Gene

KWMTBOMO10825

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr18(+):4044480-4045813      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.157 Mitochondrial   Reliability : 1.286

CDS

ATGGTATGTAGTGCGTGTGCACGTCTCAGCCCCAGTGTGGTCAGAGCGCGGAGGGCCCAATCTCGGCGGTCCGTGCTGGAGTCATGGTCCAGACGGCTGGCCGATCCTTCGGCTGGTCGTAGGACCGTCGAGGCGATTCGCCCGGTTCTTGTGAACTGGGTGAATCGTGACAGAGGACGCCTCACTTTCCGGCTCACGCAGGTGCTCACTGGGCATGGTTGCTTCGGTGAGTTCCTGCACCGGATCGGAGCCGAGCCGACGGCAGAGTGCCACCATTGTGGTTGCGACTTGGACACGGCGGAGCACACGCTCGTTGCCTGCCCCGCATGGGAGGGGTGGCGCCGTGTCCTCGTCGCAAAAATAGGAAACGACTTGTCGTTGCCGAGTGTTGTGGCATCGATGCTCGGTGACGACGAGTCGTGGAAGGCGATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGCGTGAGAGACGCACAGGCCCGCCGCCGTCGAGCGGGGGCCAGGGAGGCGGATCTCGCCCAAGCCCTGGCCCTCTAA

Protein

MVCSACARLSPSVVRARRAQSRRSVLESWSRRLADPSAGRRTVEAIRPVLVNWVNRDRGRLTFRLTQVLTGHGCFGEFLHRIGAEPTAECHHCGCDLDTAEHTLVACPAWEGWRRVLVAKIGNDLSLPSVVASMLGDDESWKAMLDFCECTISQKEAAGRVRDAQARRRRAGAREADLAQALAL

Cofactor

FAD

Similarity

Belongs to the FBPase class 1 family.
Belongs to the GMC oxidoreductase family.

Uniprot

Q868Q4   Q5KTM7   A0A0J7KCI1   A0A0J7KM11   A0A0J7K2M2   A0A3L8D4Y9   + More
A0A0J7KJB9   A0A3L8DDS1   A0A2W1BSQ5   Q8MY27   A0A0J7MZM4   A0A2W1B333   A0A2W1BDU5   Q8MY33   Q8MY31   A0A3S2P7E0   A0A3S2LNH8   Q8MY35   A0A0J7N1D9   A0A3S2NGT9   A0A2W1BY04   A0A3S2PJK0   A0A0J7KIY3   A0A2H1W776   A0A0J7KS67   A0A0J7KKS4   A0A3S2N998   A0A0J7L0U0   A0A2H1WNZ5   A0A0J7KIQ5   A0A2H1W4U7   A0A2H1VYR8   A0A3L8DY91   A0A0J7KJH4   A0A0J7KQK3   A0A0J7KM81   A0A0J7KJG6   A0A3L8D6D2   A0A0J7KT62   A0A0J7JZF7   A0A0J7JZ13   A0A3L8DXT9   A0A3L8DDV9   A0A0J7KJ07   A0A2S2P2F0   J9LAC1   A0A0J7KQU9   A0A2H8TIE5   A0A0J7KFG9  

Pubmed

12644555    30249741    28756777   

EMBL

AB090825    BAC57926.1    AB126050    BAD86650.1    LBMM01009501    KMQ88083.1    + More
LBMM01005707    KMQ91279.1    LBMM01016102    KMQ84557.1    QOIP01000014    RLU15083.1    LBMM01006538    KMQ90523.1    QOIP01000009    RLU18544.1    KZ149950    PZC76665.1    AB078935    BAC06462.1    LBMM01012957    LBMM01012956    KMQ85900.1    KMQ85901.1    KZ150386    PZC71062.1    KZ150308    PZC71477.1    AB078930    BAC06454.1    AB078931    BAC06456.1    RSAL01000006    RVE54258.1    RSAL01003504    RVE40273.1    AB078929    BAC06452.1    LBMM01012027    KMQ86470.1    RSAL01000109    RVE47213.1    KZ149922    PZC77700.1    RSAL01000014    RVE53298.1    LBMM01006909    KMQ90209.1    ODYU01006757    SOQ48893.1    LBMM01003679    KMQ93242.1    LBMM01006022    KMQ91008.1    RSAL01000481    RVE41577.1    LBMM01001564    KMQ96079.1    ODYU01009945    SOQ54696.1    LBMM01006996    KMQ90129.1    ODYU01006342    SOQ48109.1    ODYU01005282    SOQ45985.1    QOIP01000002    RLU25407.1    LBMM01006657    KMQ90417.1    LBMM01004272    KMQ92618.1    LBMM01005634    KMQ91349.1    LBMM01006671    KMQ90407.1    QOIP01000012    RLU16027.1    LBMM01003452    KMQ93523.1    LBMM01019838    KMQ83439.1    LBMM01019839    KMQ83438.1    QOIP01000003    RLU25053.1    QOIP01000010    RLU18098.1    LBMM01006662    KMQ90413.1    GGMR01010769    MBY23388.1    ABLF02017307    LBMM01004152    KMQ92762.1    GFXV01002090    MBW13895.1    LBMM01008349    KMQ88951.1   

Proteomes

UP000036403    UP000279307    UP000283053    UP000007819   

PRIDE

Q868Q4    Q5KTM7   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF00316   FBPase
PF01421   Reprolysin
PF07776   zf-AD
PF00096   zf-C2H2
PF00732   GMC_oxred_N

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR033391   FBPase_N       
IPR000146   FBPase_class-1       
IPR028343   FBPtase       
IPR024079   MetalloPept_cat_dom_sf       
IPR001590   Peptidase_M12B       
IPR012934   Znf_AD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR036188   FAD/NAD-bd_sf       
IPR012132   GMC_OxRdtase       
IPR000172   GMC_OxRdtase_N       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR012337   RNaseH-like_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57667   SSF57667       
SSF51905   SSF51905       
SSF57756   SSF57756       
SSF53098   SSF53098       

Gene 3D

3.60.10.10     3.40.390.10     3.50.50.60    

CDD

cd00354  FBPase

ProteinModelPortal

Q868Q4   Q5KTM7   A0A0J7KCI1   A0A0J7KM11   A0A0J7K2M2   A0A3L8D4Y9   + More
A0A0J7KJB9   A0A3L8DDS1   A0A2W1BSQ5   Q8MY27   A0A0J7MZM4   A0A2W1B333   A0A2W1BDU5   Q8MY33   Q8MY31   A0A3S2P7E0   A0A3S2LNH8   Q8MY35   A0A0J7N1D9   A0A3S2NGT9   A0A2W1BY04   A0A3S2PJK0   A0A0J7KIY3   A0A2H1W776   A0A0J7KS67   A0A0J7KKS4   A0A3S2N998   A0A0J7L0U0   A0A2H1WNZ5   A0A0J7KIQ5   A0A2H1W4U7   A0A2H1VYR8   A0A3L8DY91   A0A0J7KJH4   A0A0J7KQK3   A0A0J7KM81   A0A0J7KJG6   A0A3L8D6D2   A0A0J7KT62   A0A0J7JZF7   A0A0J7JZ13   A0A3L8DXT9   A0A3L8DDV9   A0A0J7KJ07   A0A2S2P2F0   J9LAC1   A0A0J7KQU9   A0A2H8TIE5   A0A0J7KFG9  

KEGG

100127037    K22984 odorant receptor | (RefSeq) Or-46, BmOr-46, Or46; olfactory receptor 46

GO

GO:0003964   GO:0005975   GO:0016787   GO:0050660   GO:0016614   GO:0008270   GO:0003676   GO:0016021  

PANTHER

PTHR11556  

Length:

184

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00625000000000001

Exp number, first 60 AAs:

1e-05

Total prob of N-in:

0.14475

outside

1  -  184

 

 

Pi

65.34972

Theta

63.006054

Tajima's D

0.528922

CLR

54.106092

CSRT

0.525823708814559

Interpretation

Uncertain