Gene

KWMTBOMO10852

Annotation

PREDICTED:_protein_crooked_neck_[Bombyx_mori]

Location

Bomo_Chr18(+):5415078-5418617      View in EpiBrowser

Full name

Protein crooked neck      

Location in the cell

Cytoplasmic   Reliability : 3.635

CDS

ATGCCGAAAGTGGCAAAGGTGAAGAATAAAGCACCAGCAGAAATCCAAATAACAGCTGAACAATTACTTAGGGAAGCCAAAGAACGAGACCTTGAGATATTACCACCGCCACCTAAACAGAAAATATCTGATCCTGAGGAACTTCGAGACTACCAACATCGTAAACGTAAAGCATTTGAGGACAACATAAGAAAGAACAGACTTGTTATTGGGAACTGGCTTAAATATGCACAATGGGAAGAATCACAAAAGCAAATCCAAAGAGCTCGTTCAATATATGAGCGTGCTTTGGATGTGGATCACAGAAATGTTACCTTATGGCTGAAGTATACTGAAATGGAAATGAGGAACAGACAGGTAAACCATGCCCGTAATCTATGGGACAGAGCTGTTACAATTCTGCCAAGAGTATCTCAGTTTTGGTACAAATATACTTACATGGAGGAAATGTTGGAAAATGTAGCTGGAGCAAGACAGGTATTTGAACGTTGGATGGAATGGCATCCAGATGAGCAAGCTTGGCAAACATACATAAACTTTGAATTGAGGTACAAAGAACTTGAACGGGCTAGACAAATCTATGAACAGTTTGTTATGGTGCATCCAGATGTAAAGAATTGGATAAAATATGCAAAATTTGAAGAAAACCATGGTTTCATAAATGGCTCTAGGACAGTTTTTGAGAGAGCTGTTGAATTCTTTGGTGATGAAGAATTAGATGAAAGACTGTTTATAGCGTTTGCCAAATTTGAAGAAAATCAAAAAGAACATGACAGAGCAAGAGTGATTTACAAATATGCTCTGGATCATGTCCCAAAAGACAGAAATAAAGAACTTTATAAAGCTTATACTATTCATGAAAAGAAGTATGGTGATAGATCTGGCATTGAGGATGTAATAGTAAATAAGAGAAAGTATATGTATGAACAGGAAGTTATAGAGAATCCCACAAATTATGATGCATGGTTTGATTATATTAGATTAGTGGAGAATGAGGGTAATTTAGATGACATAAGAGACACATATGAGAGAGCAATTGCAAATATCCCTCCTTCAAAGGACAAACAATTTTGGAGGCGTTATATTTACTTGTGGATTAATTACGCTTTATATGAAGAGTTAGAAGCAGAAGATTTAGATCGAACAAGACAAGTTTACAGAACCTGTTTAGAATTAATTCCTCATAAGATATTTACTTTCTCAAAAATATGGCTCATGTATGCTCAGTTTGAAGTGAGATGTAAAGATTTAAAGCAAGCAAGAAAAACACTTGGTATGGCTCTGGGCATGTGCCCCAGAGATAAATTATACAGAGGTTATATAGACCTTGAGATACAGTTGAGAGAATTTGACAGATGTAGAATATTATACCAGAAATTCTTAGAGTATGGTCCAGAAAATTGTGTAACATGGATAAAGTTTGCAGAGTTAGAAACTCTGCTTGGAGATACAGATCGCGCAAGGGCTATTTATGAAATAGCTGTAGGTCAACAGAGATTAGATATGCCAGAATTGTTGTGGAAAAGCTATATCGATTTTGAGGTATCACAAGGAGAAACTGAAAAAGCAAGACAGCTTTATGAAAGACTTTTGGAACGAACAGTTCATGTCAAAGTGTGGCTTTCATATGCTAAATTTGAATTGAATGCTGAAAATGCTGATAATATTAATGTTGAATTGGCAAGACGGGTATATGAGCGTGCTAATGATAGTCTAAGAAGTGCAGGCGAAAAAGAATCGAGAGTTCTTCTCTTAGAAGCATGGAAGGAATTTGAAACAGAAATCGGAGATGAAGTGAAACTTGAAAAAGTCCTTGCCAAAATGCCTAGACGTGTCAAGAAGAGGCAGAAGATTATTAGTGAAGCTGGTGTTGAAGAAGGCTGGGAAGAAGTATTTGATTATATATTTCCAGAAGATGAAATGGTTAGACCTAATCTTAAATTGCTTGCTGCAGCTAAGAACTGGCGCAAACAACAAGAAATACCTCAAAGTACACAAAATGAAAAGGATGATAATGATGAGGAACCAGGAACCCCTGAAGGACATCCTACACAAGATAGTTCAAGTAATGATGGGTCAACAACGGCAGAATAA

Protein

MPKVAKVKNKAPAEIQITAEQLLREAKERDLEILPPPPKQKISDPEELRDYQHRKRKAFEDNIRKNRLVIGNWLKYAQWEESQKQIQRARSIYERALDVDHRNVTLWLKYTEMEMRNRQVNHARNLWDRAVTILPRVSQFWYKYTYMEEMLENVAGARQVFERWMEWHPDEQAWQTYINFELRYKELERARQIYEQFVMVHPDVKNWIKYAKFEENHGFINGSRTVFERAVEFFGDEELDERLFIAFAKFEENQKEHDRARVIYKYALDHVPKDRNKELYKAYTIHEKKYGDRSGIEDVIVNKRKYMYEQEVIENPTNYDAWFDYIRLVENEGNLDDIRDTYERAIANIPPSKDKQFWRRYIYLWINYALYEELEAEDLDRTRQVYRTCLELIPHKIFTFSKIWLMYAQFEVRCKDLKQARKTLGMALGMCPRDKLYRGYIDLEIQLREFDRCRILYQKFLEYGPENCVTWIKFAELETLLGDTDRARAIYEIAVGQQRLDMPELLWKSYIDFEVSQGETEKARQLYERLLERTVHVKVWLSYAKFELNAENADNINVELARRVYERANDSLRSAGEKESRVLLLEAWKEFETEIGDEVKLEKVLAKMPRRVKKRQKIISEAGVEEGWEEVFDYIFPEDEMVRPNLKLLAAAKNWRKQQEIPQSTQNEKDDNDEEPGTPEGHPTQDSSSNDGSTTAE

Description

May be involved in pre-mRNA splicing process. Involved in neurogenesis.

Subunit

Colocalizes with a complex containing snRNP proteins.

Similarity

Belongs to the crooked-neck family.

Keywords

Complete proteome   Developmental protein   Differentiation   mRNA processing   mRNA splicing   Neurogenesis   Nucleus   Reference proteome   Repeat  

Feature

chain  Protein crooked neck

Uniprot

A0A2A4JE21   A0A088ML72   A0A291P118   A0A291P120   A0A1V0M8A8   A0A0P0EUP4   + More
A0A2H1VMH2   A0A194PH50   A0A194QNM9   Q16W00   A0A182H3J2   A0A1I8N6A3   B0WMF3   A0A1Q3F2Y2   A0A0L0CCU8   A0A182UQY5   A0A182MWE0   A0A182VQW6   A0A2M4AQX0   A0A182YJV6   A0A182ULD6   A0A084VRV0   A0A182KM51   Q7PYD1   A0A182XBN0   A0A336MQE5   A0A182I0G6   A0A182JUL4   W8BPA9   A0A182R1H5   A0A182J8E7   A0A182N4W3   W5J4T2   A0A182QSC2   A0A182PEE6   A0A182FQL6   A0A182T8D3   A0A0K8V4Q4   A0A0A1X599   A0A034WVH3   A0A1I8NZM9   A0A0T6AU33   A0A0N0BKQ9   A0A088AAB8   A0A1A9WX46   A0A2A3E4B3   A0A1B0FPF4   A0A1B0BFU1   A0A1B0AC07   A0A1B0BVZ5   A0A1A9ULF4   B4Q182   A0A1B6FPF1   D6X558   A0A1A9XSZ8   B3P8Z5   A0A1W4V213   A0A1Y1KBA4   A0A1A9Y1R5   A0A3B0K5J9   B4I9T0   P17886   B3MYT2   B4L5U5   B5DKF4   A0A0M3QZJ6   A0A1B6D9W9   E9IV64   E0VFZ4   B4M7D3   B4JJ81   U4U2G7   T1HM51   A0A026VVA0   A0A0V0G855   A0A3L8D4I3   A0A232EP28   B4N1M0   K7IZB8   A0A1J1IHK3   A0A2J7Q660   E2AIS0   A0A0L7QNZ2   A0A195CPN5   F4WVK3   E2B3I6   A0A0J7L5Q8   A0A195BV78   A0A158NEF5   A0A195EP64   A0A195FKB5   B4H364   A0A1A9VSD0   A0A0C9RJP8   A0A0A9XKU8   A0A2J7PL27   L7MIM2   A0A023GGB1   A0A224YVE5   A0A151XJ98  

Pubmed

26385554    28756777    28986331    28349297    26445454    26354079    + More
17510324    26483478    25315136    26108605    25244985    24438588    20966253    12364791    14747013    17210077    24495485    20920257    23761445    25830018    25348373    17994087    17550304    18362917    19820115    28004739    2044955    10731132    12537572    10731137    12537569    12163015    15632085    21282665    20566863    23537049    24508170    30249741    28648823    20075255    20798317    21719571    21347285    25401762    26823975    25576852    28797301   

EMBL

NWSH01001729    PCG70325.1    KJ579209    AIN34685.1    MF706170    KZ150058    + More
ATJ44597.1    PZC74278.1    MF687642    ATJ44568.1    KU755511    ARD71221.1    KT261713    ALJ30253.1    ODYU01003204    SOQ41642.1    KQ459604    KPI92627.1    KQ461196    KPJ06580.1    CH477578    EAT38766.1    JXUM01003845    KQ560164    KXJ84073.1    DS231997    EDS31010.1    GFDL01013135    JAV21910.1    JRES01000586    KNC30037.1    AXCM01005019    GGFK01009865    MBW43186.1    ATLV01015780    KE525036    KFB40694.1    AAAB01008987    EAA01065.4    UFQT01000960    SSX28198.1    APCN01002077    GAMC01003585    JAC02971.1    ADMH02002134    ETN58403.1    AXCN02000188    GDHF01018392    JAI33922.1    GBXI01008216    JAD06076.1    GAKP01001184    JAC57768.1    LJIG01022870    KRT78302.1    KQ435695    KOX80872.1    KZ288392    PBC26334.1    CCAG010016287    JXJN01013668    JXJN01021549    CM000162    EDX01389.1    GECZ01029103    GECZ01017876    GECZ01015322    GECZ01005754    JAS40666.1    JAS51893.1    JAS54447.1    JAS64015.1    KQ971382    EEZ97205.1    CH954183    EDV45600.1    GEZM01087319    JAV58773.1    OUUW01000003    SPP78728.1    CH480825    EDW43961.1    X58374    AE014298    AL009195    AY051666    CH902632    EDV32776.1    CH933811    EDW06554.1    CH379063    EDY72003.1    CP012528    ALC49533.1    GEDC01014805    JAS22493.1    GL766135    EFZ15538.1    DS235129    EEB12300.1    CH940653    EDW62700.1    CH916370    EDV99633.1    KB631815    ERL86498.1    ACPB03008137    KK107796    EZA47662.1    GECL01001918    JAP04206.1    QOIP01000013    RLU15146.1    NNAY01003030    OXU20091.1    CH963925    EDW78259.1    CVRI01000052    CRK99733.1    NEVH01017540    PNF24062.1    GL439869    EFN66682.1    KQ414843    KOC60338.1    KQ977444    KYN02671.1    GL888387    EGI61824.1    GL445346    EFN89738.1    LBMM01000651    KMQ97888.1    KQ976401    KYM92487.1    ADTU01013276    KQ978625    KYN29674.1    KQ981490    KYN41110.1    CH479205    EDW30757.1    GBYB01013497    GBYB01013498    JAG83264.1    JAG83265.1    GBHO01022252    GDHC01014210    JAG21352.1    JAQ04419.1    NEVH01024529    PNF17019.1    GACK01001194    JAA63840.1    GBBM01003618    JAC31800.1    GFPF01006656    MAA17802.1    KQ982080    KYQ60407.1   

Proteomes

UP000218220    UP000053268    UP000053240    UP000008820    UP000069940    UP000249989    + More
UP000095301    UP000002320    UP000037069    UP000075903    UP000075883    UP000075920    UP000076408    UP000075902    UP000030765    UP000075882    UP000007062    UP000076407    UP000075840    UP000075881    UP000075900    UP000075880    UP000075884    UP000000673    UP000075886    UP000075885    UP000069272    UP000075901    UP000095300    UP000053105    UP000005203    UP000091820    UP000242457    UP000092444    UP000092460    UP000092445    UP000078200    UP000002282    UP000007266    UP000092443    UP000008711    UP000192221    UP000268350    UP000001292    UP000000803    UP000007801    UP000009192    UP000001819    UP000092553    UP000009046    UP000008792    UP000001070    UP000030742    UP000015103    UP000053097    UP000279307    UP000215335    UP000007798    UP000002358    UP000183832    UP000235965    UP000000311    UP000053825    UP000078542    UP000007755    UP000008237    UP000036403    UP000078540    UP000005205    UP000078492    UP000078541    UP000008744    UP000075809   

PRIDE

P17886   

Pfam

PF02184   HAT        + More
PF05843   Suf

Interpro

IPR003107   HAT        + More
IPR011990   TPR-like_helical_dom_sf       
IPR013026   TPR-contain_dom       
IPR008847   Suf       

SUPFAM

SSF48452   SSF48452       

Gene 3D

1.25.40.10    

ProteinModelPortal

A0A2A4JE21   A0A088ML72   A0A291P118   A0A291P120   A0A1V0M8A8   A0A0P0EUP4   + More
A0A2H1VMH2   A0A194PH50   A0A194QNM9   Q16W00   A0A182H3J2   A0A1I8N6A3   B0WMF3   A0A1Q3F2Y2   A0A0L0CCU8   A0A182UQY5   A0A182MWE0   A0A182VQW6   A0A2M4AQX0   A0A182YJV6   A0A182ULD6   A0A084VRV0   A0A182KM51   Q7PYD1   A0A182XBN0   A0A336MQE5   A0A182I0G6   A0A182JUL4   W8BPA9   A0A182R1H5   A0A182J8E7   A0A182N4W3   W5J4T2   A0A182QSC2   A0A182PEE6   A0A182FQL6   A0A182T8D3   A0A0K8V4Q4   A0A0A1X599   A0A034WVH3   A0A1I8NZM9   A0A0T6AU33   A0A0N0BKQ9   A0A088AAB8   A0A1A9WX46   A0A2A3E4B3   A0A1B0FPF4   A0A1B0BFU1   A0A1B0AC07   A0A1B0BVZ5   A0A1A9ULF4   B4Q182   A0A1B6FPF1   D6X558   A0A1A9XSZ8   B3P8Z5   A0A1W4V213   A0A1Y1KBA4   A0A1A9Y1R5   A0A3B0K5J9   B4I9T0   P17886   B3MYT2   B4L5U5   B5DKF4   A0A0M3QZJ6   A0A1B6D9W9   E9IV64   E0VFZ4   B4M7D3   B4JJ81   U4U2G7   T1HM51   A0A026VVA0   A0A0V0G855   A0A3L8D4I3   A0A232EP28   B4N1M0   K7IZB8   A0A1J1IHK3   A0A2J7Q660   E2AIS0   A0A0L7QNZ2   A0A195CPN5   F4WVK3   E2B3I6   A0A0J7L5Q8   A0A195BV78   A0A158NEF5   A0A195EP64   A0A195FKB5   B4H364   A0A1A9VSD0   A0A0C9RJP8   A0A0A9XKU8   A0A2J7PL27   L7MIM2   A0A023GGB1   A0A224YVE5   A0A151XJ98  

PDB

6QDV     E-value=0,     Score=2223

KEGG

101742693    K12869 crooked neck | (RefSeq) protein crooked neck

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0006396   GO:0016740   GO:0000974   GO:0000398   GO:0071007   GO:0000245   GO:0071013   GO:0071014   GO:0000381   GO:0008347   GO:0005737   GO:0007443   GO:0008366   GO:0007438   GO:0016607   GO:0071011   GO:0005634   GO:0003723   GO:0006397   GO:0005515   GO:0043565   GO:0003676   GO:0051028   GO:0005622   GO:0006810   GO:0003824  

Subcellular location

Nucleus speckle  

Length:

697

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00924999999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00150

outside

1  -  697

 

 

Pi

35.588419

Theta

155.893835

Tajima's D

-1.684172

CLR

2512.530901

CSRT

0.039698015099245

Interpretation

Possibly Positive selection