Gene

KWMTBOMO10792  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008433

Annotation

PREDICTED:_GDP-mannose_4?6_dehydratase_[Papilio_machaon]

Location

Bomo_Chr18(+):3007718-3016532      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.362

CDS

ATGTCCGGAGATAGTTCTAATGTAATCGATCCGAAAAAAATTGCCTTAATAACTGGAATAACTGGCCAGGATGGTTCATACTTAGCAGAATTTCTCATAGACAAAGGCTATGAAGTTCACGGGATCCTTCGTCGATCCTCGTCATTCAACACTGGCCGCATCCAACACTTGTATGGACAACCCGCGTGTCACACGGGTGGTAAAATGCACCTACATTACGGAGATTTGAGTGACACGTCATGTCTTATTAGCATCATAGCAAAGACTCGGCCCAAAGAGATATACAATCTAGGGGCCCAATCTCATGTAAAAGTATCATTTGAATTAAGCGAATACACAGCACAAGTAGACGCTCTTGGTACTTTGAGGCTCTTAGAAGCGGTCAGAGCTGCCGGCCTTGAAAAAGATACTAAAATATACCAGGCTTCTACATCCGAGCTCTATGGAAAAGCTGTAGAAGTACCACAGAATGAGAAAACTCCTTTTTATCCTAGGTCCCCTTATGCTTGCGCTAAACTGTACGCGTATTGGATAGTTGTGAACTACAGAGAGGCGTATCAAATGTTCGCCTGTAACGGACTACTGTTCAACCACGAGAGTCCACGGCGTGGCGAGAACTTCGTCACGAGGAAGATAACGAGAGGTGTCGCCAAAATTACCCTAGGCCTCATGCCTTATTTGGAGTTAGGGAACTTGGATAGCAAAAGAGATTGGGGGCACGCCAAGGATTACGTCGAGGCTATGTGGTTGATGCTCCAACAAGACGAGCCCGAGGACTTCGTGGTGGCGACGGGGGAAACGCACAGCGTCCGCGAGTTCGTCGAGAAGTCGTTCGCGTGCGTGGGGCGCTGCGTGGCGTGGCGCGGCGCCGGCGTGCACGAGACCGGACACGACGCGCACACGGAACAACTACTCGTCAAAGTCAACCCTAAGTATTTCCGCCCCACCGAAGTGGACTTATTACTAGGCGATCCAAGCAAGGCGAAACAGAAGTTAGGATGGGCCCCCAAAGTTAGCTTCGACCAACTAGTCAAGGATATGGTAGAAGCGGATCTAGAATTGATGAAAAAGACACCAGAAGCGTAG

Protein

MSGDSSNVIDPKKIALITGITGQDGSYLAEFLIDKGYEVHGILRRSSSFNTGRIQHLYGQPACHTGGKMHLHYGDLSDTSCLISIIAKTRPKEIYNLGAQSHVKVSFELSEYTAQVDALGTLRLLEAVRAAGLEKDTKIYQASTSELYGKAVEVPQNEKTPFYPRSPYACAKLYAYWIVVNYREAYQMFACNGLLFNHESPRRGENFVTRKITRGVAKITLGLMPYLELGNLDSKRDWGHAKDYVEAMWLMLQQDEPEDFVVATGETHSVREFVEKSFACVGRCVAWRGAGVHETGHDAHTEQLLVKVNPKYFRPTEVDLLLGDPSKAKQKLGWAPKVSFDQLVKDMVEADLELMKKTPEA

Uniprot

H9JFY6   A0A2A4JHR4   A0A2H1VFM2   A0A0N1PGD2   A0A194PIK5   A0A3S2N6L0   + More
A0A2M4BQW9   A0A2M4AUW5   A0A2M4BSG9   A0A182WI54   A0A182JD96   A0A2P8Z8W5   W5J8V3   A0A182R9B9   A0A182MET6   A0A084WMZ5   A0A182PEW7   A0A154P0Z9   A0A182S9W0   A0A182JVW8   A0A3L8D6W4   A0A0L7QWV5   A0A182VGE9   A0A182YJH0   A0A0M8ZTN9   A0A182X253   A0A182L430   Q7QIC7   A0A182I6B4   A0A0J7NTY4   A0A232EW10   K7J674   A0A195AUC8   A0A158P0S2   A0A182TQK1   A0A151JD14   A0A195CXH5   A0A182N7I0   F4WUY3   A0A226F0R7   A0A151WWL8   A0A182H5B7   A0A195FYV5   A0A1B6HPA9   A0A1Y1K417   A0A182PZV1   Q16EZ3   A0A088A9V8   A0A1Q3FBH2   A0A1S4G3C4   A0A2A3EP83   E2BXA8   A0A1L8E236   A0A1L8E1Q6   B4LUA8   A0A1B6G5F5   B0X0N4   A0A069DYR3   A0A0A9VZI0   E0VW54   A0A336K246   A0A0P4W3E1   J9JWM6   A0A1J1J6J5   A0A310SJ30   A0A1B0CN14   B4KGX6   A0A2M4AVP8   A0A2H8TX94   E9J2C2   A0A120MH80   A0A026WSU7   A0A2S2NY04   A0A0A1WSA1   A0A1A9WW96   A0A0P4XZ90   A0A1W4UWZ9   D6WIJ1   A0A1B6MM78   A0A0L0BVC1   A0A1D2NAJ3   A0A3B0JM65   A0A0P5WA10   B4N0K7   E9HEX6   B3MVL9   A0A034VQ20   A0A0P5V264   Q29L17   B4GSH4   U5EH43   A0A0P5Q9D6   A0A1I8N219   A0A0K8VCV0   A0A1I8P353   W8BUE1   A0A0T6AW44   A0A3G5AQP2   A0A0N7ZID5   A0A1V9Y171  

Pubmed

19121390    26354079    29403074    20920257    23761445    24438588    + More
30249741    25244985    20966253    12364791    14747013    17210077    28648823    20075255    21347285    21719571    26483478    28004739    17510324    20798317    17994087    26334808    25401762    26823975    20566863    27129103    21282665    24508170    25830018    18362917    19820115    26108605    27289101    21292972    25348373    15632085    25315136    24495485    28327890   

EMBL

BABH01001612    NWSH01001369    PCG71511.1    ODYU01002318    SOQ39660.1    KQ460556    + More
KPJ14010.1    KQ459606    KPI90920.1    RSAL01000298    RVE42800.1    GGFJ01006346    MBW55487.1    GGFK01011252    MBW44573.1    GGFJ01006884    MBW56025.1    PYGN01000143    PSN52941.1    ADMH02001849    ETN60887.1    AXCM01015948    ATLV01024541    KE525352    KFB51589.1    KQ434783    KZC04810.1    QOIP01000012    RLU15598.1    KQ414705    KOC63108.1    KQ435891    KOX69413.1    AAAB01008807    EAA04772.3    APCN01003602    LBMM01001700    KMQ95875.1    NNAY01001926    OXU22539.1    KQ976738    KYM75662.1    ADTU01005773    KQ979038    KYN23483.1    KQ977141    KYN05365.1    GL888378    EGI61997.1    LNIX01000001    OXA63014.1    KQ982691    KYQ52055.1    JXUM01111221    KQ565482    KXJ70921.1    KQ981200    KYN45009.1    GECU01031271    JAS76435.1    GEZM01095974    JAV55231.1    AXCN02000573    CH478542    EAT32804.1    GFDL01010124    JAV24921.1    KZ288212    PBC32841.1    GL451230    EFN79691.1    GFDF01001442    JAV12642.1    GFDF01001443    JAV12641.1    CH940649    EDW64095.2    GECZ01021506    GECZ01012100    JAS48263.1    JAS57669.1    DS233065    DS232242    EDS27832.1    EDS38276.1    GBGD01001940    JAC86949.1    GBHO01042027    GDHC01018504    JAG01577.1    JAQ00125.1    DS235817    EEB17610.1    UFQS01000078    UFQT01000078    SSW99044.1    SSX19426.1    GDKW01000628    JAI55967.1    ABLF02028824    CVRI01000067    CRL06505.1    KQ767283    OAD53442.1    AJWK01019616    CH933807    EDW11176.1    GGFK01011377    MBW44698.1    GFXV01007072    MBW18877.1    GL767845    EFZ13005.1    KT768113    KT768116    AMH84308.1    AMH84311.1    KK107131    EZA58159.1    GGMR01009333    MBY21952.1    GBXI01014815    GBXI01012922    JAC99476.1    JAD01370.1    GDIP01234797    GDIQ01103054    GDIP01107756    GDIP01052914    JAI88604.1    JAL48672.1    KQ971334    EFA01082.1    GEBQ01003002    JAT36975.1    JRES01001399    KNC23184.1    LJIJ01000118    ODN02270.1    OUUW01000006    SPP81943.1    GDIP01102308    JAM01407.1    CH963920    EDW77620.1    GL732632    EFX69674.1    CH902624    EDV33284.1    GAKP01013551    JAC45401.1    GDIP01105155    JAL98559.1    CH379061    EAL33007.2    CH479189    EDW25333.1    GANO01003193    JAB56678.1    GDIQ01120399    JAL31327.1    GDHF01015618    JAI36696.1    GAMC01001615    JAC04941.1    LJIG01022663    KRT79372.1    MH990540    AYV89087.1    GDIP01242457    JAI80944.1    MNPL01001075    OQR79486.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000283053    UP000075920    + More
UP000075880    UP000245037    UP000000673    UP000075900    UP000075883    UP000030765    UP000075885    UP000076502    UP000075901    UP000075881    UP000279307    UP000053825    UP000075903    UP000076408    UP000053105    UP000076407    UP000075882    UP000007062    UP000075840    UP000036403    UP000215335    UP000002358    UP000078540    UP000005205    UP000075902    UP000078492    UP000078542    UP000075884    UP000007755    UP000198287    UP000075809    UP000069940    UP000249989    UP000078541    UP000075886    UP000008820    UP000005203    UP000242457    UP000008237    UP000008792    UP000002320    UP000009046    UP000007819    UP000183832    UP000092461    UP000009192    UP000053097    UP000091820    UP000192221    UP000007266    UP000037069    UP000094527    UP000268350    UP000007798    UP000000305    UP000007801    UP000001819    UP000008744    UP000095301    UP000095300    UP000192247   

PRIDE

H9JFY6   

Pfam

PF16363   GDP_Man_Dehyd

Interpro

IPR036291   NAD(P)-bd_dom_sf        + More
IPR016040   NAD(P)-bd_dom       
IPR006368   GDP_Man_deHydtase       

SUPFAM

SSF51735   SSF51735       

ProteinModelPortal

H9JFY6   A0A2A4JHR4   A0A2H1VFM2   A0A0N1PGD2   A0A194PIK5   A0A3S2N6L0   + More
A0A2M4BQW9   A0A2M4AUW5   A0A2M4BSG9   A0A182WI54   A0A182JD96   A0A2P8Z8W5   W5J8V3   A0A182R9B9   A0A182MET6   A0A084WMZ5   A0A182PEW7   A0A154P0Z9   A0A182S9W0   A0A182JVW8   A0A3L8D6W4   A0A0L7QWV5   A0A182VGE9   A0A182YJH0   A0A0M8ZTN9   A0A182X253   A0A182L430   Q7QIC7   A0A182I6B4   A0A0J7NTY4   A0A232EW10   K7J674   A0A195AUC8   A0A158P0S2   A0A182TQK1   A0A151JD14   A0A195CXH5   A0A182N7I0   F4WUY3   A0A226F0R7   A0A151WWL8   A0A182H5B7   A0A195FYV5   A0A1B6HPA9   A0A1Y1K417   A0A182PZV1   Q16EZ3   A0A088A9V8   A0A1Q3FBH2   A0A1S4G3C4   A0A2A3EP83   E2BXA8   A0A1L8E236   A0A1L8E1Q6   B4LUA8   A0A1B6G5F5   B0X0N4   A0A069DYR3   A0A0A9VZI0   E0VW54   A0A336K246   A0A0P4W3E1   J9JWM6   A0A1J1J6J5   A0A310SJ30   A0A1B0CN14   B4KGX6   A0A2M4AVP8   A0A2H8TX94   E9J2C2   A0A120MH80   A0A026WSU7   A0A2S2NY04   A0A0A1WSA1   A0A1A9WW96   A0A0P4XZ90   A0A1W4UWZ9   D6WIJ1   A0A1B6MM78   A0A0L0BVC1   A0A1D2NAJ3   A0A3B0JM65   A0A0P5WA10   B4N0K7   E9HEX6   B3MVL9   A0A034VQ20   A0A0P5V264   Q29L17   B4GSH4   U5EH43   A0A0P5Q9D6   A0A1I8N219   A0A0K8VCV0   A0A1I8P353   W8BUE1   A0A0T6AW44   A0A3G5AQP2   A0A0N7ZID5   A0A1V9Y171  

PDB

6GPL     E-value=3.79291e-150,     Score=1362

KEGG

101735837    K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47] | (RefSeq) GDP-mannose 4,6 dehydratase

PATHWAY

00051    Fructose and mannose metabolism - Bombyx mori (domestic silkworm)
00520    Amino sugar and nucleotide sugar metabolism - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0008446   GO:0019673   GO:0042351   GO:0005737   GO:0016021   GO:0048477   GO:0045747   GO:2000035   GO:0005634   GO:0008270   GO:0005785   GO:0006886   GO:0006810   GO:0016614   GO:0005506   GO:0003824  

Length:

361

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01822

Exp number, first 60 AAs:

0.0044

Total prob of N-in:

0.01099

outside

1  -  361

 

 

Pi

180.732072

Theta

145.933241

Tajima's D

0.837702

CLR

0.023559

CSRT

0.613719314034298

Interpretation

Uncertain