Gene

KWMTBOMO10781

Pre Gene Modal

BGIBMGA008427

Annotation

PREDICTED:_nuclear_nucleic_acid-binding_protein_C1D-like_[Amyelois_transitella]

Location

Bomo_Chr18(+):2868930-2869652      View in EpiBrowser

Full name

Nuclear nucleic acid-binding protein C1D      

Location in the cell

Mitochondrial   Reliability : 1.512 Nuclear   Reliability : 2.12

CDS

ATGTGCCAAGAACTTAATTGGGACTTTAAATACGGCGAACTCGCCAAAGACAAAGATTTCGTGAACAATGTTGAAAATTTGAAAGAGAATTTAATAGAAGTACAACAAGTACTCGATAAACTCCTTCCGTTGAAGAAAAATTACGACAAAATGTCACTACCAGCTCAGATTGAACTAGATTTGTTTTTTGTATACACTTTAAATTCACTACATTGGATACATTTACGAACAAAAGGCATCGATCCCACAAAACATCCCATCAAAGATGAACTGCTCAGAATAAAAGCTACAATGTTAAAGTGGCAGGAAGTGAAGGATCGCCAGAAAAGACCCACCGTTAACGTTGAAGTGGCGAAACGTTTAGTACGGAATGGTCTGTACGACCATCAGAGGGCTCCCGTGAAACAACTAAACAAACGAATAAAATTTTCAGATAACGAAGAGTAA

Protein

MCQELNWDFKYGELAKDKDFVNNVENLKENLIEVQQVLDKLLPLKKNYDKMSLPAQIELDLFFVYTLNSLHWIHLRTKGIDPTKHPIKDELLRIKATMLKWQEVKDRQKRPTVNVEVAKRLVRNGLYDHQRAPVKQLNKRIKFSDNEE

Description

Plays a role in the recruitment of the exosome to pre-rRNA to mediate the 3'-5' end processing of the 5.8S rRNA.

Subunit

Monomer and homodimer.

Similarity

Belongs to the C1D family.

Keywords

Coiled coil   Cytoplasm   DNA-binding   Exosome   Nucleus   RNA-binding   rRNA processing   Complete proteome   Reference proteome  

Feature

chain  Nuclear nucleic acid-binding protein C1D

Uniprot

H9JFY0   A0A2A4J4F8   A0A3S2LRD3   A0A1E1W4P0   A0A2H1VZ27   A0A0L7LJ51   + More
A0A212ETP3   S4P8H6   A0A0N1IG38   A0A194PIL3   A0A023EH30   Q17GP9   A0A1Q3FCB8   B0XJI0   A0A0A9WDV8   A0A1L8DCD1   U5EN26   T1GS34   A0A1J1IDS1   D6WVJ5   A0A023EZ69   A0A161N176   A0A2J7QAZ1   T1I8V0   A0A2P8Y2H6   E0VG57   J3JV10   A0A1I8PLW8   A0A0P4VRG2   A0A224XLE5   A0A1B0D5Z2   K7J7U0   A0A1L8EC75   W8BR41   A0A1I8MEV9   A0A2R7VWM3   A0A067QSL4   A0A069DPF0   A0A067QT38   A0A1W4X785   C4WVB2   A0A154PCB6   A0A0A1XME6   A0A2S2NL90   A0A0K8V1N3   G3PE26   A0A026W7E7   A0A2A3E8F0   A0A1B6EKY4   A0A034WXW0   A0A0C9QEM9   A0A3P8UC68   A0A336LJI0   A0A3Q3B7H8   A0A088ABI5   A0A0L0CGD4   A0A0N0U307   A0A1B6LSD0   A0A3Q2FHJ9   C1C2U7   A0A1B0A3F1   A0A3Q2GBJ3   A0A0K8TMF7   A0A091RSK6   A0A2I0M982   A0A1A9YDF9   A0A1B0B009   C1C0D4   A0A2I0M985   A0A3B1K3D5   A0A2H8TU46   A0A1A8ECM6   A0A1L8G708   Q3KPR1   A0A1V4IG26   A0A3B4A2J3   A0A3P8UEL5   A0A1A8K4X6   A0A3B3IN79   A0A091M8P8   A0A091HF74   A0A3B5M4G4   A0A1A8QL70   A0A1A8HRK2   A0A093GLT7   A0A2S2R679   F1QNQ8   A0A1A8VDV5   A0A3P9IWE8   Q5XJ97  

Pubmed

19121390    26227816    22118469    23622113    26354079    24945155    + More
26483478    17510324    25401762    26823975    18362917    19820115    25474469    29403074    20566863    22516182    23537049    27129103    20075255    24495485    25315136    24845553    26334808    25830018    24508170    30249741    25348373    24487278    26108605    26369729    23371554    25329095    27762356    25463417    17554307    23594743   

EMBL

BABH01001598    NWSH01003288    PCG66616.1    RSAL01000298    RVE42795.1    GDQN01009124    + More
JAT81930.1    ODYU01005346    SOQ46095.1    JTDY01000907    KOB75477.1    AGBW02012556    OWR44837.1    GAIX01005926    JAA86634.1    KQ460556    KPJ14000.1    KQ459606    KPI90930.1    JXUM01057087    GAPW01005464    KQ561939    JAC08134.1    KXJ77104.1    CH477257    EAT45817.1    GFDL01009821    JAV25224.1    DS233521    EDS30383.1    GBHO01037623    GBHO01037620    GBHO01037618    GBHO01018799    GBHO01018798    GBRD01002861    GDHC01013226    GDHC01012111    JAG05981.1    JAG05984.1    JAG05986.1    JAG24805.1    JAG24806.1    JAG62960.1    JAQ05403.1    JAQ06518.1    GFDF01010057    JAV04027.1    GANO01000756    JAB59115.1    CAQQ02178077    CVRI01000044    CRK96593.1    KQ971357    EFA08579.1    GBBI01004200    JAC14512.1    GEMB01002371    JAS00812.1    NEVH01016304    PNF25768.1    ACPB03000011    PYGN01001014    PSN38468.1    DS235131    EEB12363.1    APGK01026888    BT127075    KB740648    KB630779    KB631357    AEE62037.1    ENN79721.1    ERL83865.1    ERL84254.1    GDKW01002967    JAI53628.1    GFTR01003139    JAW13287.1    AJVK01003541    AJVK01003542    GFDG01002449    JAV16350.1    GAMC01002790    JAC03766.1    KK854135    PTY11907.1    KK852984    KDR12859.1    GBGD01003392    JAC85497.1    KDR12860.1    ABLF02015467    ABLF02015468    AK341439    BAH71832.1    KQ434870    KZC09471.1    GBXI01002160    JAD12132.1    GGMR01005093    MBY17712.1    GDHF01025690    GDHF01022826    GDHF01019578    JAI26624.1    JAI29488.1    JAI32736.1    KK107356    QOIP01000010    EZA52027.1    RLU17432.1    KZ288347    PBC27552.1    GECZ01031208    JAS38561.1    GAKP01000329    JAC58623.1    GBYB01012958    JAG82725.1    UFQT01000027    SSX18162.1    JRES01000417    KNC31453.1    KQ435955    KOX68058.1    GEBQ01013375    JAT26602.1    BT081176    ACO15600.1    GDAI01002051    JAI15552.1    KK707790    KFQ31447.1    AKCR02000027    PKK26242.1    JXJN01006514    BT080313    ACO14737.1    PKK26240.1    PKK26241.1    GFXV01005922    MBW17727.1    HAEA01015198    SBQ43678.1    CM004474    OCT79678.1    BC106601    LSYS01009753    OPJ58810.1    HAEE01007246    SBR27266.1    KL321027    KFP54876.1    KL535088    KFO94119.1    HAEH01012150    SBR94063.1    HAED01000872    HAEE01010888    SBQ86717.1    KL216062    KFV67967.1    GGMS01015659    MBY84862.1    CABZ01017629    HAEJ01017589    SBS58046.1    BC083407   

Proteomes

UP000005204    UP000218220    UP000283053    UP000037510    UP000007151    UP000053240    + More
UP000053268    UP000069940    UP000249989    UP000008820    UP000002320    UP000015102    UP000183832    UP000007266    UP000235965    UP000015103    UP000245037    UP000009046    UP000019118    UP000030742    UP000095300    UP000092462    UP000002358    UP000095301    UP000027135    UP000192223    UP000007819    UP000076502    UP000007635    UP000053097    UP000279307    UP000242457    UP000265120    UP000264800    UP000005203    UP000037069    UP000053105    UP000265020    UP000092445    UP000053872    UP000092443    UP000092460    UP000018467    UP000186698    UP000190648    UP000261520    UP000001038    UP000261380    UP000053875    UP000000437    UP000265200   

PRIDE

H9JFY0   

Pfam

PF04000   Sas10_Utp3        + More
PF14306   PUA_2
PF01747   ATP-sulfurylase

Interpro

IPR007146   Sas10/Utp3/C1D        + More
IPR011082   Exosome-assoc_fac/DNA_repair       
IPR014729   Rossmann-like_a/b/a_fold       
IPR015947   PUA-like_sf       
IPR024951   Sulfurylase_cat_dom       
IPR027417   P-loop_NTPase       
IPR002891   APS_kinase       
IPR002650   Sulphate_adenylyltransferase       
IPR025980   ATP-Sase_PUA-like_dom       

SUPFAM

SSF52540   SSF52540        + More
SSF88697   SSF88697       

Gene 3D

3.40.50.620    

CDD

cd00517  ATPS
cd02027  APSK

ProteinModelPortal

H9JFY0   A0A2A4J4F8   A0A3S2LRD3   A0A1E1W4P0   A0A2H1VZ27   A0A0L7LJ51   + More
A0A212ETP3   S4P8H6   A0A0N1IG38   A0A194PIL3   A0A023EH30   Q17GP9   A0A1Q3FCB8   B0XJI0   A0A0A9WDV8   A0A1L8DCD1   U5EN26   T1GS34   A0A1J1IDS1   D6WVJ5   A0A023EZ69   A0A161N176   A0A2J7QAZ1   T1I8V0   A0A2P8Y2H6   E0VG57   J3JV10   A0A1I8PLW8   A0A0P4VRG2   A0A224XLE5   A0A1B0D5Z2   K7J7U0   A0A1L8EC75   W8BR41   A0A1I8MEV9   A0A2R7VWM3   A0A067QSL4   A0A069DPF0   A0A067QT38   A0A1W4X785   C4WVB2   A0A154PCB6   A0A0A1XME6   A0A2S2NL90   A0A0K8V1N3   G3PE26   A0A026W7E7   A0A2A3E8F0   A0A1B6EKY4   A0A034WXW0   A0A0C9QEM9   A0A3P8UC68   A0A336LJI0   A0A3Q3B7H8   A0A088ABI5   A0A0L0CGD4   A0A0N0U307   A0A1B6LSD0   A0A3Q2FHJ9   C1C2U7   A0A1B0A3F1   A0A3Q2GBJ3   A0A0K8TMF7   A0A091RSK6   A0A2I0M982   A0A1A9YDF9   A0A1B0B009   C1C0D4   A0A2I0M985   A0A3B1K3D5   A0A2H8TU46   A0A1A8ECM6   A0A1L8G708   Q3KPR1   A0A1V4IG26   A0A3B4A2J3   A0A3P8UEL5   A0A1A8K4X6   A0A3B3IN79   A0A091M8P8   A0A091HF74   A0A3B5M4G4   A0A1A8QL70   A0A1A8HRK2   A0A093GLT7   A0A2S2R679   F1QNQ8   A0A1A8VDV5   A0A3P9IWE8   Q5XJ97  

KEGG

101746392    K12592 exosome complex protein LRP1 | (RefSeq) nuclear nucleic acid-binding protein C1D-like

PATHWAY

03018    RNA degradation - Bombyx mori (domestic silkworm)

GO

GO:0003677   GO:0005524   GO:0000103   GO:0004781   GO:0004020   GO:0006364   GO:0005737   GO:0005730   GO:0000178   GO:0003723  

PANTHER

PTHR15341  

Subcellular location

Nucleus  
Cytoplasm  
Nucleolus  

Length:

148

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.50526

Exp number, first 60 AAs:

0.1669

Total prob of N-in:

0.18265

outside

1  -  148

 

 

Pi

112.120632

Theta

124.857032

Tajima's D

-0.313782

CLR

0

CSRT

0.291185440727964

Interpretation

Uncertain