Gene

KWMTBOMO10779  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008392

Annotation

signal_recognition_particle_receptor_alpha_subunit_[Bombyx_mori]

Location

Bomo_Chr18(-):2852536-2861169      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.898 Mitochondrial   Reliability : 1.323

CDS

ATGTTAGATTTATTCAGTATTTTCAGTAAAGGGGGTATTGTGTTATGGTGTTTCCAAAGTACTAGTGAAATATTTTCGCCATCCGTGAACGCTTTAATACGTAGTGTAATATTGCAAGAACGCTCTGGCAATAACACATTCAATCATAATGCCTTAACACTACAATACAAACTAGATAATGAGTTTGAACTGGTTTTTGTAGTTGCATACCAACGCATACTCCAGTTATCATATGTGGATAAGTTCCTCAATGATGTCCACTTGGAGTTCAGGGACAAGTACAAGAATGAGCTCCAGACAGGTCCCTGTATCGTTGATTTTAATTTTAAAACTACCTTTGATAAAGTGCTGAAGGAATGTGAAATATGGGCAAAGTCACAAGCTAAAATTCCAAAACAGATGAGGACTTTTGAGGATTCCCAAAAATCCAAAAAGACGGTTGCATCTATGATCGAACGCAAAGGAGATGAGAAAGGGAAGAAAACTGTCAAAATAGTCGAAAGTAAAAATCTTACAAATGGTAAAGCAGAGGAAGTTACAAATAATACATATGATGATGATGTCATCGCTGCAAACAGAGCCAAGCTAGCACAGAAGCTGGCATCGAAAACAAAGAAGGAACCCAAGAAATCTCCAAAGAGTCCCCAGAAGGCAGACCGCGTGAAGCAGCCCCGCGTGTGGGAGCTCGGCGGCGACACGCGCGACGTCGCTGTGCTGGACTACAGTACTGACCAACCAGGAGATGCTGCTACCTTACTGCCGGACACGCAGTTGATTGGTCAAATGACTGGTGCCATTCGTGACTTGGAAGTAGAATCCGAGGAGAGCAGCAGTGAGGAAGAGGAGGTAACTTCTCAGCCGACTTCCAAGAAAACTGGAGGAATGTTCAGTTTATTAAAAGGTCTAGTCGGTGCAAAAGCATTGTCAGAGGAAACGATGCGACCGGTGTTGGACAAGCTTCGTGATCACCTCATTGGGAAGAACGTCGCCGCGGACATCGCCAATAAGCTCTGTGATAGTGTTGCCATCAAACTAGAGGGGAAGGTGCTAGGTACCTTCGACAGTGTTGCCAAGACGGTGAAGGCTACCCTCACCGAGTCCCTCGTGCGGATACTGTCGCCGAAGCGTCGCGTGGACATCCTGCGGGACTGTCTGCACGCCAAGCAGGAGGGCAGGCCCTACGTCATGGCGTTCTGCGGGGTGAACGGCGTCGGTAAATCGACGAACCTGGCGAAGATCTGCTTCTGGTTGATCGAGAACGATCTGTCGGTGCTGATAGCGGCGTGCGACACGTTCCGCGCCGGCGCCGTGGAGCAGCTGCGCACGCACACGCGACACCTCAACGCGCTGCACCCGCCCGCGCGCCACCACGCACGACACATGGTCACGCTCTACGAGAAGGGATACGGCAAAGACGCGGCCGGCATAGCAATGGAAGCAATACGATACGCGTCTGACACTAAAACCGACGTCGTGCTCATCGACACTGCGGGCCGAATGCAGGACAACGAGCCTCTGATGCGGGCCCTCGCCAAGCTCATCGCGGTCAACGAACCCGACACGGTGCTCTTCGTGGGCGAGGCTCTCGTAGGGAACGAGGCCGTCGACCAGCTGGTCAAGTTCAACCAGGCCCTCGCCGACTACAGCTCGTCCAGCAGTCCGCACGTCATCGACGGAATAGTGCTCACCAAGTTCGATACTATCGACGATAAAGTCGGCGCCGCCATATCGATGACGTACATCACCGGGCAACCGATAGTGTTCGTCGGAACGGGACAAACGTACACCGATTTGAAAGCGCTGAACGCCAACGCTGTAGTTCACGCCTTGATGAAGTGA

Protein

MLDLFSIFSKGGIVLWCFQSTSEIFSPSVNALIRSVILQERSGNNTFNHNALTLQYKLDNEFELVFVVAYQRILQLSYVDKFLNDVHLEFRDKYKNELQTGPCIVDFNFKTTFDKVLKECEIWAKSQAKIPKQMRTFEDSQKSKKTVASMIERKGDEKGKKTVKIVESKNLTNGKAEEVTNNTYDDDVIAANRAKLAQKLASKTKKEPKKSPKSPQKADRVKQPRVWELGGDTRDVAVLDYSTDQPGDAATLLPDTQLIGQMTGAIRDLEVESEESSSEEEEVTSQPTSKKTGGMFSLLKGLVGAKALSEETMRPVLDKLRDHLIGKNVAADIANKLCDSVAIKLEGKVLGTFDSVAKTVKATLTESLVRILSPKRRVDILRDCLHAKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQLRTHTRHLNALHPPARHHARHMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRALAKLIAVNEPDTVLFVGEALVGNEAVDQLVKFNQALADYSSSSSPHVIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKALNANAVVHALMK

Uniprot

Q0N2R5   H9JFU5   A0A2A4J427   A0A2H1VZ60   A0A194PCK6   A0A212ETK6   + More
A0A0N1IPE4   K7J9K8   A0A069DVD0   A0A023F8T3   A0A088AP45   A0A195CAB7   F4X412   A0A151X6E4   V9IGE9   A0A195BGZ4   A0A195FPB6   A0A1Y1LJQ3   A0A154PNW3   U5EYE4   A0A067QJ19   E2B3Y8   A0A0M8ZVN2   E9JC37   A0A2A3EQB1   A0A1L8DVM6   A0A0A9Y262   A0A310SDV2   A0A1B6F339   A0A1B0CC27   A0A026WD67   E2ARX2   A0A158NJL0   A0A0P4VUW5   R4FNW4   Q178J5   A0A084VFJ0   A0A1B6IS61   D2A3J6   A0A023EUH7   A0A1J1J681   A0A182KG01   A0A182WYD0   A0A182U4T0   Q7PSJ1   A0A182KVP4   A0A182I5F8   A0A182YRK4   A0A182V256   A0A182PJD2   A0A182GMC6   A0A182NC68   A0A182IZY4   A0A2M4A4A8   A0A182RW26   B0WDS3   A0A2M4A4A5   A0A182QWA7   W5JGQ4   A0A1Q3FHJ0   A0A1Q3FHM5   A0A0K8TMF5   A0A0L7QSX7   A0A2M4BH03   A0A336MT09   A0A2M4BGY1   A0A2M4BGY6   J3JTJ5   A0A336MV84   A0A182F467   A0A2M3Z0M9   A0A182M497   A0A1W4XHC4   A0A1S3DAA0   A0A2S2QQE9   A0A0C9PLB3   A0A2S2P6A5   A0A2H8U1X4   J9K9M6   A0A2R7WSB6   A0A1Z5KVX9   E0VIM1   A0A162D7B5   A0A2R5LN40   A0A0P5XM93   A0A0P4Y2R0   E9G6J2   A0A0P5A1J5   A0A0P4XZY5   A0A0P5A2K5   A0A293M1B2   A0A0K8RIY4   A0A0P6E389   A0A0P5ZH84   A0A2L2Y3W6   A0A0P5MS51   A0A087UZW9   A0A023GD26   A0A1S3JUS1   A0A131XEV6  

Pubmed

19121390    26354079    22118469    20075255    26334808    25474469    + More
21719571    28004739    24845553    20798317    21282665    25401762    26823975    24508170    30249741    21347285    27129103    17510324    24438588    18362917    19820115    24945155    12364791    14747013    17210077    20966253    25244985    26483478    20920257    23761445    26369729    22516182    23537049    28528879    20566863    21292972    26561354    28049606   

EMBL

DQ646416    ABH10806.1    BABH01001596    BABH01001597    NWSH01003288    PCG66619.1    + More
ODYU01005346    SOQ46093.1    KQ459606    KPI90932.1    AGBW02012556    OWR44835.1    KQ460556    KPJ13998.1    AAZX01006880    GBGD01000846    JAC88043.1    GBBI01000876    JAC17836.1    KQ978081    KYM97131.1    GL888624    EGI58945.1    KQ982482    KYQ55973.1    JR041334    AEY59414.1    KQ976490    KYM83439.1    KQ981424    KYN41789.1    GEZM01057672    JAV72165.1    KQ435007    KZC13571.1    GANO01000349    JAB59522.1    KK853289    KDR08912.1    GL445421    EFN89594.1    KQ435859    KOX70543.1    GL771706    EFZ09612.1    KZ288193    PBC33983.1    GFDF01003739    JAV10345.1    GBHO01018396    GBRD01005219    GDHC01021235    JAG25208.1    JAG60602.1    JAP97393.1    KQ762518    OAD55792.1    GECZ01025202    JAS44567.1    AJWK01006097    KK107260    QOIP01000001    EZA54007.1    RLU27192.1    GL442192    EFN63821.1    ADTU01018039    ADTU01018040    ADTU01018041    GDKW01000766    JAI55829.1    ACPB03016850    GAHY01000408    JAA77102.1    CH477362    EAT42647.1    ATLV01012419    KE524791    KFB36734.1    GECU01017934    JAS89772.1    KQ971338    EFA02325.1    GAPW01000538    JAC13060.1    CVRI01000070    CRL07276.1    AAAB01008823    EAA05506.5    APCN01003437    JXUM01074362    KQ562824    KXJ75055.1    GGFK01002260    MBW35581.1    DS231900    EDS44826.1    GGFK01002268    MBW35589.1    AXCN02002119    ADMH02001239    ETN63542.1    GFDL01008072    JAV26973.1    GFDL01008001    JAV27044.1    GDAI01002265    JAI15338.1    KQ414757    KOC61576.1    GGFJ01003176    MBW52317.1    UFQT01002342    SSX33240.1    GGFJ01003174    MBW52315.1    GGFJ01003175    MBW52316.1    BT126552    KB632420    AEE61516.1    ERL95318.1    UFQS01002518    UFQT01002518    SSX14199.1    SSX33615.1    GGFM01001336    MBW22087.1    AXCM01002806    GGMS01010796    MBY79999.1    GBYB01001828    GBYB01011017    JAG71595.1    JAG80784.1    GGMR01012341    MBY24960.1    GFXV01007663    MBW19468.1    ABLF02014861    KK855412    PTY22446.1    GFJQ02007760    JAV99209.1    DS235201    EEB13227.1    LRGB01002384    KZS07914.1    GGLE01006827    MBY10953.1    GDIP01070243    JAM33472.1    GDIP01233380    JAI90021.1    GL732533    EFX84945.1    GDIP01217879    JAJ05523.1    GDIP01234479    JAI88922.1    GDIP01205176    JAJ18226.1    GFWV01009270    MAA33999.1    GADI01003329    JAA70479.1    GDIQ01083203    JAN11534.1    GDIP01043752    JAM59963.1    IAAA01003051    LAA02851.1    GDIQ01174809    JAK76916.1    KK122523    KFM82908.1    GBBM01003651    JAC31767.1    GEFH01003699    JAP64882.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000053240    UP000002358    + More
UP000005203    UP000078542    UP000007755    UP000075809    UP000078540    UP000078541    UP000076502    UP000027135    UP000008237    UP000053105    UP000242457    UP000092461    UP000053097    UP000279307    UP000000311    UP000005205    UP000015103    UP000008820    UP000030765    UP000007266    UP000183832    UP000075881    UP000076407    UP000075902    UP000007062    UP000075882    UP000075840    UP000076408    UP000075903    UP000075885    UP000069940    UP000249989    UP000075884    UP000075880    UP000075900    UP000002320    UP000075886    UP000000673    UP000053825    UP000030742    UP000069272    UP000075883    UP000192223    UP000079169    UP000007819    UP000009046    UP000076858    UP000000305    UP000054359    UP000085678   

PRIDE

Q0N2R5    H9JFU5   

Pfam

PF02881   SRP54_N        + More
PF00448   SRP54
PF04086   SRP-alpha_N

Interpro

IPR000897   SRP54_GTPase_dom        + More
IPR011012   Longin-like_dom_sf       
IPR003593   AAA+_ATPase       
IPR007222   Sig_recog_particle_rcpt_asu_N       
IPR036225   SRP/SRP_N       
IPR027417   P-loop_NTPase       
IPR013822   Signal_recog_particl_SRP54_hlx       
IPR042101   SRP54_N_sf       

SUPFAM

SSF64356   SSF64356        + More
SSF47364   SSF47364       
SSF52540   SSF52540       

Gene 3D

1.20.120.140    

ProteinModelPortal

Q0N2R5   H9JFU5   A0A2A4J427   A0A2H1VZ60   A0A194PCK6   A0A212ETK6   + More
A0A0N1IPE4   K7J9K8   A0A069DVD0   A0A023F8T3   A0A088AP45   A0A195CAB7   F4X412   A0A151X6E4   V9IGE9   A0A195BGZ4   A0A195FPB6   A0A1Y1LJQ3   A0A154PNW3   U5EYE4   A0A067QJ19   E2B3Y8   A0A0M8ZVN2   E9JC37   A0A2A3EQB1   A0A1L8DVM6   A0A0A9Y262   A0A310SDV2   A0A1B6F339   A0A1B0CC27   A0A026WD67   E2ARX2   A0A158NJL0   A0A0P4VUW5   R4FNW4   Q178J5   A0A084VFJ0   A0A1B6IS61   D2A3J6   A0A023EUH7   A0A1J1J681   A0A182KG01   A0A182WYD0   A0A182U4T0   Q7PSJ1   A0A182KVP4   A0A182I5F8   A0A182YRK4   A0A182V256   A0A182PJD2   A0A182GMC6   A0A182NC68   A0A182IZY4   A0A2M4A4A8   A0A182RW26   B0WDS3   A0A2M4A4A5   A0A182QWA7   W5JGQ4   A0A1Q3FHJ0   A0A1Q3FHM5   A0A0K8TMF5   A0A0L7QSX7   A0A2M4BH03   A0A336MT09   A0A2M4BGY1   A0A2M4BGY6   J3JTJ5   A0A336MV84   A0A182F467   A0A2M3Z0M9   A0A182M497   A0A1W4XHC4   A0A1S3DAA0   A0A2S2QQE9   A0A0C9PLB3   A0A2S2P6A5   A0A2H8U1X4   J9K9M6   A0A2R7WSB6   A0A1Z5KVX9   E0VIM1   A0A162D7B5   A0A2R5LN40   A0A0P5XM93   A0A0P4Y2R0   E9G6J2   A0A0P5A1J5   A0A0P4XZY5   A0A0P5A2K5   A0A293M1B2   A0A0K8RIY4   A0A0P6E389   A0A0P5ZH84   A0A2L2Y3W6   A0A0P5MS51   A0A087UZW9   A0A023GD26   A0A1S3JUS1   A0A131XEV6  

PDB

6FRK     E-value=0,     Score=1657

KEGG

778512    K13431 signal recognition particle receptor subunit alpha | (RefSeq) signal recognition particle rec

PATHWAY

03060    Protein export - Bombyx mori (domestic silkworm)

GO

GO:0005047   GO:0003924   GO:0005785   GO:0005525   GO:0006614   GO:0006605   GO:0016020   GO:0045047   GO:0005789   GO:0006886   GO:0006810   GO:0016614   GO:0005506   GO:0003824  

Length:

612

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.31243

Exp number, first 60 AAs:

0.0161

Total prob of N-in:

0.00093

outside

1  -  612

 

 

Pi

189.363953

Theta

18.769357

Tajima's D

-1.22658

CLR

368.213093

CSRT

0.0996450177491125

Interpretation

Uncertain