Gene

KWMTBOMO10790

Pre Gene Modal

BGIBMGA008432

Annotation

PREDICTED:_tubulin_polyglutamylase_TTLL6_[Bombyx_mori]

Location

Bomo_Chr18(+):2988778-3005005      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.275 Mitochondrial   Reliability : 1.023

CDS

ATGGCCGTGCTAATGAGGAGGATGATAAACTCGGAAAATATAAACGATAAATACGTAGAGCGCGCCATCAAGAAACGTTATTGGGTTTATTCTGCTCAGAATGACGTCAACAATCCTGACGGTTTGTTAAAGCACGTGCATCGCGTCCTAAAACGAATCGGTTACGAAAAAACCACGAACGAATCCGATTGGAACTTGCTATGGTCCCACGATTATCCTTTTCGAGTACTGTACCCTAATTTACACAGTTTAAAACCAAATCAGAAAGTCAACCACTACCCCGGAGCGGGTTTCGTTACGAACAAAGTAGACCTTGCCACGACTGAATCGAAATACATCCCGAAGGCGTTCAAACTGCCACAGAATAAAGAAGATTTTTTAAAATACGCCGCTGAGAACGAAGGCGCCTTGTTTTTGGAAAAGCACAATCAACACAGAGGTGTTTACTTAAAAAACGTGAGCGAAATAAATCTGGCTGGCGGGGAAAGTTTCGTACAAGAATACGTGCAAAGACCGTTCTTAGTCGACGGACACAAGTTTGATATTGGCGTGTACGTAGTTCTAACCTCGGTTAACCCCTTGAGAGCATATTGGTACAAAGGAGATGTCCTCTTCAGGTACTGTCCGGCAAAGTATTATCCTTTCGATCCAAAGGATTTGGATAAATATGTCATTAGGGACGACTACCTCCCTACCTGGGAGGTACCTTCGCTGTCGCATCCTTACACTGCCCTTGGGTTTAGCATGAGAGATGCTTTCGACATTTACGCTAAAACAAAGGGGAAAGACCCTACACAGATGTGGAGGGAAATACAAAACGCTATAGCTGAGTTATTTGTGAAAAAAGAGCATCATATTGTCGAAACTTTGAAATCGTATCCGTCAACAGAAAACTTCTTCGAACTAATGCGTTTTGATCTGGTCGTCGATGAAGATCTAAAAGTGTATTTGTTAGAAGCCAACATGTCGCCCAACTTGTCGTCTGCTCACTACCCTCCCAACCAGCTGTTGTACGAGCAGGTTCTGTACAACTTGTTCGGACTGGTTGGCATAGCTGATCATATCCAGGAGAATAGTCTTGGAGATTCAGCTGCTCAGAACATGGTGTCTTCACAGAAAAACATAGCCGTATGGGGCGAAATATGCACGACGACTTGTAGAGATAATTGTCACATGAATCTAATATGTGAACTCTGTCGTCCCTGTCTGAGCGCAAGGTTGCGAAGCGTCTTCCTTAAGGCCCATAAGGAGTTTCTTCATAAGGGAGACTTTAGGAGGTTGTTCCCACCGCCTATGAAAGCCAATGCTACTTTAAAAGAAGAGGACTTGAAGCACTTGAACAAACCAAACAGACTTCAGTACTTATGGTACCAGGGAAAATGCAATGTGGATATCACTTGGTGTACATAA

Protein

MAVLMRRMINSENINDKYVERAIKKRYWVYSAQNDVNNPDGLLKHVHRVLKRIGYEKTTNESDWNLLWSHDYPFRVLYPNLHSLKPNQKVNHYPGAGFVTNKVDLATTESKYIPKAFKLPQNKEDFLKYAAENEGALFLEKHNQHRGVYLKNVSEINLAGGESFVQEYVQRPFLVDGHKFDIGVYVVLTSVNPLRAYWYKGDVLFRYCPAKYYPFDPKDLDKYVIRDDYLPTWEVPSLSHPYTALGFSMRDAFDIYAKTKGKDPTQMWREIQNAIAELFVKKEHHIVETLKSYPSTENFFELMRFDLVVDEDLKVYLLEANMSPNLSSAHYPPNQLLYEQVLYNLFGLVGIADHIQENSLGDSAAQNMVSSQKNIAVWGEICTTTCRDNCHMNLICELCRPCLSARLRSVFLKAHKEFLHKGDFRRLFPPPMKANATLKEEDLKHLNKPNRLQYLWYQGKCNVDITWCT

Uniprot

H9JFY5   A0A3S2P685   A0A212FC66   A0A0N1I7L8   A0A2H1VFN9   A0A2A4JIW4   + More
A0A194PCJ8   A0A154PHL4   K7IQF8   A0A232EXE1   D6WP53   A0A0J7KMT0   A0A151X5I6   A0A195DIB9   A0A2A3EBJ2   A0A158NRI8   A0A195BE45   A0A195FU15   E2BD39   A0A0L7QM28   N6U974   A0A026W7A3   U4UR99   F4WBM3   W5JWA9   A0A182Y903   A0A182QX78   A0A084WPB6   B0WNF8   A0A182MM81   B3M295   A0A2J7Q368   A0A182GQF0   A0A182J0Q7   A0A182UE80   A0A2J7Q374   Q17H42   A0A182NCV4   A0A182V661   A0A182XF72   A0A1S4F2V9   A0NDN6   A0A182PLH6   A0A336L223   A0A182RI20   A0A087ZT70   A0A182FAF8   A0A182KZS5   A0A182HVP3   A0A182JQ72   A0A1W4VVN6   A0A0M9A4F4   A0A1B0CSE5   A0A1W4VWD6   A0A0M4F7A0   Q9VGW2   A0A067R1T6   A0A1I8MP31   D3TNX0   B3P1J6   A0A0L7LBM6   A0A0L0BNE0   A0A1A9ZK50   B4PLD8   A0A1B0BPA5   A0A1A9XSQ2   B4JHM0   C3XS25   B4GDZ8   A0A1A9UX29   A0A182W389   B4NJY7   A0A0P4WA57   A0A1S3J7I1   A0A1S3I8R5   A0A3B0K5C1   A0A1J1IMD4   B4HIP6   R7VCQ4   B4KC94   C3XS26   A0A151I766   A0A1D2NHW0   E9J8N3   W8B330   E9G6D5   A0A0P6EXC0   A0A0P5PYW8   A0A0N8BT97   A0A1I8PNT0   A0A0P6CFP9   A0A0A9X8G8   A0A2S2N7P3   A0A164UR34   B4M5I6   V4CKY4   A0A0P6HCP9   A0A1B0DDN9   A0A0P5C3Z2   A0A0P4YDF3  

Pubmed

19121390    22118469    26354079    20075255    28648823    18362917    + More
19820115    21347285    20798317    23537049    24508170    30249741    21719571    20920257    23761445    25244985    24438588    17994087    26483478    17510324    12364791    14747013    17210077    20966253    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24845553    25315136    20353571    26227816    26108605    17550304    18563158    26383154    23254933    27289101    21282665    24495485    21292972    25401762   

EMBL

BABH01001609    BABH01001610    BABH01001611    BABH01001612    RSAL01000298    RVE42799.1    + More
AGBW02009218    OWR51325.1    KQ460556    KPJ14008.1    ODYU01002318    SOQ39658.1    NWSH01001369    PCG71514.1    KQ459606    KPI90922.1    KQ434905    KZC11297.1    NNAY01001737    OXU23076.1    KQ971352    EFA07282.1    LBMM01005228    KMQ91688.1    KQ982498    KYQ55675.1    KQ980824    KYN12633.1    KZ288292    PBC29088.1    ADTU01024048    KQ976511    KYM82440.1    KQ981280    KYN43379.1    GL447563    EFN86381.1    KQ414894    KOC59698.1    APGK01035293    KB740923    ENN78250.1    KK107364    QOIP01000007    EZA51935.1    RLU20371.1    KB632333    ERL92681.1    GL888066    EGI68301.1    ADMH02000180    ETN67465.1    AXCN02001207    ATLV01025016    KE525367    KFB52060.1    DS232010    EDS31612.1    AXCM01001830    CH902617    EDV42286.1    NEVH01019069    PNF23035.1    JXUM01080395    KQ563183    KXJ74316.1    PNF23038.1    CH477253    EAT45971.1    AAAB01008898    EAU76857.3    UFQS01001681    UFQT01001681    SSX11840.1    SSX31404.1    APCN01005809    KQ435736    KOX77017.1    AJWK01025954    CP012526    ALC47707.1    AE014297    AY061104    AAF54561.1    AAL28652.1    KK853091    KDR11546.1    CCAG010019253    EZ423122    ADD19398.1    CH954181    EDV49595.1    JTDY01001817    KOB72800.1    JRES01001605    KNC21547.1    CM000160    EDW96845.1    JXJN01017876    CH916369    EDV93859.1    GG666456    EEN69493.1    CH479182    EDW33833.1    CH964272    EDW83989.1    GDRN01059911    JAI65461.1    OUUW01000007    SPP83210.1    CVRI01000054    CRL00246.1    CH480815    EDW42693.1    AMQN01004320    KB293181    ELU16337.1    CH933806    EDW13703.2    EEN69494.1    KQ978430    KYM94012.1    LJIJ01000035    ODN04837.1    GL769036    EFZ10825.1    GAMC01015119    GAMC01015117    JAB91438.1    GL732533    EFX84915.1    GDIQ01069215    JAN25522.1    GDIQ01121528    JAL30198.1    GDIQ01147083    JAL04643.1    GDIP01094852    GDIP01015972    JAM87743.1    GBHO01027320    JAG16284.1    GGMR01000479    MBY13098.1    LRGB01001579    KZS11596.1    CH940652    EDW58912.2    KB200129    ESP02910.1    GDIQ01021336    JAN73401.1    AJVK01032116    GDIP01176450    GDIP01094853    JAJ46952.1    GDIP01231790    JAI91611.1   

Proteomes

UP000005204    UP000283053    UP000007151    UP000053240    UP000218220    UP000053268    + More
UP000076502    UP000002358    UP000215335    UP000007266    UP000036403    UP000075809    UP000078492    UP000242457    UP000005205    UP000078540    UP000078541    UP000008237    UP000053825    UP000019118    UP000053097    UP000279307    UP000030742    UP000007755    UP000000673    UP000076408    UP000075886    UP000030765    UP000002320    UP000075883    UP000007801    UP000235965    UP000069940    UP000249989    UP000075880    UP000075902    UP000008820    UP000075884    UP000075903    UP000076407    UP000007062    UP000075885    UP000075900    UP000005203    UP000069272    UP000075882    UP000075840    UP000075881    UP000192221    UP000053105    UP000092461    UP000092553    UP000000803    UP000027135    UP000095301    UP000092444    UP000008711    UP000037510    UP000037069    UP000092445    UP000002282    UP000092460    UP000092443    UP000001070    UP000001554    UP000008744    UP000078200    UP000075920    UP000007798    UP000085678    UP000268350    UP000183832    UP000001292    UP000014760    UP000009192    UP000078542    UP000094527    UP000000305    UP000095300    UP000076858    UP000008792    UP000030746    UP000092462   

PRIDE

H9JFY5    Q9VGW2   

Pfam

PF03133   TTL        + More
PF14304   CSTF_C
PF00076   RRM_1
PF14327   CSTF2_hinge

Interpro

IPR004344   TTL/TTLL_fam        + More
IPR013815   ATP_grasp_subdomain_1       
IPR026896   CSTF_C       
IPR038192   CSTF2_C_sf       
IPR035979   RBD_domain_sf       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR025742   CSTF2_hinge       

SUPFAM

SSF54928   SSF54928       

Gene 3D

3.30.1490.20     1.10.20.70     3.30.70.330    

ProteinModelPortal

H9JFY5   A0A3S2P685   A0A212FC66   A0A0N1I7L8   A0A2H1VFN9   A0A2A4JIW4   + More
A0A194PCJ8   A0A154PHL4   K7IQF8   A0A232EXE1   D6WP53   A0A0J7KMT0   A0A151X5I6   A0A195DIB9   A0A2A3EBJ2   A0A158NRI8   A0A195BE45   A0A195FU15   E2BD39   A0A0L7QM28   N6U974   A0A026W7A3   U4UR99   F4WBM3   W5JWA9   A0A182Y903   A0A182QX78   A0A084WPB6   B0WNF8   A0A182MM81   B3M295   A0A2J7Q368   A0A182GQF0   A0A182J0Q7   A0A182UE80   A0A2J7Q374   Q17H42   A0A182NCV4   A0A182V661   A0A182XF72   A0A1S4F2V9   A0NDN6   A0A182PLH6   A0A336L223   A0A182RI20   A0A087ZT70   A0A182FAF8   A0A182KZS5   A0A182HVP3   A0A182JQ72   A0A1W4VVN6   A0A0M9A4F4   A0A1B0CSE5   A0A1W4VWD6   A0A0M4F7A0   Q9VGW2   A0A067R1T6   A0A1I8MP31   D3TNX0   B3P1J6   A0A0L7LBM6   A0A0L0BNE0   A0A1A9ZK50   B4PLD8   A0A1B0BPA5   A0A1A9XSQ2   B4JHM0   C3XS25   B4GDZ8   A0A1A9UX29   A0A182W389   B4NJY7   A0A0P4WA57   A0A1S3J7I1   A0A1S3I8R5   A0A3B0K5C1   A0A1J1IMD4   B4HIP6   R7VCQ4   B4KC94   C3XS26   A0A151I766   A0A1D2NHW0   E9J8N3   W8B330   E9G6D5   A0A0P6EXC0   A0A0P5PYW8   A0A0N8BT97   A0A1I8PNT0   A0A0P6CFP9   A0A0A9X8G8   A0A2S2N7P3   A0A164UR34   B4M5I6   V4CKY4   A0A0P6HCP9   A0A1B0DDN9   A0A0P5C3Z2   A0A0P4YDF3  

PDB

4YLS     E-value=4.9137e-20,     Score=241

KEGG

101735698    K16610 tubulin monoglycylase TTLL15 | (RefSeq) tubulin polyglutamylase TTLL6

GO

GO:0006464   GO:0016021   GO:0005524   GO:0070735   GO:0018094   GO:0016874   GO:0031124   GO:0003723   GO:0003676   GO:0005634   GO:0008270   GO:0005785   GO:0006886   GO:0006810   GO:0016614   GO:0005506   GO:0003824  

Length:

469

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0386300000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00886

outside

1  -  469

 

 

Pi

208.394604

Theta

167.588672

Tajima's D

0.552403

CLR

32.96708

CSRT

0.527073646317684

Interpretation

Uncertain