAGGAAGGGCGCGGAGGTATATCCACCGCAACAGGCATTCCAGGAAGAGATCCAGACTCCACAAACGATGACAACGAAGAGGTCGATGTTGATACTCTTAGTGATTAA

Protein

MTSLNSDVNTNKLKFSVDSILGNNEKSNSNSSAELQRQQEPPCAGCVAALYRCCRDEPPLLQLPLPIPYTHLHPALRPTTVYRLPIPSSSPPQITPRCDVTSSGKRKRSWSRAVFSNLQRKGLERRFQIQKYITKPDRRQLAATLGLTDAQVKVWFQNRRMKWRHTKEGRGGISTATGIPGRDPDSTNDDNEEVDVDTLSD

Uniprot

H9JG35 A0A2H1WPI2 A0A2W1BRE5 A0A194PIP5 A0A194QLV6 A0A3S2LUZ0 + More
A0A1W4W734 A0A146LEU8 A0A139WJJ3 A0A067RSB5 E2AL61 A0A026W781 E2BSX0 F4WQZ2 A0A3L8E5B3 A0A1J1I9G0 A0A158NIT9

Pubmed

19121390 28756777 26354079 26823975 18362917 19820115 + More
24845553 20798317 24508170 21719571 30249741 21347285

EMBL

BABH01001880 ODYU01010109 SOQ54979.1 KZ149999 PZC75340.1 KQ459604 + More
KPI92584.1 KQ461196 KPJ06538.1 RSAL01000195 RVE44569.1 GDHC01012520 JAQ06109.1 KQ971338 KYB28140.1 KK852450 KDR23700.1 GL440492 EFN65816.1 KK107432 EZA50884.1 GL450306 EFN81218.1 GL888276 EGI63381.1 QOIP01000001 RLU27088.1 CVRI01000045 CRK96919.1 ADTU01017148 ADTU01017149

Proteomes

UP000005204 UP000053268 UP000053240 UP000283053 UP000192223 UP000007266 + More
UP000027135 UP000000311 UP000053097 UP000008237 UP000007755 UP000279307 UP000183832 UP000005205

PRIDE

H9JG35

Pfam

PF00046 Homeodomain + More
PF00149 Metallophos

Interpro

IPR009057   Homeobox-like_sf        + More
IPR000047   HTH_motif
IPR020479   Homeobox_metazoa
IPR001356   Homeobox_dom
IPR017970   Homeobox_CS
IPR008139   SaposinB_dom
IPR004843   Calcineurin-like_PHP_ApaH
IPR041805   ASMase/PPN1_MPP
IPR011001   Saposin-like

SUPFAM

SSF46689 SSF46689 + More
SSF47862 SSF47862

CDD

cd00086 homeodomain
cd00842 MPP_ASMase

ProteinModelPortal

H9JG35 A0A2H1WPI2 A0A2W1BRE5 A0A194PIP5 A0A194QLV6 A0A3S2LUZ0 + More
A0A1W4W734 A0A146LEU8 A0A139WJJ3 A0A067RSB5 E2AL61 A0A026W781 E2BSX0 F4WQZ2 A0A3L8E5B3 A0A1J1I9G0 A0A158NIT9

PDB

2DMT E-value=6.73644e-13, Score=175

KEGG

101744413 K09339 homeobox protein HLX1 | (RefSeq) homeobox protein DBX1-B

GO

GO:0005634 GO:0006355 GO:0043565 GO:0003677 GO:0016021 GO:0005764 GO:0008081 GO:0046513 GO:0006685 GO:0004767 GO:0005615 GO:0061750 GO:0006412 GO:0043015 GO:0005515 GO:0051028 GO:0005622 GO:0006810 GO:0003824

Subcellular location

Nucleus

Length:

201

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00406

Exp number, first 60 AAs:

2e-05

Total prob of N-in:

0.13056

outside

1 - 201

Pi

157.874998

Theta

172.412717

Tajima's D

-0.49082

CLR

13.614234

CSRT

0.24178791060447

Interpretation

Possibly Positive selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics