Silkworm Genome Informatics Database

Gene

KWMTBOMO10793

Pre Gene Modal

BGIBMGA008386

Annotation

PREDICTED:_uncharacterized_protein_LOC106136493_[Amyelois_transitella]

Location

Bomo_Chr18(-):3021247-3028777 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.421

CDS

ATGTTTCAAAATAATTTAATGATGGAATGCACTCAGAGACTTGAGTACACGCAAGATTTATATGGGAGTCAAACGGAGAAAATTCATAATGAACAGATTGGTTTCCTGGGCATAAACAGCATGAAATATCCTGTAATGAAAGGTCCTAATAAAATAGGAAGGGACCCACAGTCGTGCAGTATCGTGATCAGTCAAAATTGTATTTCAAGGCACCATGCTGTGATAAATGTATTAAACCACAACAGTTTCATGATCATGGATCTGGATTCCACCTCCAAAACGAAGTTGTATGGAAAAAATCTAAAACCATACATTCCACATCCATTACAAAACGGGGATATCCTAGAATTCGGAAACGTCGTCGGAATATTTAGATTACTGGAAGAAGAAAGCGACTTGCCAATGACGCAGGCCATAGATATACCCGAAACTCCAGTTCAGACGAAATTTTTGCCTAGGCCCTACAACACACATACCGTAATCCCTGAATCACCTGACGTTAGTGATCGAGATGATTCCCTCTTAACAGTATCACAGCCAAAACATAAACAGCTTAAAAACGATAGTTTAAACATACACATGGCAGCAATCGGTTTTGATAAAACTAAAAATACAAATTGCAAATCAGCAAATAAATCTAATTCGATACGCCTTTCTATGAATGAATCAAGCACTGATCAACCAACCACGTCTAATGGCCCTAGTTTTAACAATAAAAACGATATTGATGTCATTAACATACACGATATGGAAACACAGCCAACTTTTGCTAAGCCGAATGAAGGGACCGATATATTTACGGCAGACACAGAACAGATAAATAAAGAAAACTACGACCCAGACTCTATACACAGTATGAATACTCAACTACCGTCGAATCTAGAACGGCTACCGGCGTCAGCTCAGGTGTCGAAGAATTTAAACCAAAACGGTGTGCAACTTAATTTGTATGCGACCAACGAAGTAACTGACGACAGTATATTTGATGCTGCCACACAACTTATTACAACGGAAATCGACCAAGAATCCCCAATAAAAAGAAAAGAAAATTCCGAAGAAACCAACAATAATAAAGCCGCCGATGATTCGGTAAAGTCAAACGTAACTCTAGAATTTGAAGAAATAGACAGTGAATTGTTAGAAGAGTCTTTCGAGTCCCAATCACTTATAGCCAACGAGAAAATGAACAGTGTCTCACAACAAAAAGCACCGTGTTCTAGTGTGAGTAGAAAGATGCGAATATTATCATACACTGAAAAATTAAGCCAATCGAAGATCCCGGAGAAAAATGAAGATGATGATTCTACAGATTGCGAGGATAATAACTGTATTGAATTTAAACAATGCAGATCGAAATCACCAATCATAAATAGCCCTACTACTGAAAAGGGAAATAAAGCAACGGCACATGTTCGAAGTAAATTAAATAGTATCAACAAAGTGTGTTTCGAGGAAATGCTTACCCAAGTCATAGGAGAAGAAGATGAAGTTCTAACACAAGTGATAGAACTAGAAAGCCCATCGAAAAAAGGTTTAAATGACGATAATATAGAAGATGCGCCGACACAAATAATCCTTGAGGTCGAACCTAAGGGTGTTGCAGAAGAACCGCTCACTCAGCAGTATTCTGAAGAAATTATTAGTCCCTTTAAAGTTCCATTAAGGTTTAAGACGAAACCGTCGCTTGGTACTCCCAAATCAATTACAATTGACAACAAAGACGAAGTAGATGAAACCAACGATAAATACTACCAATCAACACAAGAAGTAATGAGCGACTTATGCTCACAAACAGACAATTCTCCGACAATAATTAACATAGATAAAGATTTAATAAACAATAAACAAATAAAAAAATTAGTGCTGGACAAATCTTCGAGCAGCAGCGAGAGCGAAGATCGAGTCAACAAATTCGTGACAAGTCTAACGAAGGATCAAATAACGAATATGATCGGTGTAGACACCCAGGACAACTTGAATAAATCAACAGATTCCTCGGACGTGGATTGCACTCCTAAGAAAGTTAAGCCACTCAACATCATGGACGTAGAGCTACCGAACACACAAGAGATAAAGGAGTGCTTAGGGAAATGTACGAATCAAATTATCGTCGAGTCTTCAAGCGATTCCGAAATCGAAAACTATGCGGAAGAATTATGCGATCCATTTTTGTTATTGAAAAGGAGAAAGAAAGAAACGAGTGCGAAAATGAACTTAAATGATAAGTTCGAAGATTTGTCGACCAAAACCCGACGAACCCGCAAGCCCACTGCTAAACTACTAGAGTCTTGTGAAAACAATAAATCAAGCGACATCAGTATAACCGACTCGAATAATAGAACAAGAGGGAATAATTCAATTAAAAAACCTAAACAAGAAAAATCAAAGAATAACAAAAGACAAAATAAGGAAAGTAAAAAGAACACATCAAGTACAAAATTAAAAGTAATTAAAAGTGATGATTCAATGGAAGTTAAAGAACTAACGGAAAGTTCTCCAGGCAGCACCAATGGGTCACGAGTTAAAAAAGATAATAAAAATAAACAAAAGAAATTAGAAACAGCCGAAAGAGGTGGAATAAAGCGCAACACTCGCGCCAAAAGCAAACTCGACACGGAGAACGAATCCAATCGAGAACGGACTAAACAAGAAAATACTAGAAAAAATGGACGCACCAAGGAGAAACGTGATGTTTCCGTTGCTTCTAGAACATCGGAAGTTGAAAGCGAAAACTACGATGAAAAAAATTTTGCAGGGAAAACGACATTGGGGGCGTTTAAAATCCCCCTTGTACCGGAGCGAGTACGATCGACCAGAAGCATGAAGAAGGATGAAGATAAAATTGCTGAATCTGAGAGCGAATCGAAATCGTCGGTCAGCGTGCGGCGCAGCAAGAGGCAGTTGAAGTCGATACTAAAGAACTCGAGTGATCAGAGCGTAGTGTACGACGCGCCCTCGTCGCGGCCCGAGAAGAGGCCGGCGCACACTTACAGCAACGCCGCCAGCTCCAAGCGGAGCAGGCCCGACACTGCCTCCCCTGTTCCTCCGAAGCCCACCCTGGCCCTAGCTACCGGTTCCCAGCGCGTGCTGTTCACGGCCTTCGCCAACGAGGAGGTGCAAGCGAAACTGGAGAACTTAGGCGCGTCGATAGTGTCGGACGTGTACAAGTGCACGGTGGTGCTGACGTTCCAGATAAAGCGCACGTTCAAGTTGCTGTGCGCGGTGGGGCTGGGCCGGCCCGTGGTGGGGCCCGCCTGGGTGCAGGCCTGCGCAGACGCACGCGCCCTCGTCGATCCATGGTTGCACCTGTTGAAAGACGAGACGGCGGAGCGGCGCTTCAGGTTTAGTCTCCACAGGACGCTGACCGGGAAACGGAACTTCTTGAAACGTTACAACGTCTCCTCGACGCCCAGCGTCCTGCCCAGCGCCGCCGAGATGAAGCTGATCGTGGAGTGCTCGGGGGGCGCGTGGCGGGAGGGGGGACGGAACTGGGTGTGCGTCACGTCCGCGGCCGACAGACATCTGTGGCCTGAACTCAGGACTCGAGGAGCGACCTTGGTCTCCACCGAGTTCATCCTCGAGGGAGTGCTGCGACAGAGCGTTAATATAGCTGGAACTTCTATAACCGTTAACGGTTAG

Protein

MFQNNLMMECTQRLEYTQDLYGSQTEKIHNEQIGFLGINSMKYPVMKGPNKIGRDPQSCSIVISQNCISRHHAVINVLNHNSFMIMDLDSTSKTKLYGKNLKPYIPHPLQNGDILEFGNVVGIFRLLEEESDLPMTQAIDIPETPVQTKFLPRPYNTHTVIPESPDVSDRDDSLLTVSQPKHKQLKNDSLNIHMAAIGFDKTKNTNCKSANKSNSIRLSMNESSTDQPTTSNGPSFNNKNDIDVINIHDMETQPTFAKPNEGTDIFTADTEQINKENYDPDSIHSMNTQLPSNLERLPASAQVSKNLNQNGVQLNLYATNEVTDDSIFDAATQLITTEIDQESPIKRKENSEETNNNKAADDSVKSNVTLEFEEIDSELLEESFESQSLIANEKMNSVSQQKAPCSSVSRKMRILSYTEKLSQSKIPEKNEDDDSTDCEDNNCIEFKQCRSKSPIINSPTTEKGNKATAHVRSKLNSINKVCFEEMLTQVIGEEDEVLTQVIELESPSKKGLNDDNIEDAPTQIILEVEPKGVAEEPLTQQYSEEIISPFKVPLRFKTKPSLGTPKSITIDNKDEVDETNDKYYQSTQEVMSDLCSQTDNSPTIINIDKDLINNKQIKKLVLDKSSSSSESEDRVNKFVTSLTKDQITNMIGVDTQDNLNKSTDSSDVDCTPKKVKPLNIMDVELPNTQEIKECLGKCTNQIIVESSSDSEIENYAEELCDPFLLLKRRKKETSAKMNLNDKFEDLSTKTRRTRKPTAKLLESCENNKSSDISITDSNNRTRGNNSIKKPKQEKSKNNKRQNKESKKNTSSTKLKVIKSDDSMEVKELTESSPGSTNGSRVKKDNKNKQKKLETAERGGIKRNTRAKSKLDTENESNRERTKQENTRKNGRTKEKRDVSVASRTSEVESENYDEKNFAGKTTLGAFKIPLVPERVRSTRSMKKDEDKIAESESESKSSVSVRRSKRQLKSILKNSSDQSVVYDAPSSRPEKRPAHTYSNAASSKRSRPDTASPVPPKPTLALATGSQRVLFTAFANEEVQAKLENLGASIVSDVYKCTVVLTFQIKRTFKLLCAVGLGRPVVGPAWVQACADARALVDPWLHLLKDETAERRFRFSLHRTLTGKRNFLKRYNVSSTPSVLPSAAEMKLIVECSGGAWREGGRNWVCVTSAADRHLWPELRTRGATLVSTEFILEGVLRQSVNIAGTSITVNG

Uniprot

H9JFT9

Pubmed

19121390

EMBL

BABH01001613 BABH01001614

Proteomes

UP000005204

PRIDE

H9JFT9

Pfam

PF00498 FHA + More
PF16770 RTT107_BRCT_5

Interpro

IPR000253   FHA_dom        + More
IPR001357   BRCT_dom
IPR036420   BRCT_dom_sf
IPR008984   SMAD_FHA_dom_sf

SUPFAM

SSF52113 SSF52113 + More
SSF49879 SSF49879

Gene 3D

3.40.50.10190

CDD

cd00027 BRCT
cd00060 FHA

ProteinModelPortal

H9JFT9

PDB

3SQD E-value=6.52504e-18, Score=227

KEGG

101735968 K20780 mediator of DNA damage checkpoint protein 1 | (RefSeq) uncharacterized LOC101735968

GO

GO:0005515 GO:0019673 GO:0005634 GO:0008270 GO:0005785 GO:0006886 GO:0006810 GO:0016614 GO:0005506 GO:0003824

Length:

1212

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00177

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00002

outside

1 - 1212

Pi

258.312825

Theta

198.06261

Tajima's D

0.81461

CLR

0.255903

CSRT

0.608219589020549

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics