Silkworm Genome Informatics Database

Gene

KWMTBOMO10877

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr18(+):5931828-5936689 View in EpiBrowser

Full name

Probable RNA-directed DNA polymerase from transposon BS

Alternative Name

Reverse transcriptase

Location in the cell

Nuclear Reliability : 2.125

CDS

ATGGAAGCTTTATTTTCAGAATTCCTCCGACTTCGCCACCCAAAGCTCACTTCTGAGTTTCTGGCTTTCAAGGCCGATCACGCCGTGAGCCCTCTCGCGGATTCCGCCGTGCTCGTCGCTCCCGCGTCGTACACCGCAGCGTCCGCCATACCTGCCGCTCCCGCGTCGCCTATACTAGTGGGTAAAACTGCTGCGTCGTCCGCCGTGGCCGCTGCTCCCCTGGCGCGATCATCCGCGGGTTCCGTAGGGTCCGACGGACGTCCTGCATCTGCCCGTAGGTCGCCTGCTCCCGAGCCTGCTGCCTTCTCGTCCTCCGACTCTGACTCAGACATGGAGGTCGACCTCGCCCCCGCCTCATCGACGGATGGATTCACCCTGGTACAAAAGGGTAAGAAGCGCGCTGCGGAGTCCCAAACTCCCGCGGCCGCTAAAATTATTAAAGCCGCGAACGCGTCGCGCCCTCGCCCTCCGACTCCCGTCGCTCCCCCTGCCCGTGCCACACCGTCGCCGCGTCCAGTGGCACAAAATAAAACTCAGACCCCTCCCCCGGTAATCCTTCAAGAGAAGGCAGCTTGGGACCGAGTTTCCCTGGCCCTTCAGGCCAAAAAAATTAATTTTATCAGCGCCCGTAACCTCGCGAACGGGATTCAAATTAAGTTAACGACACCCGATGACCATAGGGCCCTCTCAAGCTACCTCCGAAAGGAGCGTATAAGTTTCCACACTTATACGCTTCAGGAGGAGCGTGAACTTCGCGCGGTCATACGCGGCATCCCAAAGGAATTAGATGCCGATCTCATCAAGGCAGACCTTCTAGAACAAGGTTTGCCGTCGATCAACTTTGATCGCGTTAATGCTTTGGGCGACGCCATTCGCGCCGCCTCCACTGCACAACACTTCATCGCCGTTGTGCAAGAATACGCTGACGTATACGCGTCGTTAAATACGTGGAACTCTCACACCTCAACCCCTAATGGCAGGCGCCTCGACGCGTTAGTCGATGATCTCGCCTTTGATATCGTCGCTCCGCTGACCCCGACTCACTACCCGCTAAATATCGCGCATCGCCCGGATATACTCGACATAGCGTTATTAAAAAACGTAACTCTGCGCTTAAATTCGATTGAAGTAGTTTCAGAGTTAGATTCAGACCACCGTCCCGTCGTTATGAAGCTCGGTCGCGCTCCCGATTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGTGCATCAGCCTTGCTGAATCTGATCCACCATCGCTTCCGTTTAGTCCGGACTCTATCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCGTAACGTCACACATCACCTCGACATTAGATAGGTCATCGAAGCAAGTTGTAGCGGAGGACTTCCTTCACCGCTTCAAATTGCCCGATGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATCCGTGCGTACGATAGGTATCCTACCGCGGAAAATCGTATTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCACCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCTCAAAGGTCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGGTAGTAACTATGCCCCCTCTCGTAGGCCCCTCAGGCCGACTCGCGGCGTTCGATGATAACGAAAAAGCAGAGCTGCTGGCCGATACATTGCAAGCCCAGTGCATGCCCAGCATTCAATCCGCGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGCCTCCTTGCCACCCTTGGACGCGTTACTGCCCGTCACCTCAATGGAAGTTAAAGACCTGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCCGACGGTATATCTAACCGCGTTATTAAACTTTTACCCGTCCAACTCATCGTGATGTTGGCATCTATTTTCAATGCCGCTATGGCTAACTGTATCTTTCCCACGGTGTGGAAAGAAGCGGACGTTATCGGCATACACAAACCCGGTAAACCAAAAAATAATCCGACGAGTTATCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTCATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTACAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGACTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAACGGTTTGATTTTCAAACTATTCAACATGGGCGTGCCGGATAGTCTCGTGCTCATCATACGAGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTAGAGGGAACCCGCTCCTCCCCGCGACCACTCACGGCTGGAGTGCCGCAAGGCTCCGTTCTCTCACCGCTCCTATTTAGTTTATTTATTAATGATATTCCCCGGTCGCCGCCGACCCAGCTAGCCTTATTCGCTGACGACACAACCGTTTACTACTCAAGTAGAAACAAGTCCCTAATCGCGAGTAAACTCCAGAGCGCAGCGTTAGCCCTCGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCGGCGAAAAGCACAGCAGTGTTATTTCAAAGGGGAAACTCACCGCTTATTTCCTCCCGCATTAGGAGGAGAAATATCACTCCCCCGATCACCCTCTTCGGCCAACCTATACCCTGGGTCAGGAAGGTTAAGTACCTGGGAGTCACCCTGGATGCATCTATGACATTCCGCCCACACATAAAAACAGTCCGCGACCGTGCCGCATTCATTCTCGGCAGACTCTACCCCATGATCTGTAAGCGGAGTAAAATGTCCCTTCGAAACAAGGTGACACTATACAAAACTTGCATAAGGCTCGTCATGACTTACGCGAGTGTGGTGTTCGCTCACGCGGCCCGCGCATACATAGACACCCTCCAATCCCTACAGTCCCGCTTTTGCAGGTTAGCCGTCGGAGTTCCGTGGTTCGTGAGGAACGTTGACCTACACGACGACCTGGGCTTCGAATCAATCCGGAAATACATGAAGTCAGCGTCGGAACGGTACTTCGATAAGGCTATGGGTCATGATAATTGCCTTATCGTTGCCGCAGCTGACTACTCCTCGAATCCTGATTACACAAGAGCCAGTCACCGTCGACGCCCTAGACACGTCCTTACGGATCCATCAGATCCAATAACCTTTGCATTAGATGCCTTCAGCTCTAATACTAGGGGCAGGCTTAGGGACCCCAGTAACCGTACTCGTCGAACTCGACAAAGAGGTCGACGTGCAACCTAG

Protein

MEALFSEFLRLRHPKLTSEFLAFKADHAVSPLADSAVLVAPASYTAASAIPAAPASPILVGKTAASSAVAAAPLARSSAGSVGSDGRPASARRSPAPEPAAFSSSDSDSDMEVDLAPASSTDGFTLVQKGKKRAAESQTPAAAKIIKAANASRPRPPTPVAPPARATPSPRPVAQNKTQTPPPVILQEKAAWDRVSLALQAKKINFISARNLANGIQIKLTTPDDHRALSSYLRKERISFHTYTLQEERELRAVIRGIPKELDADLIKADLLEQGLPSINFDRVNALGDAIRAASTAQHFIAVVQEYADVYASLNTWNSHTSTPNGRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDILDIALLKNVTLRLNSIEVVSELDSDHRPVVMKLGRAPDSVPVTRTVVDWHTLCISLAESDPPSLPFSPDSIPSPQDTAEAIDIVTSHITSTLDRSSKQVVAEDFLHRFKLPDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRITEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDNEKAELLADTLQAQCMPSIQSADPVHVELVDSEVERRASLPPLDALLPVTSMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPTVWKEADVIGIHKPGKPKNNPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVLSPLLFSLFINDIPRSPPTQLALFADDTTVYYSSRNKSLIASKLQSAALALGQWFRKWRIDINPAKSTAVLFQRGNSPLISSRIRRRNITPPITLFGQPIPWVRKVKYLGVTLDASMTFRPHIKTVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRLVMTYASVVFAHAARAYIDTLQSLQSRFCRLAVGVPWFVRNVDLHDDLGFESIRKYMKSASERYFDKAMGHDNCLIVAAADYSSNPDYTRASHRRRPRHVLTDPSDPITFALDAFSSNTRGRLRDPSNRTRRTRQRGRRAT

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Keywords

Nucleotidyltransferase RNA-directed DNA polymerase Transferase Transposable element

Feature

chain Probable RNA-directed DNA polymerase from transposon BS

Uniprot

Q93137 Q9XXW0 O96546 V5GNJ2 J9LC21 A0A224XB44 + More
A0A2J7R7D0 A0A1Y1LKN6 A0A224X6Q4 A0A224X6S1 Q95SX7 A0A224X6T4 A0A142LX49 A0A2S2N814 A0A224XIB0

EC Number

2.7.7.49

Pubmed

10333566 10380107 28004739 7753626 12537569 25527032 + More

EMBL

U07847 AAA17752.1 AB018558 BAA76304.1 AF081103 AAC72921.1 + More
GALX01005299 JAB63167.1 ABLF02036316 ABLF02036319 ABLF02048663 ABLF02066977 GFTR01008262 JAW08164.1 NEVH01006736 PNF36716.1 GEZM01053022 JAV74219.1 GFTR01008279 JAW08147.1 GFTR01008271 JAW08155.1 AY060438 AAL25477.1 GFTR01008261 JAW08165.1 KU543685 AMS38375.1 GGMR01000676 MBY13295.1 GFTR01008246 JAW08180.1

Proteomes

UP000007819 UP000235965

PRIDE

Q93137 Q9XXW0 Q95SX7

Pfam

PF00078 RVT_1 + More
PF14529 Exo_endo_phos_2

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase
IPR000477   RT_dom

SUPFAM

SSF56219 SSF56219

Gene 3D

3.60.10.10

ProteinModelPortal

Q93137 Q9XXW0 O96546 V5GNJ2 J9LC21 A0A224XB44 + More
A0A2J7R7D0 A0A1Y1LKN6 A0A224X6Q4 A0A224X6S1 Q95SX7 A0A224X6T4 A0A142LX49 A0A2S2N814 A0A224XIB0

PDB

6AR3 E-value=0.0362688, Score=91

KEGG

105841788 no KO assigned | (RefSeq) predicted GPI-anchored protein 58

GO

GO:0003964 GO:0004519 GO:0006313

Length:

1125

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

3.79336

Exp number, first 60 AAs:

0.00612

Total prob of N-in:

0.00033

outside

1 - 1125

Pi

0

Theta

0

Tajima's D

0

CLR

0.005594

CSRT

0

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree