Silkworm Genome Informatics Database

Gene

KWMTBOMO10893

Pre Gene Modal

BGIBMGA008476

Annotation

PREDICTED:_helix-loop-helix_protein_1_[Papilio_machaon]

Location

Bomo_Chr18(+):6163461-6171371 View in EpiBrowser

Transcription factor

bHLH

Location in the cell

Nuclear Reliability : 2.839

CDS

ATGAAGAGCTGGTTAGAAACAGCGAGTACCATAGAAGATGGATCCATGTCTTGCATGCTAGCGGAGCCAAGAGAAGCTTTACTACCAATTACGGGAAGAGAAAACTTAGCACCCAGGAAAAGAGATAGAACACTAGAGCCGTGTTCCATATCGGAAGAAGCGTATCTTTCGAGCGGAGCTGGATCACCGTGTGCTGGTTTATCACGTGAAGAACGCAGACGACGACGCAGAGCCACCCTCAAATACCGCACAGCTCACGCCACCAGGGAAAGGATTCGAGTCGAAGCCTTCAATGCAGCGTTCGCATCACTTAGAAGACTACTGCCAACTTTACCGCCCGACAAGAAATTGTCCAAAATCGAAATACTGCGGTTAGCTATATGCTACATTGCATATTTGAATCATGTTTTAGATGCTTAA

Protein

MKSWLETASTIEDGSMSCMLAEPREALLPITGRENLAPRKRDRTLEPCSISEEAYLSSGAGSPCAGLSREERRRRRRATLKYRTAHATRERIRVEAFNAAFASLRRLLPTLPPDKKLSKIEILRLAICYIAYLNHVLDA

Uniprot

H9JG29 A0A2W1BM37 A0A194QMG7 A0A194PGT1 A0A2A4K895 A0A2H1X322 + More
A0A212EN01 A0A2Z5ULX1 A0A0L7L4P5 D2A1T6 A0A232F9Y8 A0A195EKT9 A0A158N9Y1 U4UD60 A0A182XQ88 A0A182UW96 A0A182LDX1 A0A182TX62 A0A182HQG9 Q7Q813 W4Y0K9 Q17CV1 A0A182GMG3

Pubmed

19121390 28756777 26354079 22118469 26227816 18362917 + More
19820115 28648823 21347285 23537049 20966253 12364791 14747013 17210077 17510324 26483478

EMBL

BABH01001863 KZ149999 PZC75351.1 KQ461196 KPJ06549.1 KQ459604 + More
KPI92596.1 NWSH01000044 PCG80289.1 ODYU01013065 SOQ59733.1 AGBW02013764 OWR42856.1 AP017483 BBB06737.1 JTDY01002944 KOB70442.1 KQ971338 EFA02090.2 NNAY01000660 OXU27127.1 KQ978739 KYN28756.1 ADTU01009904 KB632306 ERL91894.1 APCN01004604 AAAB01008948 EAA10421.4 AAGJ04029683 CH477304 EAT44170.1 JXUM01075590 KQ562895 KXJ74885.1

Proteomes

UP000005204 UP000053240 UP000053268 UP000218220 UP000007151 UP000037510 + More
UP000007266 UP000215335 UP000078492 UP000005205 UP000030742 UP000076407 UP000075903 UP000075882 UP000075902 UP000075840 UP000007062 UP000007110 UP000008820 UP000069940 UP000249989

PRIDE

H9JG29

Pfam

PF00010 HLH

Interpro

IPR036638   HLH_DNA-bd_sf        + More
IPR040238   TAL-like
IPR011598   bHLH_dom

SUPFAM

SSF47459 SSF47459

Gene 3D

4.10.280.10

CDD

cd00083 HLH

ProteinModelPortal

H9JG29 A0A2W1BM37 A0A194QMG7 A0A194PGT1 A0A2A4K895 A0A2H1X322 + More
A0A212EN01 A0A2Z5ULX1 A0A0L7L4P5 D2A1T6 A0A232F9Y8 A0A195EKT9 A0A158N9Y1 U4UD60 A0A182XQ88 A0A182UW96 A0A182LDX1 A0A182TX62 A0A182HQG9 Q7Q813 W4Y0K9 Q17CV1 A0A182GMG3

PDB

2YPB E-value=1.4917e-10, Score=152

KEGG

101743687 K09075 nescient helix-loop-helix protein | (RefSeq) helix-loop-helix protein 1

GO

GO:0046983 GO:0006357 GO:0000981 GO:0000977 GO:0005634 GO:0006508 GO:0043565 GO:0003676 GO:0005515 GO:0051028 GO:0005622 GO:0006810 GO:0003824

PANTHER

PTHR13864

Length:

139

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.37996

Exp number, first 60 AAs:

0.00095

Total prob of N-in:

0.22951

outside

1 - 139

Pi

39.071664

Theta

28.38305

Tajima's D

-1.871361

CLR

0.243674

CSRT

0.023598820058997

Interpretation

Possibly Positive selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics