Silkworm Genome Informatics Database

Gene

KWMTBOMO10897

Annotation

PREDICTED:_gamma-tubulin_complex_component_6_[Amyelois_transitella]

Location

Bomo_Chr18(-):6232041-6249780 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.042

CDS

ATGGCTTATTCGGATAATGATGGGGTATATGGTCTCCTTACAAATTTGTGCAGTAGAACCGCTTCGAAGTACTACACTCACAGTAGAATTTCACAGAAAATACTATACACGAAAATGAGATCTCACGCTTATGAAATAATATTGAAAAAATCAACCAAGGAGTATCCAACGAAAAAGCTTAACCCAATGATTGGCTTACTTTCTCAACTCTTCATTTATCAGCAAAGTACTAGAAACATCACAGAGTATAAACGAGTTGCAGAACTTAGTAAAGTTATTCAAGAATTGAAGTCCACTGATTTTGGTGACTGTGAAGATGATGTTCATAATGTGCTAAGGTTTTTAATTTCGCTTAGCGACTGTACCCAAGAGGATCAATCAACTGTAATGTATCATAAACCATTTTCATTTGGATTGTTAGATGAAATGTTACCAAAGCCTTGTCGTCAACCATTTAGCTCAACCCAACCGTACGCATACTATCCGTCACATGTGTTTCAGCTGCCATTCTCCTTGAAACATCAAGGATCAAATCTGGATAGTCAGAAATCACAAAATTGTACAGAGTATACTGTAGAAAGTTTTGACTCTGGATCATTGCTTTTAGATTCTACACAACGATCTCACAAAAGAAAAGATTCAGACTTAAAGACATTCCTTAGTCCAATGTCTTTAGCTTCTATGACATCAACTCATATGTCCCCATACTCTGAAAATAACATATTTAATTTACCAAGATTGAGGACACCAAGGGATTTAACAATACCATCTTCTGAACATGCTGATGTAAAGATATCATTGGCAAGTAACAGCACGAAAGACGATCTCAAAGAGATGTTCAGAGCTCAGGTAAACGATGAGACTGTTGATGTATGGGAACTTGCATCTCAAATTGATAAACATATACCTGATTCCATTTGGGATATTGTATCAAAATTACCACCTATAACTGAGAGACAATTAATAGCATCTTCTAAGCGAGAAATAGGACTATGGCATCAAACATACTGTGGAATGATGTCTGATCTCGATATTATAACAGAGAAACAGTTCATTAGACACATCATGTATTTAATCATTGGCATCGAAACGACTTCCTTTCCATTTAGCGAGGAGTCAAATTGTTTTTATATGAAGCACAATCTTGTGTTAGAAGGGATATCAAAGGAACATATCAAGAGATATGTCTCAGATTTAATATTAGTCGGAACTTATTACAGGAGGTTGTATAAATTCGCATTTAATCAAACGCTTGGAGATCATTTTCACAGTAAAGGATTGGTTTACGAGGCAGCCAGGGAAGTCATAAGGCGATATTTATTAGAATTCAGATTGATCGCCACGCAAATCTACGAAGACTGTCAGAAGTGTGGCTCCGAAGACATAAATTGTATGCCGACATTACTGCAAATCTCATATCACATTGAACCGTTGAAATACGAAATAGAAACCATTGTTTCTATATACAAACTCATTGATTCAGATCCCAAGGCCACATTACCTCACGGAGCAGAACTAATGTCTTATTTGTTCAACGAAATATCGCTGGTGACCCACAAGAAAACTGCAACGAGAATGTTTTATTCGCTGTTCGCGATATGCAAAGTTTACTTCAAATTCATAGAGAAATTCATATTTGAAGGCGAATTAGACGACAGGCATACTGAATTCTTCATACGAAAAGACTCTCAGTACGTCAATTGTCAGTCAAAGAGGTATTGGGATAAAGGTTTTCATATAACGCAAAGTATAGCCGTGCCGGAATTCCTGAGGCCCCTGGCAAAGTTTATATTGCTGTGCGGAAAATCTCTGAGACTATTGAAATTGTGCAATCCTAATGATCCACTGATACTGTTAATATCGTCAGATCACCCCACAGTTAGAACTTGCGCGAACTTCGAAGAACTAGAACGCCAACAGCAAATGTTGGACGTTTACCGCACTAGGTGTCTGTTCGTATGCGGAGACCCGGTTACCTTCGAACAGATCATGCTAAAGAGAGACGCTGAAAGGAAAGCGTTTACCGAGATGGCTTCTCTGAAACAAGCCGAAACCATGGAGAAAATCGTTGCTGAACGAAAACGTCTAGCACAGTTGATAGTAGCAGAAAAGCAGCATTCCCTCCGAGTGCTCGAGGCAGCTATGGCTGAAGCGAAAGCTGCTAAAAGAAAAGCCCAACGCCCGGAAAAAGTACTCAGTGAATTAGAAGTAGCAGCAGATAAAGCTGCCGAAGAGGTAGATTCTAAACTTAGAGATGATGAAAGGGACAAAATAATGGAGTATTATTCGAAATTGAATATGGAGGTTGAAAAAAGTAAAATGCACACCGAATGGAAAATCAAACGTTTGCAATTAGATCAAAGCAGAATGCAGCTGCTCTCTACCGAAGAGAGAAATTTAAAACGAGAAAAATTAGAGTTGGAGCATCAGAAGAACGAAGAAATCATGGCTATGTCAATACAGAGCTTCGACCCTAAATCCGAAGACGAGATAGAAAGTAAAGTTGATGATAAGAATGTCGAAGATAAAATGTCTATATCCACCAATTCAGTGACTATGCTAGAAATCGATGAAAGTCCTCAACCAACTGAATTCACTCAGAATAAAATGAAATCTCAAACGTCTAGTGATGTATTCAACGCTATTTGTAACGTCGCAAAGAGCTTTTTCGGTGTCACGAAACGGGAAGATAGCAAAAATGATGATAACACAAAGGAGTTAGATTCCCAAGGCAATGTTGTTTCCGAAATTAATTCAAACAATGCAAGGAAACATCAGTACGATGAAAATCAATTGGCCGAAAATAATTTGCAGTACATAAAGTCACGGCGGGAAGCCTTTTTGAACAAACAGAAAGTTATGGCTCACGAATTCGGCCAAACGGATAACGAGAATAATCAATTGAATGATCCGCCACTGATCAATGTCATTACTGTGGACGAAGAAAATAATATACAAGATGATTCGCGCGCTTTCGTTGAAGCGAAACGTAATAAATTAAAAGTTCTTGGAACCGAATTCGGAATGAAGCCAGATGAGAAAGTTATTAATACAGGACCAAGAACGGACGCTCAAAGGGAAGCCCTGATAAACAAGCAGAAAGTGTTAGGCGTTGAATATAATTTGCCGGCCGAAGTATTTCACAAACGCGAACCAGCAAACGTAGCTCAAGAGGAGGCCCTGCGTAACAGAACTAAAGTGCTGACATCGGACCAGGAAGCGAACAAACCGATCAGTCCAAAACGCGAAGCCACCAAACGATCCGGCCTCACATTGAATTTGAAACCTTACATTGAAACTGTTAAAGTTCAGAACGTTTCTACACCTAATCTAGGATCTATAACTCCCGGAGATCTATTTCCTCGTCTTGATTTAGAAACACCGACCACAGCGGACATACCGCCAGAAGGGCCTATGACTGGCGACGTTTTCACACCCCGAAGTGACGGAAAAGACCTAGAAACTACTGGAATAAAATGCAAAGTTGATAAAGAATTTATCACTTCAGAAGGGTTTAACTTCCCAGTTCTAGATGACGAGTCTGTTGGGCCGGAGAATACTAGCGATGGACAAACTGAGGAATTTGTGGAAACCTCTCCGACTAAAGGCACGGATATCGAAGTCGAAAGTATCAAAAACAAATATTCATTTTTCAACATACTCGATGGTTCCTATGATCTCGATGATTTTGATCCTTTTGGTGTGAAAGAGTTAACGAAATATTCAAAAGATCCTTTCACTAGTAAAATGGATTTAGAAATGAAAAGCTCAAGCTACACCCACCCTGCTCTTATAATGGAGGAAGTAAAAAAGAAACCATATTCGAACATATTTTTGACCCGCTCCGATGCCAAACATAATGACGCCAGTAACATATCATGTGATAACATTGCAACACTGACAGCGTGCTTGCAACGTTCCGTAATGTTGCCACTAACGTACCAGCTAGAAGTCGTTAATAATTCTATTTTGACGTACTTCTTGGTCAATCTGGACATATACGAGCATTTGAGGAGTTTGAAGGATTACTTCTTTCTGATGGACGGTGAATTTTCTCGGAGCATATGTCACAATCTGTTTAGTAAATTATCGAAGACGTTAAATCCCCAGGAGCTTTTGAATTTTGCCACGTTACACAATATCCTGGATAAGGCACTCGGTTCGTCTATATCTCATATTCATAAATTCTCGGAGAATGTTTCGTTTACAATAACCGAATCTCCTCTAAGTTTCCAACACAGCTCCCCCGATGTACTGCAATGCTTGTCCTTGACGTATACGGTCACGTGGCCGCTGAACATTATCCTGTCCCAAGAGGCATTGCTGCGCTACGCCAAAGTATTCCAGTTTCTGGTCAAAATGAGGAGGATATCCTGGGTGCTCGGAGAAGATTTTGAGAATCTGAAATTGGCCGTGAAACTTTCGCGGGAGCACTCCCGGAGGCTGTTGCGTTCGCCTCACTACATCTCTATACAAATTTACCGGCACATAATGGCGTCCATGGTCCGCGCGCTCGACAACTACATCGTGGCGACGTGCATCTTGTCCTCGTGGACCGAATTCGAGAATGATTTGAAGAAAGCGAGAACTCTAGACGACCTATACGAATGTCATGTCGTTTACATAAAAAAAGTTTTGTTCAGATGTCTGCTGAACAACAGGTCGACGCCCGTAATGAAGTTGTTGAACGACATGTTTACGGTGATCCTGAAGTTTAGCAGAGTATTGAAGGCGGGGGAATGGCAGGAGAACAATTCGAACGCATATTTCACACACTCAAGTTTTGTACAGCTCGAAGAATTGTTCCATTTGTTCGAGAAACTAGCGAAATATCTTCACAAAGTGGTCACCAAGTTAATGGAGTGCGGGTATCAAAGGCATCTCGTGGAACTACTCATTATGACCAACCTGAACGGATATTACAACTCTGATAAGCCCAATAACACGACAGTTCAGTCCGCGTAG

Protein

MAYSDNDGVYGLLTNLCSRTASKYYTHSRISQKILYTKMRSHAYEIILKKSTKEYPTKKLNPMIGLLSQLFIYQQSTRNITEYKRVAELSKVIQELKSTDFGDCEDDVHNVLRFLISLSDCTQEDQSTVMYHKPFSFGLLDEMLPKPCRQPFSSTQPYAYYPSHVFQLPFSLKHQGSNLDSQKSQNCTEYTVESFDSGSLLLDSTQRSHKRKDSDLKTFLSPMSLASMTSTHMSPYSENNIFNLPRLRTPRDLTIPSSEHADVKISLASNSTKDDLKEMFRAQVNDETVDVWELASQIDKHIPDSIWDIVSKLPPITERQLIASSKREIGLWHQTYCGMMSDLDIITEKQFIRHIMYLIIGIETTSFPFSEESNCFYMKHNLVLEGISKEHIKRYVSDLILVGTYYRRLYKFAFNQTLGDHFHSKGLVYEAAREVIRRYLLEFRLIATQIYEDCQKCGSEDINCMPTLLQISYHIEPLKYEIETIVSIYKLIDSDPKATLPHGAELMSYLFNEISLVTHKKTATRMFYSLFAICKVYFKFIEKFIFEGELDDRHTEFFIRKDSQYVNCQSKRYWDKGFHITQSIAVPEFLRPLAKFILLCGKSLRLLKLCNPNDPLILLISSDHPTVRTCANFEELERQQQMLDVYRTRCLFVCGDPVTFEQIMLKRDAERKAFTEMASLKQAETMEKIVAERKRLAQLIVAEKQHSLRVLEAAMAEAKAAKRKAQRPEKVLSELEVAADKAAEEVDSKLRDDERDKIMEYYSKLNMEVEKSKMHTEWKIKRLQLDQSRMQLLSTEERNLKREKLELEHQKNEEIMAMSIQSFDPKSEDEIESKVDDKNVEDKMSISTNSVTMLEIDESPQPTEFTQNKMKSQTSSDVFNAICNVAKSFFGVTKREDSKNDDNTKELDSQGNVVSEINSNNARKHQYDENQLAENNLQYIKSRREAFLNKQKVMAHEFGQTDNENNQLNDPPLINVITVDEENNIQDDSRAFVEAKRNKLKVLGTEFGMKPDEKVINTGPRTDAQREALINKQKVLGVEYNLPAEVFHKREPANVAQEEALRNRTKVLTSDQEANKPISPKREATKRSGLTLNLKPYIETVKVQNVSTPNLGSITPGDLFPRLDLETPTTADIPPEGPMTGDVFTPRSDGKDLETTGIKCKVDKEFITSEGFNFPVLDDESVGPENTSDGQTEEFVETSPTKGTDIEVESIKNKYSFFNILDGSYDLDDFDPFGVKELTKYSKDPFTSKMDLEMKSSSYTHPALIMEEVKKKPYSNIFLTRSDAKHNDASNISCDNIATLTACLQRSVMLPLTYQLEVVNNSILTYFLVNLDIYEHLRSLKDYFFLMDGEFSRSICHNLFSKLSKTLNPQELLNFATLHNILDKALGSSISHIHKFSENVSFTITESPLSFQHSSPDVLQCLSLTYTVTWPLNIILSQEALLRYAKVFQFLVKMRRISWVLGEDFENLKLAVKLSREHSRRLLRSPHYISIQIYRHIMASMVRALDNYIVATCILSSWTEFENDLKKARTLDDLYECHVVYIKKVLFRCLLNNRSTPVMKLLNDMFTVILKFSRVLKAGEWQENNSNAYFTHSSFVQLEELFHLFEKLAKYLHKVVTKLMECGYQRHLVELLIMTNLNGYYNSDKPNNTTVQSA

Uniprot

A0A2W1BJX5 A0A2A4J6H1 A0A1E1WU38 A0A194QSN2 A0A3S2TFF5 A0A212EN07 + More
A0A2H1W1H3 A0A194PHS0 A0A0L7LA47

Pubmed

28756777 26354079 22118469 26227816

EMBL

KZ149999 PZC75349.1 NWSH01002670 PCG67717.1 GDQN01000566 JAT90488.1 + More
KQ461196 KPJ06546.1 RSAL01000195 RVE44563.1 AGBW02013764 OWR42859.1 ODYU01005467 SOQ46354.1 KQ459604 KPI92593.1 JTDY01001996 KOB72368.1

Proteomes

UP000218220 UP000053240 UP000283053 UP000007151 UP000053268 UP000037510 + More

Pfam

PF17681 GCP_N_terminal + More
PF04130 GCP_C_terminal

Interpro

IPR041470   GCP_N        + More
IPR007259   GCP
IPR040457   GCP_C
IPR042241   GCP_C_sf

Gene 3D

1.20.120.1900

ProteinModelPortal

A0A2W1BJX5 A0A2A4J6H1 A0A1E1WU38 A0A194QSN2 A0A3S2TFF5 A0A212EN07 + More
A0A2H1W1H3 A0A194PHS0 A0A0L7LA47

PDB

3RIP E-value=4.75875e-05, Score=117

KEGG

105841961 no KO assigned | (RefSeq) uncharacterized LOC105841961

GO

GO:0043015 GO:0000922 GO:0005815 GO:0007020 GO:0000226 GO:0005515 GO:0051028 GO:0005622 GO:0006810 GO:0003824

PANTHER

PTHR19302

Length:

1654

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0512000000000001

Exp number, first 60 AAs:

0.00155

Total prob of N-in:

0.00086

outside

1 - 1654

Pi

209.034254

Theta

175.543154

Tajima's D

0.536257

CLR

0.067489

CSRT

0.532673366331683

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics