Gene

KWMTBOMO10876

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr18(+):5839398-5842766      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.749 Nuclear   Reliability : 1.95

CDS

ATGCAGCTCGGTCGCCCCCACAACCCAGTCACAGCTACGAGGACCATGGTGGACTGGAAGAAGCTGGGCAAATGCTTAGCCGATGCCGCTCCACCAATCCTCCCCTGCGGCCCGGATTCAACTCCATCCCCCGAGGACACAGTCGAATCCATAAACATCATCACGGATCACATTTCTTCCGCGATCATAAGATCCTCAAAAGAAGTCGATGTGGAGGATAGCTTCCACCGCATCAGACTGTCCCCCGAACTTAGGAACCTCCTAAGAGTTAGAAACGCGGCAATCCGGGCCTACGATCAACTTCCCACGCACTCAAACCGGATTCGGATGCGTCGTCTACAGCGGGATGTAAAATCTCGCCTAAGCGACGCCCGAAATGAGAATTGGGATAGTTACTTAGAAGGACTCGCGCCCTCTCATCAAGCATACTGGCGACTAGCAAGGACTCTCAAGTCCGAAACTACCGCTACTATGCCTCCTCTCGTACGCCCTTCAGGCCAACCACCGGCTTTCGATGACGATGACAAGGCAGAGTTGCTGGCCGATGCACTGCAAGAGCAGTGCACCACCAGCATTCAATACGCGGACCCCGAACACACCGAGGCAGTCGACGGGGAGGTCGAGCGCAGAGCTTCCCTGCCACCCTCGGACGCGTTACCCCCCATTACCTCTGACGAAGTTAGAGAAGTAATAGACAACCTTCAACCTAAGAAGGCACCCGGCTCCGACGGCATCCGCAACCGCGCGTTAAAACTATTACCAGTCCAACTGATAACAATGTTGGCTACCATCTTAAATGCCGCTATGACGCACTGCATCTTTCCGGCGGTATGGAAAGAAGCAGACGTTATCGGTATACACAAGCCGGGCAAACCGAATAATGAAACCGCTAGTTACCGTCCGATTAGTCTCCTCCCAGCGATAGGCAAAATTTACGAACGGCTCCTTCGGAAACGCCTCTGGGACTTCGTTACCGCGAATAAAATTCTAATAGACGAGCAGTTTGGATTCCGCGCCAAACACTCGTGCGTACAACAAGTGCACCGCCTCACGGAGCACATCTTAATAGGGCTAAATAGGCGTAAACAAATCCCGACCGGCGCCCTCTTCTTCGATGTAGCGAAGGCGTTCGACAAAGTCTGGCACAACGGTTTGATCTACAAACTGTACAACATGGGAGTGCCAGACAGACTCGTGCTCATCATACGAGACTTCTTGTCGAACCGTTCGTTTCGATATCGAGTAGAGGGAACTCGTTCTCGTCCCCGTCATCTGACTGCCGGAGTCCCGCAAGGCTCCGCACTCTCCCCGTTACTATTTAGTTTGTATATCAACGATATACCCCGGTCTCCGGAGACCCATCTAGCGCTCTTCGCCGATGACACGGCTATCTACTACTCGTGTAGGAAGATGTCGTTGCTTCATCGGCGACTCCAGACCGCAGTAACCACCATGGGACAGTGGTTCCGGAAGTGGCGAATAGACATTAACCCCACGAAAAGCACAGCGGTGCTATTCAAAAGGGGTCGCCCTCCGAATACCACTTCGAGCACCCCACTCCCCAATAGGCGCGTAAACACCTCCGCCGTTAGCCCCATCACTCTCTTTGACCAGCCCATACCGTGGGCCCCGAAGGTCAAATACCTAGGCGTCACCCTCGACAGAGGGATGACATTCCGTCCCCACGTAAAAACGGTACGCGATCGCGCCGCGTTTATACTAGGACGACTCTACCCAATGCTTTGTAGACGAAGCAAACTGTCCCTCCGCAACAAGGTAACCCTCTACAAAACTTGCATACGCCCCGTCATGACGTATGCAAGCGTAGTGTTCGCTCACGCGGCCCGCACCAACTTGAAACCCCTTCAGGTTATACAATCCCGATTCTGCAGGATAGCCGTCGGAGCACCATGGTTCCAGAGGAACGTGGACCTCCACGATGACCTGGAGCTCGACCCCGTCAGTAAGTATCTACAGTCGGCATCGCTGCGCCACTTTGAGAAGGCGGCACGACATGAGAACCCTCTTGTCGTGGCCGCCGGAAACTACATACCCGATCCTGTAGACCGTTTGTCCTATCCTGTGATGTACCTTTATAACAGGAGTTCTGAAGAAGCATTTTTTACGGAACTCCTGCTCCAACATCAAGTTACGGAAATCGAGTAA

Protein

MQLGRPHNPVTATRTMVDWKKLGKCLADAAPPILPCGPDSTPSPEDTVESINIITDHISSAIIRSSKEVDVEDSFHRIRLSPELRNLLRVRNAAIRAYDQLPTHSNRIRMRRLQRDVKSRLSDARNENWDSYLEGLAPSHQAYWRLARTLKSETTATMPPLVRPSGQPPAFDDDDKAELLADALQEQCTTSIQYADPEHTEAVDGEVERRASLPPSDALPPITSDEVREVIDNLQPKKAPGSDGIRNRALKLLPVQLITMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPNNETASYRPISLLPAIGKIYERLLRKRLWDFVTANKILIDEQFGFRAKHSCVQQVHRLTEHILIGLNRRKQIPTGALFFDVAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRHLTAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIYYSCRKMSLLHRRLQTAVTTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTSSTPLPNRRVNTSAVSPITLFDQPIPWAPKVKYLGVTLDRGMTFRPHVKTVRDRAAFILGRLYPMLCRRSKLSLRNKVTLYKTCIRPVMTYASVVFAHAARTNLKPLQVIQSRFCRIAVGAPWFQRNVDLHDDLELDPVSKYLQSASLRHFEKAARHENPLVVAAGNYIPDPVDRLSYPVMYLYNRSSEEAFFTELLLQHQVTEIE

Uniprot

Q93137   Q9XXW0   Q9BPQ0   A0A0N1PFV1   O96546   A0A139WA11   + More
A0A1Y1NA23   A0A139W8G9   V5GNF3   V5GNJ2   A0A2S2PR14   J9KKL3   Q07995   A0A3N5Z7I3   A0A023EYS8   A0A023EZE6   X1WLB2   A0A2S2QEE0   A0A224XF24   A0A2S2PPK8   A0A2H8U0H5   J9KC83   A0A2J7R7D0   A0A2S2Q383   A0A2M4BEF4   A0A2M4BEZ9   A0A2J7R8R8   A0A1Y1LKN6   A0A2M4BDA5   A0A2M4BD66   A0A2M4BD62   A0A2J7PDM0   A0A023F6S4   A0A2S2Q352   A0A2S2NGV8   J9M522   J9LC21   A0A2J7PVX3   J9KCZ4   A0A224X6U5   A0A0C9RJA4   A0A2S2N814   X1WN18   A0A2J7R4B7   A0A2M4CV52   X1WZH0   A0A2M4BD67   A0A224X6S1   A0A2J7RIW7   A0A2J7RM10   A0A2M4BDV6   X1WNI2   A0A2J7PMP6   A0A2M4CV42   A0A224XI99   A0A2J7Q4F7   A0A2J7RB54   A0A069DZC5   A0A2J7QUJ9   A0A1Y1KUU7   A0A069DW01   A0A2J7Q059   A0A1Y1KFR3   A0A0L0CBP5   A0A2S2Q7E7   A0A2J7RPU2   A0A2J7PMP9   A0A2J7RS81   K7IN67   A0A087UGF5   A0A2J7Q0Q6   A0A2J7PVE7   A0A2J7RS77   A0A2J7RKP3   A0A2J7QFL0  

Pubmed

10333566    26354079    10380107    18362917    19820115    28004739    + More
8387152    30086797    25474469    26334808    26108605    20075255   

EMBL

U07847    AAA17752.1    AB018558    BAA76304.1    AB055391    BAB21761.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    KQ971729    KYB24751.1    GEZM01008457    JAV94772.1    KQ973342    KXZ75569.1    GALX01005359    JAB63107.1    GALX01005299    JAB63167.1    GGMR01019198    MBY31817.1    ABLF02029306    ABLF02029314    ABLF02060138    S59870    AAB26437.2    RPOV01000134    RPJ78669.1    GBBI01004395    JAC14317.1    GBBI01004571    JAC14141.1    ABLF02042518    ABLF02057746    GGMS01006359    MBY75562.1    GFTR01008038    JAW08388.1    GGMR01018716    MBY31335.1    GFXV01007093    MBW18898.1    ABLF02033757    NEVH01006736    PNF36716.1    GGMS01002992    MBY72195.1    GGFJ01002256    MBW51397.1    GGFJ01002257    MBW51398.1    NEVH01006721    PNF37225.1    GEZM01053022    JAV74219.1    GGFJ01001842    MBW50983.1    GGFJ01001844    MBW50985.1    GGFJ01001843    MBW50984.1    NEVH01026386    PNF14434.1    GBBI01001646    JAC17066.1    GGMS01002955    MBY72158.1    GGMR01003407    MBY16026.1    ABLF02024246    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    NEVH01020940    PNF20481.1    ABLF02008463    GFTR01008251    JAW08175.1    GBYB01008290    JAG78057.1    GGMR01000676    MBY13295.1    ABLF02021177    ABLF02027367    ABLF02066338    NEVH01007443    PNF35684.1    GGFL01004957    MBW69135.1    ABLF02034467    GGFJ01001858    MBW50999.1    GFTR01008271    JAW08155.1    NEVH01003017    PNF40781.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    GGFJ01001857    MBW50998.1    ABLF02008153    ABLF02008462    ABLF02008464    NEVH01023962    PNF17612.1    GGFL01005012    MBW69190.1    GFTR01008256    JAW08170.1    NEVH01018383    PNF23463.1    NEVH01005938    PNF38077.1    GBGD01000880    JAC88009.1    NEVH01010546    PNF32261.1    GEZM01074951    JAV64378.1    GBGD01000799    JAC88090.1    NEVH01020071    PNF21969.1    GEZM01084969    JAV60363.1    JRES01000644    KNC29657.1    GGMS01004444    MBY73647.1    NEVH01001355    PNF42855.1    NEVH01023961    PNF17613.1    NEVH01000269    PNF43694.1    KK119692    KFM76444.1    NEVH01019964    PNF22161.1    NEVH01020963    PNF20308.1    NEVH01000280    PNF43672.1    NEVH01002716    PNF41415.1    NEVH01014858    PNF27387.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000235965    UP000037069    UP000002358    + More
UP000054359   

PRIDE

Q93137    Q9XXW0    Q9BPQ0   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF03372   Exo_endo_phos

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q93137   Q9XXW0   Q9BPQ0   A0A0N1PFV1   O96546   A0A139WA11   + More
A0A1Y1NA23   A0A139W8G9   V5GNF3   V5GNJ2   A0A2S2PR14   J9KKL3   Q07995   A0A3N5Z7I3   A0A023EYS8   A0A023EZE6   X1WLB2   A0A2S2QEE0   A0A224XF24   A0A2S2PPK8   A0A2H8U0H5   J9KC83   A0A2J7R7D0   A0A2S2Q383   A0A2M4BEF4   A0A2M4BEZ9   A0A2J7R8R8   A0A1Y1LKN6   A0A2M4BDA5   A0A2M4BD66   A0A2M4BD62   A0A2J7PDM0   A0A023F6S4   A0A2S2Q352   A0A2S2NGV8   J9M522   J9LC21   A0A2J7PVX3   J9KCZ4   A0A224X6U5   A0A0C9RJA4   A0A2S2N814   X1WN18   A0A2J7R4B7   A0A2M4CV52   X1WZH0   A0A2M4BD67   A0A224X6S1   A0A2J7RIW7   A0A2J7RM10   A0A2M4BDV6   X1WNI2   A0A2J7PMP6   A0A2M4CV42   A0A224XI99   A0A2J7Q4F7   A0A2J7RB54   A0A069DZC5   A0A2J7QUJ9   A0A1Y1KUU7   A0A069DW01   A0A2J7Q059   A0A1Y1KFR3   A0A0L0CBP5   A0A2S2Q7E7   A0A2J7RPU2   A0A2J7PMP9   A0A2J7RS81   K7IN67   A0A087UGF5   A0A2J7Q0Q6   A0A2J7PVE7   A0A2J7RS77   A0A2J7RKP3   A0A2J7QFL0  

PDB

6AR3     E-value=0.0158548,     Score=92

KEGG

105842121    no KO assigned | (RefSeq) uncharacterized LOC105842121

GO

GO:0003964   GO:0004519  

Length:

721

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.414590000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01184

outside

1  -  721

 

 

Pi

1.317238

Theta

3.079686

Tajima's D

-0.712726

CLR

0.231353

CSRT

0.197590120493975

Interpretation

Uncertain