SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10843
Annotation
PREDICTED:_uncharacterized_protein_LOC106130465_isoform_X2_[Amyelois_transitella]
Location in the cell
PlasmaMembrane   Reliability : 4.751
 

Sequence

CDS
ATGACAAGAAAGTTTTTGTTTTGTTTTCCACTTCGCGTGGGAAACGTTGTCTTCGGATTCATTGTTATTATAATAGCTGTAGCGGTATTGGCGTTCAGTCTATTCGAATTGGCAGATAACCTGGTGAATGGCTACAGGGACGACACGAGGTTCCGTGACTTCCAGAACCTTGAAAAAATCTTCGGTTCCGACCGTGACATATTAGTGACATACACTATTATTGTATATTACATGTCCTACATAATTGTGTCTCTATTATTGCTTTTGTTCAGTATTTTACTCGCCTGTGGTGCTTGGAAGGCCAATTCCTGTTTAGTGAGTACATTCTTCGTGTATAGTTTCTTCCATCTGTTCCTTACAATAGGACTTATTGTGTGGGAGGCTTTAACAGCTGGCTGGATACAACTCGGGCTGATTTTGCTCTCAGATGTGCTCCTCATTGTTTGCTTGTTCGGCGTCAAATATCTGATGGAAGCCATCCGAACAGGGAACATCTACAGTCGACCGGGAGAAATTTATGATAAGTACTAA
Protein
MTRKFLFCFPLRVGNVVFGFIVIIIAVAVLAFSLFELADNLVNGYRDDTRFRDFQNLEKIFGSDRDILVTYTIIVYYMSYIIVSLLLLLFSILLACGAWKANSCLVSTFFVYSFFHLFLTIGLIVWEALTAGWIQLGLILLSDVLLIVCLFGVKYLMEAIRTGNIYSRPGEIYDKY

Summary

Ontologies

Topology

Length:
176
Number of predicted TMHs:
4
Exp number of AAs in TMHs:
91.6386
Exp number, first 60 AAs:
22.86164
Total prob of N-in:
0.99995
POSSIBLE N-term signal
sequence
inside
1  -  12
TMhelix
13  -  35
outside
36  -  72
TMhelix
73  -  95
inside
96  -  103
TMhelix
104  -  126
outside
127  -  130
TMhelix
131  -  153
inside
154  -  176
 
 

Population Genetic Test Statistics

Pi
290.381689
Theta
165.897288
Tajima's D
2.327641
CLR
0.427468
CSRT
0.925253737313134
Interpretation
Uncertain
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