Gene

KWMTBOMO10799

Annotation

PREDICTED:_uncharacterized_protein_LOC101738890_[Bombyx_mori]

Location

Bomo_Chr18(-):3264465-3266122      View in EpiBrowser

Full name

Retrovirus-related Pol polyprotein from transposon 17.6      

Location in the cell

Nuclear   Reliability : 2.36

CDS

ATGCTCGACCAAAAAATCATACAACCTTCTCTATCTCCTTGGTCCTCGCCTATATGGATTGTCCCAAAAAAGACCGATGCCTCTGGTCAAAAGAAATGGCGGATTGTAATTGATTATAGGAAACTTAACGATATTACTATTGGTGAAACTTACCCCATACCTAACATTGTCGAAATTCTTGACCAATTAGGAAACTCAAAGTACTTCACAACATTAGATCTCGCTTCTGGCTTTCATCAGATAACAATGAATCAAAAAGACGCTTGCAAAACCGCGTTTAGTGTCCCTCAAGGACACTTTGAATTTACAAGGATGCCCTTTGGCCTAAAAAATGCCCCATCAACTTTTCAGCGCTTAATGAACAATGTGCTCACTGGCCTACAAGGTGAGCGCTGTTTTGTGTATTTAGACGATATTGTGTCTTATTCTCATGACCTTAAAACTCACATTGAAAACCTCGGTGCAATATTCGATAGACTACGTAAATTTAACCTAAAATTACAGCCAGACAAATGTGAATTTCTACGAAAAGAAGTCGGCTACCTAGGTCATATAATTAGCGAGGAAGGACTAAAACCAGACCCTAATAAAATAAAATCCGTTAAAGAGTTTCCAATCCCAAAATCCCCCAAGGACATTAAATCCTTTTTAGGACTAATATCATACTATAGACGCTTTATCCCAGAGTTCTCCAAACTATCAAAACCACTCACATCCCTCTTGAAAAAGGATGCATCTTTTCTTTGGACCAACGAACAACAATTAGCTTTCGAAACGCTCAAAGATAAACTCATTACCTCTCCTGTATTAATATACCCAGATTTTACTAAACCATTCAACCTTACTTGCGATGCATCGAACTATGCAATATCAGCTATCCTTTCGCAAGGTCCTATAGGTAAAGACCGCCCTGTAGCCTATGCATCCAGAACACTAAATAAATGTGAAATTAACTATAGCACAACCGAAAAGGAGTTGCTAGCTATAGTTTGGGGCTGCAATTCTTTTAGACCGTATTTATTTGGTCGTAAGTTCATCATAGTAACAGATCATCGTCCACTAAAATGGCTATTTAACCATACTGATCCAAGTAGCAAACTACAACGTTGGCGTCTCCAACTACAAGAATTTGAATACGAAATTATATATAGAAAAGGCAAATTAAATTCAGCAGCTGACGCTCTATCTCGTTATCCCGTTAATCCTGTCTATACCGAAAATCCTGAAAACTTAAATGAAAATGAACTGATTGATCTGGGTCCATTAGACATCAGTCCCTTTAATGACGAAGTCCCTGATTTTACGCCTCTAAGTCCAAGTCCTAACAATTTACCTGATACTCTGCTCCAACCAGAAATTGTACCCGAAATCACTGATCAAAATCCAATAATAGAAAATGAACCCCAACCTTCTAGTAGTCAAGCTCCTATTCTACAACAACCTAATACTTTAATAAGCCCCATAACTTACCTGATCTCGACGACACCTATACTAAATTCTTAA

Protein

MLDQKIIQPSLSPWSSPIWIVPKKTDASGQKKWRIVIDYRKLNDITIGETYPIPNIVEILDQLGNSKYFTTLDLASGFHQITMNQKDACKTAFSVPQGHFEFTRMPFGLKNAPSTFQRLMNNVLTGLQGERCFVYLDDIVSYSHDLKTHIENLGAIFDRLRKFNLKLQPDKCEFLRKEVGYLGHIISEEGLKPDPNKIKSVKEFPIPKSPKDIKSFLGLISYYRRFIPEFSKLSKPLTSLLKKDASFLWTNEQQLAFETLKDKLITSPVLIYPDFTKPFNLTCDASNYAISAILSQGPIGKDRPVAYASRTLNKCEINYSTTEKELLAIVWGCNSFRPYLFGRKFIIVTDHRPLKWLFNHTDPSSKLQRWRLQLQEFEYEIIYRKGKLNSAADALSRYPVNPVYTENPENLNENELIDLGPLDISPFNDEVPDFTPLSPSPNNLPDTLLQPEIVPEITDQNPIIENEPQPSSSQAPILQQPNTLISPITYLISTTPILNS

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Miscellaneous

The open reading frame is located in a copia-like transposable element called 17.6.

Keywords

Aspartyl protease   Endonuclease   Hydrolase   Nuclease   Nucleotidyltransferase   Protease   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  Retrovirus-related Pol polyprotein from transposon 17.6

Uniprot

E0VZF9   E0VZF7   A0A1Y1KJL2   D7GXP0   A0A0J7KFZ4   A0A0J7K6M0   + More
A0A2J7PEY0   A0A2J7RJQ6   J9LRA5   A0A2S2NLS2   D7EKG9   A0A2J7QWM2   A0A2J7Q0T0   A0A0J7JY03   A0A2J7R948   A0A2S2NNZ3   A0A2J7PPW9   A0A2S2NN14   A0A2S2QW04   A0A2J7PP03   A0A0K8TSF6   A0A2J7RBZ9   A0A0K8TRU1   A0A2J7QTC1   X1WUD2   Q65353   A0A0J7KIJ2   X1WM57   A0A2J7PFW5   X1WLD0   A0A3Q0JL77   A0A0J7N7Q7   X1X2K6   A0A0J7KM44   A0A1Y1KML2   A0A2J7RRF2   A0A2J7PDA1   J9M441   A0A355BCA1   A0A0J7JZT1   A0A2J7PRU8   A0A0A9Z1T0   A0A0A9XJZ5   A0A2S2P749   A0A1B6DI21   Q5BN17   A0A2S2NFT1   U5ES61   X1WLD3   A0A1B6E8Y4   A0A2H8TVW1   X1WLJ7   A0A1W7R6F0   V5GQE1   A0A224XA16   A0A0J7KIE0   A0A2H8THY5   A0A3Q0JCA5   A0A1W7R695   A0A3Q0JG65   A0A1W7R6J9   V5I864   O46115   X1XQI4   V5FY26   D6WE31   A0A224XIQ6   A0A2S2NQ60   A0A0A9XD39   A0A0A9XG63   J9LWC7   A0A2S2PBQ7   Q967T2   A0A146L836   A0A0K8WF08   X1X3W2   J9KPM2   K7JCQ6   A0A1W7R686   O96740   O76326   J9LJV3   A0A0K8WBI5   A0A2S2PWE1   J9LS83   P04323   K7IUU7   A0A0A9YU38   A0A146KMA2   J9KGC3   X1WUN1   A0A0K8S7R8   Q8T5U3   A0A0A9YJ44   X1WX89  

Pubmed

20566863    28004739    18362917    19820115    26369729    1692964    + More
30148503    25401762    12537573    9405380    26823975    20075255    10331252    10571049    6209583   

EMBL

DS235852    EEB18765.1    EEB18763.1    GEZM01081533    JAV61609.1    GG694348    + More
EFA13518.1    LBMM01008064    KMQ89174.1    LBMM01013045    KMQ85846.1    NEVH01026087    PNF14896.1    NEVH01002988    PNF41072.1    ABLF02030471    ABLF02066562    GGMR01005468    MBY18087.1    DS497745    EFA13136.1    NEVH01009425    PNF32982.1    NEVH01019964    PNF22169.1    LBMM01022303    KMQ82914.1    NEVH01006666    PNF37360.1    GGMR01006290    MBY18909.1    NEVH01022642    PNF18384.1    GGMR01005970    MBY18589.1    GGMS01012487    MBY81690.1    NEVH01023280    PNF18074.1    GDAI01000738    JAI16865.1    NEVH01005888    PNF38366.1    GDAI01000740    JAI16863.1    NEVH01011195    PNF31840.1    ABLF02041284    M32662    AAA92249.1    LBMM01007099    KMQ90041.1    ABLF02001345    ABLF02006651    ABLF02006655    ABLF02054079    ABLF02054906    ABLF02062695    NEVH01025646    PNF15218.1    ABLF02041728    LBMM01008712    KMQ88680.1    ABLF02024213    ABLF02042472    LBMM01005670    LBMM01005669    KMQ91307.1    KMQ91309.1    GEZM01078735    JAV62639.1    NEVH01000607    PNF43410.1    NEVH01026392    PNF14303.1    DNYX01000282    HBK83635.1    LBMM01019926    KMQ83421.1    NEVH01021952    PNF19057.1    GBHO01004397    JAG39207.1    GBHO01026164    JAG17440.1    GGMR01012631    MBY25250.1    GEDC01017847    GEDC01011974    JAS19451.1    JAS25324.1    AY928610    AAX28844.1    GGMR01003444    MBY16063.1    GANO01002504    JAB57367.1    ABLF02011604    ABLF02041632    GEDC01002915    JAS34383.1    GFXV01006571    MBW18376.1    ABLF02011176    ABLF02041729    GEHC01000906    JAV46739.1    GALX01004629    JAB63837.1    GFTR01008672    JAW07754.1    LBMM01006919    LBMM01006918    KMQ90193.1    KMQ90194.1    GFXV01001507    MBW13312.1    GEHC01000948    JAV46697.1    GEHC01000905    JAV46740.1    GALX01005230    JAB63236.1    AJ000387    CAA04050.1    ABLF02041376    GALX01005891    JAB62575.1    KQ971324    EFA01226.1    GFTR01008505    JAW07921.1    GGMR01006639    MBY19258.1    GBHO01024992    JAG18612.1    GBHO01024993    JAG18611.1    ABLF02012660    ABLF02012662    GGMR01014274    MBY26893.1    AF364550    AAK52058.1    GDHC01015253    JAQ03376.1    GDHF01002622    JAI49692.1    ABLF02041371    AAZX01005108    GEHC01000961    JAV46684.1    AJ009736    CAA08807.1    AF056940    AAC33318.1    ABLF02008732    GDHF01004109    JAI48205.1    GGMS01000510    MBY69713.1    X01472    AAZX01005109    GBHO01007885    JAG35719.1    GDHC01021754    JAP96874.1    ABLF02065961    ABLF02025379    ABLF02025385    ABLF02041365    ABLF02057103    GBRD01016627    JAG49199.1    AF492764    AAM11674.1    GBHO01012506    JAG31098.1    ABLF02035279    ABLF02041373   

Proteomes

UP000009046    UP000007266    UP000036403    UP000235965    UP000007819    UP000079169    + More
UP000002358   

PRIDE

Q5BN17    O46115    Q967T2    O96740    P04323    Q8T5U3    + More

Pfam

PF17917   RT_RNaseH        + More
PF00078   RVT_1
PF00665   rve
PF17921   Integrase_H2C2
PF17919   RT_RNaseH_2
PF00077   RVP
PF00098   zf-CCHC
PF01661   Macro
PF12259   Baculo_F
PF02902   Peptidase_C48
PF03732   Retrotrans_gag

Interpro

IPR036397   RNaseH_sf        + More
IPR041588   Integrase_H2C2       
IPR000477   RT_dom       
IPR041373   RT_RNaseH       
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       
IPR021109   Peptidase_aspartic_dom_sf       
IPR001969   Aspartic_peptidase_AS       
IPR001995   Peptidase_A2_cat       
IPR002589   Macro_dom       
IPR018061   Retropepsins       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR022048   Envelope_fusion-like       
IPR003653   Peptidase_C48_C       
IPR038765   Papain-like_cys_pep_sf       
IPR005162   Retrotrans_gag_dom       

SUPFAM

SSF53098   SSF53098        + More
SSF50630   SSF50630       
SSF57756   SSF57756       
SSF54001   SSF54001       

Gene 3D

3.30.420.10     2.40.70.10    

ProteinModelPortal

E0VZF9   E0VZF7   A0A1Y1KJL2   D7GXP0   A0A0J7KFZ4   A0A0J7K6M0   + More
A0A2J7PEY0   A0A2J7RJQ6   J9LRA5   A0A2S2NLS2   D7EKG9   A0A2J7QWM2   A0A2J7Q0T0   A0A0J7JY03   A0A2J7R948   A0A2S2NNZ3   A0A2J7PPW9   A0A2S2NN14   A0A2S2QW04   A0A2J7PP03   A0A0K8TSF6   A0A2J7RBZ9   A0A0K8TRU1   A0A2J7QTC1   X1WUD2   Q65353   A0A0J7KIJ2   X1WM57   A0A2J7PFW5   X1WLD0   A0A3Q0JL77   A0A0J7N7Q7   X1X2K6   A0A0J7KM44   A0A1Y1KML2   A0A2J7RRF2   A0A2J7PDA1   J9M441   A0A355BCA1   A0A0J7JZT1   A0A2J7PRU8   A0A0A9Z1T0   A0A0A9XJZ5   A0A2S2P749   A0A1B6DI21   Q5BN17   A0A2S2NFT1   U5ES61   X1WLD3   A0A1B6E8Y4   A0A2H8TVW1   X1WLJ7   A0A1W7R6F0   V5GQE1   A0A224XA16   A0A0J7KIE0   A0A2H8THY5   A0A3Q0JCA5   A0A1W7R695   A0A3Q0JG65   A0A1W7R6J9   V5I864   O46115   X1XQI4   V5FY26   D6WE31   A0A224XIQ6   A0A2S2NQ60   A0A0A9XD39   A0A0A9XG63   J9LWC7   A0A2S2PBQ7   Q967T2   A0A146L836   A0A0K8WF08   X1X3W2   J9KPM2   K7JCQ6   A0A1W7R686   O96740   O76326   J9LJV3   A0A0K8WBI5   A0A2S2PWE1   J9LS83   P04323   K7IUU7   A0A0A9YU38   A0A146KMA2   J9KGC3   X1WUN1   A0A0K8S7R8   Q8T5U3   A0A0A9YJ44   X1WX89  

PDB

4OL8     E-value=7.118e-65,     Score=628

KEGG

101738890    no KO assigned | (RefSeq) uncharacterized LOC101738890

GO

GO:0003964   GO:0003676   GO:0004519   GO:0015074   GO:0005634   GO:0004190   GO:0008270   GO:0016021   GO:0008234  

Length:

500

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00385

Exp number, first 60 AAs:

0.00019

Total prob of N-in:

0.00177

outside

1  -  500

 

 

Pi

163.326149

Theta

64.917587

Tajima's D

4.73293

CLR

0

CSRT

0.999950002499875

Interpretation

Uncertain