Gene

KWMTBOMO10840

Pre Gene Modal

BGIBMGA008370

Annotation

PREDICTED:_upstream_stimulatory_factor_2_[Plutella_xylostella]

Location

Bomo_Chr18(-):5051251-5054858      View in EpiBrowser

Transcription factor

bHLH

Location in the cell

Nuclear   Reliability : 4.591

CDS

ATGGCCAAAATTAAAATTGACGTTGATGACATACATGAGAATTCGCTCGATAACAGTGCGGACAGTGAATATCTCGGTATTGGTGAAGAAGGAGCTTTCGGTAGTACAGCGCCGAGACCACAGTTAGTACCTCAATCGTTTTTGGATACAAACGAAAATACCACTGCTTATCATTTCAAAGACATATCTGGTACAGTAACATATAAATTAATAACAATGACGGGTGAAGAAAATGTTGCAAATGCCTCACCGTCTCCTCCTCACAAATACTATGTGATAAGTAATCCAGTTGATGTCTTTGGACCATCTGCTGCTGCAAAAAAGCCAATCCGCAGGGATCCACTGCAAGCCAAAGCTGTTAGTACTAAAAAGCGTGACGATAAACGGAGAGCTACACACAATGAGGTTGAGAGACGTCGTCGAGACAAAATCAACAGTTGGATCACGAAGTTAGCAGCAATGGTGCCCAACTCGGGAATGCCAGACTCTGCCAGTAAGGGTGGTATATTGGCAAAGGCTTGTGATCACATTGCAGATCTCACAGAAAAACAAAAAAGGTTAGAAAAACTGGAATTAGACAACAAGAAATTAGTATTCGAAATATTGAGGCTGAACCAAGAATTGACTGAAGTGCGAAAAGAGAATTCTTCAATGAGAAACCAGCTCGCTGATAACTGTGTGGTCATTCCTAAAAAATCAAAAGACCCAAAATCATAG

Protein

MAKIKIDVDDIHENSLDNSADSEYLGIGEEGAFGSTAPRPQLVPQSFLDTNENTTAYHFKDISGTVTYKLITMTGEENVANASPSPPHKYYVISNPVDVFGPSAAAKKPIRRDPLQAKAVSTKKRDDKRRATHNEVERRRRDKINSWITKLAAMVPNSGMPDSASKGGILAKACDHIADLTEKQKRLEKLELDNKKLVFEILRLNQELTEVRKENSSMRNQLADNCVVIPKKSKDPKS

Uniprot

H9JFS3   A0A2A4K935   A0A2W1BTW0   A0A212EM49   A0A1E1W275   A0A194PIG1   + More
A0A2H1VMJ7   A0A194QM11   A0A1W4X569   A0A1W4XER1   A0A1B6JT09   A0A1Y1LJA0   A0A1B6H0T6   D2A376   A0A026VVK2   A0A1B6LYF6   A0A0P4VG84   F4WCJ0   A0A195ESQ8   A0A195EKU3   A0A158NIN9   A0A0C9R4E0   A0A195B6G7   A0A0L7QN54   A0A0C9QH01   A0A0C9R7L8   A0A195C5S0   E2C7K9   K7INR2   E9IUV9   A0A154PNL6   A0A0N0BFL7   A0A151XBH9   A0A310SEB6   A0A0A9VYU4   E2AG13   A0A2A3EQL8   A0A2R7WV44   A0A1D2MXY8   A0A088AP72   A0A1U7SLR7   A0A0M8ZTY6   A0A1U7S0Y6   A0A060W058   A0A232EWD4   A0A1U8CR22   A0A341CEG9   A0A2U3V5H6   A0A340Y6Q5   A0A2Y9F092   A0A2Y9LZ74   A0A383Z9D3   A0A1S3RGH8   A0A1S3RGB2   A0A1U7R5A0   A0A2Y9F118   A0A023FV49   A0A3B5LR72   A6N8P4   L8HTW3   A0A345G157   A0A2U3V5G7  

Pubmed

19121390    28756777    22118469    26354079    28004739    18362917    + More
19820115    24508170    30249741    27129103    21719571    21347285    20798317    20075255    21282665    25401762    26823975    27289101    24755649    28648823    22751099   

EMBL

BABH01001765    NWSH01000028    PCG80569.1    KZ149919    PZC77781.1    AGBW02013930    + More
OWR42549.1    GDQN01010012    JAT81042.1    KQ459606    KPI90880.1    ODYU01003357    SOQ42016.1    KQ461196    KPJ06593.1    GECU01005355    JAT02352.1    GEZM01054359    JAV73729.1    GECZ01001487    JAS68282.1    KQ971338    EFA02273.2    KK107796    QOIP01000013    EZA47675.1    RLU15347.1    GEBQ01011249    JAT28728.1    GDKW01003418    JAI53177.1    GL888070    EGI68170.1    KQ981979    KYN31268.1    KQ978739    KYN28890.1    ADTU01001826    GBYB01002755    JAG72522.1    KQ976582    KYM79852.1    KQ414860    KOC60053.1    GBYB01002754    JAG72521.1    GBYB01002756    JAG72523.1    KQ978292    KYM95518.1    GL453383    EFN76085.1    GL766058    EFZ15644.1    KQ435007    KZC13471.1    KQ435796    KOX73542.1    KQ982327    KYQ57707.1    KQ770827    OAD52579.1    GBHO01044247    GBHO01044246    GBHO01044245    GBHO01044244    GBRD01012873    GDHC01005482    JAF99356.1    JAF99357.1    JAF99358.1    JAF99359.1    JAG52953.1    JAQ13147.1    GL439206    EFN67623.1    KZ288193    PBC34028.1    KK855412    PTY22445.1    LJIJ01000401    ODM97860.1    KQ435878    KOX69926.1    FR904308    CDQ58619.1    NNAY01001876    OXU22665.1    GBBL01001594    JAC25726.1    EF219407    EF625884    ABP88825.1    ABR20897.1    JH883435    ELR46487.1    LWLT01000004    MF953285    AXG51119.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000053240    UP000192223    + More
UP000007266    UP000053097    UP000279307    UP000007755    UP000078541    UP000078492    UP000005205    UP000078540    UP000053825    UP000078542    UP000008237    UP000002358    UP000076502    UP000053105    UP000075809    UP000000311    UP000242457    UP000094527    UP000005203    UP000189705    UP000193380    UP000215335    UP000189706    UP000252040    UP000245320    UP000265300    UP000248483    UP000261681    UP000087266    UP000261380    UP000291000   

PRIDE

H9JFS3   

Pfam

PF00010   HLH

Interpro

IPR011598   bHLH_dom        + More
IPR036638   HLH_DNA-bd_sf       

SUPFAM

SSF47459   SSF47459       

Gene 3D

4.10.280.10    

CDD

cd00083  HLH

ProteinModelPortal

H9JFS3   A0A2A4K935   A0A2W1BTW0   A0A212EM49   A0A1E1W275   A0A194PIG1   + More
A0A2H1VMJ7   A0A194QM11   A0A1W4X569   A0A1W4XER1   A0A1B6JT09   A0A1Y1LJA0   A0A1B6H0T6   D2A376   A0A026VVK2   A0A1B6LYF6   A0A0P4VG84   F4WCJ0   A0A195ESQ8   A0A195EKU3   A0A158NIN9   A0A0C9R4E0   A0A195B6G7   A0A0L7QN54   A0A0C9QH01   A0A0C9R7L8   A0A195C5S0   E2C7K9   K7INR2   E9IUV9   A0A154PNL6   A0A0N0BFL7   A0A151XBH9   A0A310SEB6   A0A0A9VYU4   E2AG13   A0A2A3EQL8   A0A2R7WV44   A0A1D2MXY8   A0A088AP72   A0A1U7SLR7   A0A0M8ZTY6   A0A1U7S0Y6   A0A060W058   A0A232EWD4   A0A1U8CR22   A0A341CEG9   A0A2U3V5H6   A0A340Y6Q5   A0A2Y9F092   A0A2Y9LZ74   A0A383Z9D3   A0A1S3RGH8   A0A1S3RGB2   A0A1U7R5A0   A0A2Y9F118   A0A023FV49   A0A3B5LR72   A6N8P4   L8HTW3   A0A345G157   A0A2U3V5G7  

PDB

1AN4     E-value=2.27775e-11,     Score=163

KEGG

101739969    K09106 upstream stimulatory factor | (RefSeq) upstream stimulatory factor 1

GO

GO:0006355   GO:0046983   GO:0001666   GO:0006366   GO:0043565   GO:0009411   GO:0019086   GO:0032869   GO:0019901   GO:0016589   GO:0042803   GO:0043425   GO:0046982   GO:0055088   GO:0048188   GO:0042826   GO:0000432   GO:0000981   GO:0005667   GO:0005634   GO:0008270   GO:0003676   GO:0005515   GO:0051028   GO:0005622   GO:0006810   GO:0003824  

Length:

238

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0029

Exp number, first 60 AAs:

0

Total prob of N-in:

0.15255

outside

1  -  238

 

 

Pi

167.894659

Theta

149.462813

Tajima's D

0.387656

CLR

0.577721

CSRT

0.484725763711814

Interpretation

Uncertain