Gene

KWMTBOMO10847

Pre Gene Modal

BGIBMGA008456

Annotation

PREDICTED:_pituitary_homeobox_1_[Papilio_polytes]

Location

Bomo_Chr18(+):5274158-5305521      View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear   Reliability : 4.157

CDS

ATGTGGTTAGTCAGTGAGCGTCGGAGCCGAGCCGACGGCGACGGCGAGTGTAACGAAGTCGAAGTGAAGAACGCGGGAGAGCCGCGCTGCTCGCTAAGCCAGCGCGCCGGCCACAGCACGGTGGAGTTCAAGAGCACGGCGTGCGCGGGGGCCGGCGAGCCTCACGCGCCGCCTCTCGCCGCCCTGCCGGACCCGCAGCAGTTCAACATCTTCCCGGCCTTCTTCAGCCGCCAACTCAACTTCACGGGTGGCGGTGGCTGCGGACAAGGCTCTAAGATCATGGAGGAGTTGCGGCCGAACCTGGTGGGAGGATTGCTCGGTGTACCTGGCTTGCTGGACGAACACCAGGCGGATGCCAAGTTCCTCACTTCTGGCGGCGAGAGCAAATACACGCCCGACAAGAGCCGTAAGTGCAGCAACGCTTCTTCATCATCGGCGGAAGAATTCGGCGGTCTGTACGGAGGGGAACACGCCGCCACGCCTCCAGCACCTCCACTCAGTAGATCCTTGCATGACAACACAGAGGGAGCGTTTAAAAAGTTAAAGCCGGAGCCTGGTGGGAATGGGTCCGGTGCGTCGAGTGGTAATTCAGCACTATCGCCGGCTCTAGGACCACAGCACGCGGGCCACACGCCAACAACTGCATCATGTCCGACGCCAGCGAGGAGAAGACATCGAACAACATTCACACAGGAACAATTAGCAGAACTAGAAGCTGCATTCGCAAAGTCACATTACCCGGACATTTACTGTAGGGAGGAGCTGGCGAGGACTACGAAATTAAACGAAGCCAGAATACAGGTCTGGTTTCAAAACCGCCGCGCGAAGTATCGGAAACAAGAGAAACAATTGCAGAAGGCGTTGGCGCCGGCCGTGCTGCCTGGCTGCAATGGAATGATGAGGAACATTCAGGGCTACCGAGGATACCAGCCCTATCCACACCCCAATACCATCAACCGGTATCCACAGTTTTCCTTCTATGAACAGCATCACGGCAGCTACGAAGAACTACAGAAGGATATATTTTCTTTATCACAAATGGGAGGTGGATCGTACCCTATGCCACAAGGATTCTCTATGGGGCACAGTGCAAACATGAGCGCTGTTGGAATGAGACAAGACACTATGGGCATGAGTGCAGAAGACGAATGGTACAACAAATCTCTGTCAGCACTCCGGATGAACAGCGGGCACCACGCGAACCTAGCGGCGGCACCCATGTTGCAGTACCAGACCTAA

Protein

MWLVSERRSRADGDGECNEVEVKNAGEPRCSLSQRAGHSTVEFKSTACAGAGEPHAPPLAALPDPQQFNIFPAFFSRQLNFTGGGGCGQGSKIMEELRPNLVGGLLGVPGLLDEHQADAKFLTSGGESKYTPDKSRKCSNASSSSAEEFGGLYGGEHAATPPAPPLSRSLHDNTEGAFKKLKPEPGGNGSGASSGNSALSPALGPQHAGHTPTTASCPTPARRRHRTTFTQEQLAELEAAFAKSHYPDIYCREELARTTKLNEARIQVWFQNRRAKYRKQEKQLQKALAPAVLPGCNGMMRNIQGYRGYQPYPHPNTINRYPQFSFYEQHHGSYEELQKDIFSLSQMGGGSYPMPQGFSMGHSANMSAVGMRQDTMGMSAEDEWYNKSLSALRMNSGHHANLAAAPMLQYQT

Uniprot

A0A194PH54   A0A194QM45   A0A3S2TIJ5   A0A0L0BRI7   B4GW53   A0A1I8PB67   + More
B4NCC6   B5DL73   A0A182Q795   A0A084VAM9   B3MQR2   A0A182VPA6   A0A1W4VG24   Q9VWH1   B3NVP4   A0A0R1EGM5   B4JX14   X2JL88   B4L6V9   A0A3B0K6E3   A0A1S4GF07   A0A1I8N0H2   X2JFS5   B9EQW3   E2AWK2   A0A1I8N0H1   A0A1W4WEI0   A0A0M4F051   A0A1J1J8J4   Q7QC76   A0A088A9Z6   B4MA35   E0VIQ3   A0A3L8D4Z6   A0A182YHK3   A0A154PI49   A0A195CUD6   A0A2S2NRS0   A0A195FNS2   A0A0P5PKX0   A0A067RC91   A0A1S3GZA4  

Pubmed

26354079    26108605    17994087    15632085    24438588    10731132    + More
12537568    12537572    12537573    12537574    16110336    17569856    17569867    17550304    12364791    25315136    20798317    20566863    30249741    25244985    24845553   

EMBL

KQ459604    KPI92632.1    KQ461196    KPJ06587.1    RSAL01000113    RVE46959.1    + More
JRES01001467    KNC22652.1    CH479193    EDW26898.1    CH964239    EDW82485.2    CH379063    EDY72272.2    AXCN02000175    ATLV01004132    KE524190    KFB35023.1    CH902621    EDV44688.2    AE014298    AAF48968.3    CH954180    EDV46709.2    CM000162    KRK06577.1    CH916376    EDV95290.1    AHN59912.1    CH933812    EDW06105.2    OUUW01000031    SPP89797.1    AAAB01008859    AHN59913.1    BT058038    ACM16761.1    GL443346    EFN62166.1    CP012528    ALC49942.1    CVRI01000074    CRL08108.1    EAA08201.4    CH940655    EDW66094.2    DS235201    EEB13259.1    QOIP01000013    RLU15319.1    KQ434924    KZC11546.1    KQ977279    KYN04296.1    GGMR01007226    MBY19845.1    KQ981382    KYN42103.1    GDIQ01129140    JAL22586.1    KK852559    KDR21382.1   

Proteomes

UP000053268    UP000053240    UP000283053    UP000037069    UP000008744    UP000095300    + More
UP000007798    UP000001819    UP000075886    UP000030765    UP000007801    UP000075903    UP000192221    UP000000803    UP000008711    UP000002282    UP000001070    UP000009192    UP000268350    UP000095301    UP000000311    UP000192223    UP000092553    UP000183832    UP000007062    UP000005203    UP000008792    UP000009046    UP000279307    UP000076408    UP000076502    UP000078542    UP000078541    UP000027135    UP000085678   

PRIDE

Q9VWH1   

Pfam

PF00046   Homeodomain

Interpro

IPR001356   Homeobox_dom        + More
IPR017970   Homeobox_CS       
IPR009057   Homeobox-like_sf       

SUPFAM

SSF46689   SSF46689       

CDD

cd00086  homeodomain

ProteinModelPortal

A0A194PH54   A0A194QM45   A0A3S2TIJ5   A0A0L0BRI7   B4GW53   A0A1I8PB67   + More
B4NCC6   B5DL73   A0A182Q795   A0A084VAM9   B3MQR2   A0A182VPA6   A0A1W4VG24   Q9VWH1   B3NVP4   A0A0R1EGM5   B4JX14   X2JL88   B4L6V9   A0A3B0K6E3   A0A1S4GF07   A0A1I8N0H2   X2JFS5   B9EQW3   E2AWK2   A0A1I8N0H1   A0A1W4WEI0   A0A0M4F051   A0A1J1J8J4   Q7QC76   A0A088A9Z6   B4MA35   E0VIQ3   A0A3L8D4Z6   A0A182YHK3   A0A154PI49   A0A195CUD6   A0A2S2NRS0   A0A195FNS2   A0A0P5PKX0   A0A067RC91   A0A1S3GZA4  

PDB

3A01     E-value=4.6188e-15,     Score=198

KEGG

101742548    no KO assigned | (RefSeq) homeobox protein prophet of Pit-1

GO

GO:0005634   GO:0043565   GO:0006355   GO:0003677   GO:0000981   GO:0000977   GO:0003676   GO:0005515   GO:0051028   GO:0005622   GO:0006810   GO:0003824  

Subcellular location

Nucleus  

Length:

412

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00568

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01760

outside

1  -  412

 

 

Pi

331.543867

Theta

193.108354

Tajima's D

2.375798

CLR

0.288494

CSRT

0.933003349832508

Interpretation

Uncertain