SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10835  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA008452
Annotation
PREDICTED:_putative_ATP-dependent_RNA_helicase_DHX57_[Bombyx_mori]
Full name
Putative ATP-dependent RNA helicase DHX57      
Alternative Name
DEAH box protein 57
Location in the cell
Nuclear   Reliability : 2.868
 

Sequence

CDS
ATGGATAATCAAAGTAAACAATTAGCTGAAGACTTTTTCTTAAGAGAGCCTGTAGACGCCCGCATCAGAAAAGTCAAAGATGAGCCCAAAGAAGAATCACACCCGACTCTCAAAGTTGAAATGCAAACAATTCGTTTGAATCCGGACTCACAGAAGATAATATTAGATACATTGAGGTATATCCATGGTTCTGAATTCAAATTGGGCAGTGCTAGTCTTTACAAGGATAAAGGTTCAAATCTGGGAAACAGGTATTGGATGGAAAGAGGCAATTTAGTTGTCCAAGGAGGATGTGACTATTCTCTTAACATGAAACCTGATATACAGAGCTCAGAAGCTAGACTTAGATCTTTTGCTTTATCAAAATTAGAAAAATACCACTTCCATAAAGCACATTGTGCAGAAGCCTTAGAGATAGCAGCAGAAAGTGTAGAAAAGTCCTTAGAGATTTTATTTTATAAATATTTTAAGATAGACCCAGAGGATAAACCGGAAAATGCCCTCTCAAATTCAGAGTTAGAAGAGATGAGAATGGATGAAAAAGCAGTATTAGAATCAATATATGATACCAGTTTCAAAACGAAAGATGCAGATGTATGGGTTGTCAAATTAGATCTAGACTACTTAACAAAGCTATACGCAAATAAAGTTGATGCACCGAAAAAGAAAACAAACATAAATTACAATAATAAAGGGAAACCAAAAGAGATGTGTAAACTTATTTTAAAGGGACACTGTAGATTTGGTGATAAATGTAAGTTTTCGCATGAAATTAATACAGAGAAAACTCAGCCCGATACAGAAAACACTGGAACTCAGAAAATTACGTATGAATTAGAAGTAAGGTTTCCGAAAGACACACTGTATCCTTATCAACCCCCATTATTGTTTTTCAAAACGGAAAACCGTACTGATACCATACCTGATTTAACTTGTTTGAAAATAACATGTAGACTTGTAGACGAGGCGAAAATTCTTGCACAAGATGGAGTACCAAGTATATATTCCATTGTGGAATTGCTACAAAATGAAGAAGATATCATAAATTTTATAAAATTTGATACAAGATCATTTTTAGAACCTTCAGAAGCTCTATTTCCACAATTAATAGAGGACGAAGGTAAACATGAGGTTAAACCAAGTCATTACAAAAAAGGTGTTATCAAAGACATAAGGAATAACATAAATTTTGAAGAAGTTTTGAGAGAAAATAAAGAAATAGCTAAGAGATGGTTAGAAAAGAGGGAAAATAATAGGTACAACAAAATGATGTCAGATAGAAGAAAATTGCCTGCTTGGCAGAAGAAGAATGATATATTGAATGCTTTGAAAAAATCACAGATAGTAGTGATCAGCGGTGAGACCGGTTGTGGTAAAAGCACACAAGTACCTCAGTACATACTGGATGACTGGTTGAATAATTTCTCCAAAGATGGTCCTGAACATGTCGAGATAATCTGTACTCAACCGAGAAGAATATCTGCTATTGGCGTGGCAGACAGGGTTGCTGATGAACGCGTGGAGAAAACTGGCCAAGTTGTTGGATATCAGATTCGACTGGAGAGCAAAATTTCTTCAAAAACTCGCCTAACATTCTGTACGACTGGGATCCTGCTCCGTAGGTTAGAATACGATCCTCAGTTGAAGTCGGTAACACATATCTTAGTCGATGAAGTGCACGAGAGATCCGAAGAGAGTGACTTTCTTTTGTTAATATTAAGAGATCTGGTCAAAGTCCGGAAGGACCTGAATGTAATATTGATGAGTGCAACACTGAATGCTGATCTGTTCTCGGATTACTTTGGAAATGTTCCAGTATTAGAGATCCCAGGTAGGACATTCCCTGTTGAACAATTCTTCTTAGAAGAAATTATGGATATGACGAATTATGTGTTAGAGGAGAATGGACAGTATTCTCGTAAAGTTAAAAAGGGTGATAAAGAGAGGCGAATAGATCTGGAAACTGAATTGGAAACTTGCGACGTAAGAGCCGATTCGACCGAAGCCCCTAAACTATCGATACGAGATGAAAATCTGACTATAGGACAGATGATAGCAAGATATCCGAAATGCTCCAAAATAACGTGCAAGAATATGTACCTCATGGACACTGAAAAGATAAATTCAGAATTAGTCGAGCATGTACTTAATTACATAGTAAATGGTGACCATAAATGGCCAAGAGAGGGCGCTATACTAATATTTCTACCTGGGATTCAAGAGATTATGTCTCTATACGATCAGCTCGTTGATAGCCACACATTCAGTCCGAAAACAGGTAAATACATGTTAGTTCCGCTACATTCGACTTTGTCAAGCGAGGAACAAGCTCAAGTGTTCAAGAAGCCGCGGGAGGGCGTCAGGAAAATTGTACTGTCCACGAACATCGCTGAGACGTCGGTGACCATCGACGATTGCGTGTTCGTCGTGGACTGCGGACGGATGAAGGAAAAGAGGTTCGATTCGAATCGCAACATGGAATCGTTAGACCTGGTGTGGGTGTCGAGAGCGAATGCGAAACAGCGGAAAGGTCGCGCCGGACGCGTCATGCCCGGAGTCTGCGTGCATCTGTACACGTCTCACAGATACCACCACCACCTGTTGGAGCAGCCCGTACCGGAGATACACAGGGTGCCGCTAGAGCAGCTGGTGTTGAAAATAAAGATACTGCCGCTGTTCAAAGACATGAGCACCCATGAAGTCTTAGGCAAAACTATAGAACCGCCCATGAAGCAGAATGTAGATGGCGCTCTCTGTCGCTTACAAGATGTCGGAGCTTTAGACAAAGCTTTCGTTCTGACCGCGCTCGGGAAACACTTGGCAGCCCTACCGGTGGATGTGCGGATCGGAAAGCTTATGTTGTTCGGTGCTATATTCTGTTGTGTCGACTCAGCGTTAACTATGGCTGCGTTTTTGAGCCATAAAAGTCCTTTCGTTGCGCCCTTTGGTAAGAAGGGAGAAGCGGATGCTAAAAGGAGAGAATTCGCGTGCTCAAACAGCGATCAATTAACTACATTAAAAGCATACAGGAAATGGCAACAGGCCATGAAATCGAGTACCTACGCAGCCTTGGTGTTCGCAAACGAGAACTTCTTGTCGCACAAAACTCTTTTGATGTTGGCCGACATCAAACATCAACTTCTGGGCTTGTTGGCGTCTATAGGATTCGTGCCTGACATGCCTGCTCTCAGGAAGAAAATGCGAAAGGATTCCGTCGCCAGTTTGACCGGAGACGAACTCAATACAAACGGTAACAATGATAAGTTATTAGCGGCCATTTTGTGCGCAGCCTTGTATCCGAACGTGGTGAAAGTCCTGACGCCGGAGAAGTCCTTCCACATGCAAGCCGGCGGCGCCATACCTCGCCAGCCGAACCCTGAGGAGTTGAAGTTCAAAACGAAATCCGACGGTTTCGTGGCCCTACACCCTTCGTCGGTCAATTCTACAGTGGGATACTTCGCGAGCCCTTACTTAGTCTACCAGGAGAAGGTGAAGACATCGAGGGTCTTCATACGGGAGTGCTCTATGGTGCCTCTACTACCGTTGGTGCTGTTTTCTGGATGTAGTCTTGGGATCGAACTTCACAACGGTACTTTTATAGTGTCCCTCGAAGACGGCTGGATCATGTTTCAAGTTGAAAAACACGAGGTCGCGGAAATGCTGAAAACGATTCGAGTCGAACTAATAAATCTTCTAGAAGAGAAAATAAACGATCCCTCATTGAATTTGTTGCACTACGAAAAGGGGAATCGTATAATAAAGACTATAGTTCAAGTCGTTACCAAAGACTAG
Protein
MDNQSKQLAEDFFLREPVDARIRKVKDEPKEESHPTLKVEMQTIRLNPDSQKIILDTLRYIHGSEFKLGSASLYKDKGSNLGNRYWMERGNLVVQGGCDYSLNMKPDIQSSEARLRSFALSKLEKYHFHKAHCAEALEIAAESVEKSLEILFYKYFKIDPEDKPENALSNSELEEMRMDEKAVLESIYDTSFKTKDADVWVVKLDLDYLTKLYANKVDAPKKKTNINYNNKGKPKEMCKLILKGHCRFGDKCKFSHEINTEKTQPDTENTGTQKITYELEVRFPKDTLYPYQPPLLFFKTENRTDTIPDLTCLKITCRLVDEAKILAQDGVPSIYSIVELLQNEEDIINFIKFDTRSFLEPSEALFPQLIEDEGKHEVKPSHYKKGVIKDIRNNINFEEVLRENKEIAKRWLEKRENNRYNKMMSDRRKLPAWQKKNDILNALKKSQIVVISGETGCGKSTQVPQYILDDWLNNFSKDGPEHVEIICTQPRRISAIGVADRVADERVEKTGQVVGYQIRLESKISSKTRLTFCTTGILLRRLEYDPQLKSVTHILVDEVHERSEESDFLLLILRDLVKVRKDLNVILMSATLNADLFSDYFGNVPVLEIPGRTFPVEQFFLEEIMDMTNYVLEENGQYSRKVKKGDKERRIDLETELETCDVRADSTEAPKLSIRDENLTIGQMIARYPKCSKITCKNMYLMDTEKINSELVEHVLNYIVNGDHKWPREGAILIFLPGIQEIMSLYDQLVDSHTFSPKTGKYMLVPLHSTLSSEEQAQVFKKPREGVRKIVLSTNIAETSVTIDDCVFVVDCGRMKEKRFDSNRNMESLDLVWVSRANAKQRKGRAGRVMPGVCVHLYTSHRYHHHLLEQPVPEIHRVPLEQLVLKIKILPLFKDMSTHEVLGKTIEPPMKQNVDGALCRLQDVGALDKAFVLTALGKHLAALPVDVRIGKLMLFGAIFCCVDSALTMAAFLSHKSPFVAPFGKKGEADAKRREFACSNSDQLTTLKAYRKWQQAMKSSTYAALVFANENFLSHKTLLMLADIKHQLLGLLASIGFVPDMPALRKKMRKDSVASLTGDELNTNGNNDKLLAAILCAALYPNVVKVLTPEKSFHMQAGGAIPRQPNPEELKFKTKSDGFVALHPSSVNSTVGYFASPYLVYQEKVKTSRVFIRECSMVPLLPLVLFSGCSLGIELHNGTFIVSLEDGWIMFQVEKHEVAEMLKTIRVELINLLEEKINDPSLNLLHYEKGNRIIKTIVQVVTKD

Summary

Catalytic Activity
ATP + H2O = ADP + H(+) + phosphate
Similarity
Belongs to the DEAD box helicase family. DEAH subfamily.
Keywords
Alternative splicing   ATP-binding   Coiled coil   Complete proteome   Helicase   Hydrolase   Metal-binding   Nucleotide-binding   Phosphoprotein   Polymorphism   Reference proteome   Zinc   Zinc-finger  
Feature
chain  Putative ATP-dependent RNA helicase DHX57
splice variant  In isoform 3.
sequence variant  In dbSNP:rs11893062.
EC Number
3.6.4.13
EMBL
BABH01001740    BABH01001741    KZ149919    PZC77790.1    RSAL01000065    RVE49412.1    + More
KQ459606    KPI90886.1    KQ461196    KPJ06600.1    GEZM01088929    JAV57824.1    CH477987    EAT34591.1    DS231836    EDS33170.1    AXCN02001208    GFDL01012330    JAV22715.1    JXUM01057118    JXUM01057119    JXUM01057120    KQ561940    KXJ77101.1    KQ971338    EFA01881.1    AXCM01001303    APCN01001981    AAAB01008799    EAA03817.1    ATLV01019177    KE525264    KFB43897.1    ADMH02002124    ETN58755.1    NNAY01002261    OXU21698.1    KQ434786    KZC05188.1    CCAG010007175    JXJN01009412    CH964239    EDW82407.2    KA648685    AFP63314.1    CVRI01000021    CRK91672.1    GAMC01001926    JAC04630.1    GBXI01014234    JAD00058.1    AE014298    AY119481    AAF47973.2    AAM50135.1    CM000162    EDX02044.1    CH379064    EAL31803.2    KRT06576.1    KRT06577.1    GAKP01013679    JAC45273.1    CP012528    ALC48383.1    CH902621    EDV44666.1    OUUW01000003    SPP78417.1    CH954180    EDV46119.1    GDHF01022487    JAI29827.1    CH916371    EDV91974.1    CH940653    EDW62832.1    CH933812    EDW06069.1    KRG07137.1    GL442629    EFN63229.1    GBYB01008904    JAG78671.1    GGFK01007117    MBW40438.1    CH479196    EDW27556.1    GDHC01012084    JAQ06545.1    GECZ01006999    JAS62770.1    ACPB03010059    LJIG01000126    KRT86814.1    KQ435726    KOX78120.1    GDHF01021512    JAI30802.1    KB632278    ERL91270.1    APGK01013181    KB738931    ENN82433.1    NEDP02005491    OWF40041.1    JH816757    EKC33469.1    RQTK01001217    RUS71410.1    LSYS01009753    OPJ58742.1    KB375613    EMC83655.1    JH880939    ELR57774.1    AK057423    AC018693    BC053623    BC060778    BC065278    BC131534    AF283512    AKCR02000106    PKK20613.1    AJFE02059709    AJFE02059710    AJFE02059711    AJFE02059712    AJFE02059713    AJFE02059714    AJFE02059715    AJFE02059716    AJFE02059717    AJFE02059718    AACZ04001986    NBAG03000286    PNI47868.1    AAKN02023810    AAKN02023811    CABD030013316    CABD030013317    CABD030013318    AAPE02005306    ADFV01011940    ADFV01011941    ADFV01011942    ADFV01011943    ADFV01011944    ADFV01011945    ADFV01011946    ADFV01011947    ADFV01011948   
Pfam
PF05773   RWD        + More
PF00270   DEAD
PF18044   zf-CCCH_4
PF07717   OB_NTP_bind
PF00271   Helicase_C
PF04408   HA2
PF00642   zf-CCCH
Interpro
IPR006575   RWD-domain        + More
IPR007502   Helicase-assoc_dom       
IPR027417   P-loop_NTPase       
IPR041367   Znf-CCCH_4       
IPR036855   Znf_CCCH_sf       
IPR001650   Helicase_C       
IPR014001   Helicase_ATP-bd       
IPR000571   Znf_CCCH       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR011709   DUF1605       
IPR016135   UBQ-conjugating_enzyme/RWD       
IPR015940   UBA       
IPR002464   DNA/RNA_helicase_DEAH_CS       
IPR009060   UBA-like_sf       
SUPFAM
SSF90229   SSF90229        + More
SSF52540   SSF52540       
SSF54495   SSF54495       
SSF46934   SSF46934       
Gene 3D
PDB
5VHE     E-value=2.28757e-164,     Score=1490

Ontologies

Topology

Length:
1263
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
1.7265
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00005
outside
1  -  1263
 
 

Population Genetic Test Statistics

Pi
282.271747
Theta
185.350044
Tajima's D
1.500738
CLR
0.001955
CSRT
0.790410479476026
Interpretation
Uncertain
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号