Gene

KWMTBOMO10898  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008477

Annotation

PREDICTED:_39S_ribosomal_protein_L17?_mitochondrial_[Amyelois_transitella]

Location

Bomo_Chr18(+):6253241-6254542      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.645 Nuclear   Reliability : 2.216

CDS

ATGAATCAAGCAGAAGTTTCCAAACTTGTTTCAAAACTACGTATGAATATTAAACCAGAACACCGTCGGTTAAAAAATCTTAAAGGTCCTGAGGGCAGGATTGATAAATTACGTAAAACAGTAACAGGATTAATAAAATTCGAGAGAATAGAATTAAATATTAACCGAGGTGATGAAGCTCGCCAATATGCAGAAAGGCTTATATCAGAAGCTATCCGTCATGGTGACTGTCACAAACCAACTATGGACATGGCCAATTTTTGGCTTCTTGAAAAACAGCTTGTTCATAAATTATTCAAAGTTTTGGTTCCAAGATTTGAAAACTCGACAGTTTCTTATACAAAAATGATTAAAGCACCTAAAGCTCAGAATACTGAACATACAAATAAAATTGTATTAGAACTGCGAGGTAATCCATATCCAGACTTAATTGTCAAACAACCAAATAATAGATTATGGATTCAAAATGTATTGCTCGATGCTGCAAAATATGATTATAGGCAATCAAAAATTTCCGAAATTGCCGCAAATATTGGTAAAGATACCCAATTAAGTTCATCAAGTTTAACAGCAAATAATAAAGGGGGAACTCAAAAAGAAGAAAGTTGA

Protein

MNQAEVSKLVSKLRMNIKPEHRRLKNLKGPEGRIDKLRKTVTGLIKFERIELNINRGDEARQYAERLISEAIRHGDCHKPTMDMANFWLLEKQLVHKLFKVLVPRFENSTVSYTKMIKAPKAQNTEHTNKIVLELRGNPYPDLIVKQPNNRLWIQNVLLDAAKYDYRQSKISEIAANIGKDTQLSSSSLTANNKGGTQKEES

Uniprot

H9JG30   A0A2A4J6K7   A0A2W1BKC9   A0A2H1WRK8   A0A0L7LAD7   A0A0L7KP04   + More
A0A194PH17   A0A194QNJ5   A0A212EMZ0   A0A3S2LUB1   A0A182M8M3   A0A182R1G4   A0A182N4X4   A0A182R141   A0A182XBP2   A0A1I8JV86   A0A182TFI0   Q7PYC1   A0A182K4S9   A0A182PKD5   A0A182S8U2   A0A182J564   A0A182I0H9   A0A182VQV5   A0A1Q3FD95   B0WQN7   A0A182YJW8   W5JRE1   A0A1B6D5W7   A0A023F811   A0A023EJC2   A0A069DWW4   A0A182GHL3   A0A182HE30   A0A0P4VPT3   R4G3U1   A0A0V0GEB5   Q17FI8   U5EUU2   A0A1L8DRK9   A0A1I8NI15   B3M8X9   A0A0A1XAR2   A0A2M3ZHW0   A0A1B0FV29   A0A2M4BZT0   A0A1I8PTG7   A0A2M4AQX7   A0A2M4AQI0   A0A2M4AQN3   A0A0K8TRL5   A0A1B0GGB8   A0A182F6Y3   A0A1A9XD28   A0A1B0AUA8   A0A0K8VRY8   A0A1A9VZ02   A0A084VRT4   B4MN90   A0A034WN48   A0A1Y1NH77   A0A0L0C3H4   T1DN23   A0A1B0AKA5   U4TZP2   J3JUS1   W8BPU6   A0A067QLG1   A0A2J7PGD1   A0A0M4EC70   A0A1W4X1H3   A0A2J7PGC6   B4HVD9   B4QEY2   A0A1S3DVP7   B3NEN0   A0A1A9X5S0   B4IYK3   B4KXY2   B5DQY1   B4H5E5   A2I450   A0A0Q9W9H8   B4PC42   Q9W0S6   B4MGR0   A0A336KYN3   C4WS93   A0A1W4VP07   A0A2H8TJU8   A0A2S2QVN2   A0A3B0KM70   A0A0J7L175   A0A154P3D4   A0A1B6JDH7   A0A0T6B603   E1ZXK7   A0A1B6GM05   Q56FB9   A0A2P8Y1F4  

Pubmed

19121390    28756777    26227816    26354079    22118469    12364791    + More
14747013    17210077    25244985    20920257    23761445    25474469    24945155    26334808    26483478    27129103    17510324    25315136    17994087    25830018    26369729    24438588    25348373    28004739    26108605    23537049    22516182    24495485    24845553    22936249    15632085    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20798317    29403074   

EMBL

BABH01001872    NWSH01002670    PCG67715.1    KZ149999    PZC75348.1    ODYU01010526    + More
SOQ55693.1    JTDY01001996    KOB72370.1    JTDY01007964    KOB64835.1    KQ459604    KPI92592.1    KQ461196    KPJ06545.1    AGBW02013764    OWR42860.1    RSAL01000195    RVE44564.1    AXCM01005286    AXCN02000187    AAAB01008987    EAA01755.3    APCN01002078    GFDL01009499    JAV25546.1    DS232042    EDS32952.1    ADMH02000642    ETN65475.1    GEDC01016333    JAS20965.1    GBBI01001310    JAC17402.1    GAPW01004674    JAC08924.1    GBGD01003065    JAC85824.1    JXUM01011709    KQ560336    KXJ82985.1    JXUM01005697    KQ560200    KXJ83878.1    GDKW01002198    JAI54397.1    ACPB03017964    ACPB03017965    GAHY01001925    JAA75585.1    GECL01000482    JAP05642.1    CH477270    EAT45356.1    GANO01003724    JAB56147.1    GFDF01004991    JAV09093.1    CH902618    EDV38923.1    GBXI01006080    JAD08212.1    GGFM01007396    MBW28147.1    AJWK01010299    GGFJ01009412    MBW58553.1    GGFK01009801    MBW43122.1    GGFK01009726    MBW43047.1    GGFK01009784    MBW43105.1    GDAI01000594    JAI17009.1    CCAG010012455    JXJN01003582    GDHF01010994    JAI41320.1    ATLV01015778    KE525036    KFB40678.1    CH963847    EDW73646.1    GAKP01003210    JAC55742.1    GEZM01002447    JAV97252.1    JRES01000951    KNC26870.1    GAMD01003240    JAA98350.1    KB631806    ERL86297.1    BT126986    AEE61948.1    GAMC01003280    JAC03276.1    KK853289    KDR08904.1    NEVH01025635    PNF15384.1    CP012525    ALC42971.1    PNF15385.1    CH480817    EDW49904.1    CM000362    CM002912    EDX07009.1    KMY96615.1    CH954178    EDV50025.1    CH916366    EDV95513.1    CH933809    EDW17654.1    CH379070    EDY73968.1    CH479211    EDW32997.1    EF070553    ABM55619.1    CH940682    KRF77615.1    CM000159    EDW92697.1    AE014296    AY119639    BT029976    BT120114    AAF47367.2    AAM50293.1    ABM92850.1    ADB25330.1    AGB93891.1    EDW57126.1    UFQS01001248    UFQT01001248    SSX09914.1    SSX29637.1    ABLF02028286    AK340098    BAH70763.1    GFXV01002446    MBW14251.1    GGMS01012592    MBY81795.1    OUUW01000012    SPP86926.1    LBMM01001484    KMQ96234.1    KQ434809    KZC06449.1    GECU01010528    JAS97178.1    LJIG01009600    KRT82755.1    GL435066    EFN74090.1    GECZ01006315    JAS63454.1    AY961581    AAX62483.1    PYGN01001050    PSN38076.1   

Proteomes

UP000005204    UP000218220    UP000037510    UP000053268    UP000053240    UP000007151    + More
UP000283053    UP000075883    UP000075900    UP000075884    UP000075886    UP000076407    UP000075903    UP000075902    UP000007062    UP000075881    UP000075885    UP000075901    UP000075880    UP000075840    UP000075920    UP000002320    UP000076408    UP000000673    UP000069940    UP000249989    UP000015103    UP000008820    UP000095301    UP000007801    UP000092461    UP000095300    UP000092444    UP000069272    UP000092443    UP000092460    UP000078200    UP000030765    UP000007798    UP000037069    UP000092445    UP000030742    UP000027135    UP000235965    UP000092553    UP000192223    UP000001292    UP000000304    UP000079169    UP000008711    UP000091820    UP000001070    UP000009192    UP000001819    UP000008744    UP000008792    UP000002282    UP000000803    UP000007819    UP000192221    UP000268350    UP000036403    UP000076502    UP000000311    UP000245037   

PRIDE

H9JG30    Q9W0S6   

Pfam

PF01196   Ribosomal_L17

Interpro

IPR036373   Ribosomal_L17_sf        + More
IPR000456   Ribosomal_L17       

SUPFAM

SSF64263   SSF64263       

Gene 3D

3.90.1030.10    

ProteinModelPortal

H9JG30   A0A2A4J6K7   A0A2W1BKC9   A0A2H1WRK8   A0A0L7LAD7   A0A0L7KP04   + More
A0A194PH17   A0A194QNJ5   A0A212EMZ0   A0A3S2LUB1   A0A182M8M3   A0A182R1G4   A0A182N4X4   A0A182R141   A0A182XBP2   A0A1I8JV86   A0A182TFI0   Q7PYC1   A0A182K4S9   A0A182PKD5   A0A182S8U2   A0A182J564   A0A182I0H9   A0A182VQV5   A0A1Q3FD95   B0WQN7   A0A182YJW8   W5JRE1   A0A1B6D5W7   A0A023F811   A0A023EJC2   A0A069DWW4   A0A182GHL3   A0A182HE30   A0A0P4VPT3   R4G3U1   A0A0V0GEB5   Q17FI8   U5EUU2   A0A1L8DRK9   A0A1I8NI15   B3M8X9   A0A0A1XAR2   A0A2M3ZHW0   A0A1B0FV29   A0A2M4BZT0   A0A1I8PTG7   A0A2M4AQX7   A0A2M4AQI0   A0A2M4AQN3   A0A0K8TRL5   A0A1B0GGB8   A0A182F6Y3   A0A1A9XD28   A0A1B0AUA8   A0A0K8VRY8   A0A1A9VZ02   A0A084VRT4   B4MN90   A0A034WN48   A0A1Y1NH77   A0A0L0C3H4   T1DN23   A0A1B0AKA5   U4TZP2   J3JUS1   W8BPU6   A0A067QLG1   A0A2J7PGD1   A0A0M4EC70   A0A1W4X1H3   A0A2J7PGC6   B4HVD9   B4QEY2   A0A1S3DVP7   B3NEN0   A0A1A9X5S0   B4IYK3   B4KXY2   B5DQY1   B4H5E5   A2I450   A0A0Q9W9H8   B4PC42   Q9W0S6   B4MGR0   A0A336KYN3   C4WS93   A0A1W4VP07   A0A2H8TJU8   A0A2S2QVN2   A0A3B0KM70   A0A0J7L175   A0A154P3D4   A0A1B6JDH7   A0A0T6B603   E1ZXK7   A0A1B6GM05   Q56FB9   A0A2P8Y1F4  

PDB

6NU3     E-value=3.51004e-23,     Score=264

KEGG

101744946    K02879 large subunit ribosomal protein L17 | (RefSeq) 39S ribosomal protein L17, mitochondrial

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0006412   GO:0003735   GO:0005840   GO:0005762   GO:0032543   GO:0005622   GO:0043015   GO:0005515   GO:0051028   GO:0006810   GO:0003824  

PANTHER

PTHR14413  

Length:

202

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.10603

outside

1  -  202

 

 

Pi

273.189029

Theta

202.724586

Tajima's D

1.071043

CLR

0

CSRT

0.682865856707165

Interpretation

Possibly Positive selection