Gene

KWMTBOMO10760  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008399

Annotation

PREDICTED:_symplekin_[Diachasma_alloeum]

Location

Bomo_Chr18(-):2560401-2563529      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.363 PlasmaMembrane   Reliability : 1.297

CDS

ATGCAATTAATCATCAATGATTTACAGGTCCTGGCAGCAGTATTGCAGAGGCTGGTCGAGGAGCCGAAGATCCCTGTTCTGATGATGCGGACCGTGCTGCAGAGCCTCACCCTGTACCCCGCCCTCAGTCCGCTCGTCATGAACATCCTGCAGCTGCTAATTGAAAAGGAGGCGTGGCTGAACAAGGTGGCGTGGGAGGGCTGGATCAAGAGCTGCGAGCGGCTGATGCCGGCATCGTTCGGTCTGCTGACGTCCCTGCCGGCGGCGGCGCTGGGCGGGCTGCACAAGGCGCCGGGGCTGCTGGGCGGCCTGCGCGCGCACGTGGCCGCCCTGCCGCCGGAGCGCCGCGCCGCGCTGCCGCCGCACGTCGCCGCGCTGTGCCACCAGACAGACACCCAATATCCAGCGTCGCAAGTCACAATGAGCCAGCCTAACCTGATCCCCGAACAGAACCCAATCGAGCCCCTACCCCCAGGAATGGAGTAA

Protein

MQLIINDLQVLAAVLQRLVEEPKIPVLMMRTVLQSLTLYPALSPLVMNILQLLIEKEAWLNKVAWEGWIKSCERLMPASFGLLTSLPAAALGGLHKAPGLLGGLRAHVAALPPERRAALPPHVAALCHQTDTQYPASQVTMSQPNLIPEQNPIEPLPPGME

Uniprot

A0A212F7B0   A0A0C9RUL1   A0A1B6ETX3   A0A194PE34   A0A1B6IGL9   A0A1B6M1X6   + More
A0A1B6M3E4   A0A0K2TH07   A0A2J7QFV0   V9IGG0   A0A310SHS9   A0A2P8XZM2   G3ULZ0   A0A0L7QV54   A0A1Y1K0W3   A0A1B0GNG7   H0VGW0   A0A087ZWE6   A0A2A3ELE0   G1NVF9   N6TAE8   S7MRH7   N6U6I3   A0A2P6KH39   A0A2K6GAK3   A0A1A7ZXR6   A0A2K6AYU4   A0A2K5ZYT7   A0A2R9CGZ3   A0A2I3RQH4   A0A2J7QFW6   U3E3S2   L5LUB2   F7IQ05   A0A2K6GAJ1   A0A2K6GAL7  

Pubmed

22118469    26354079    29403074    28004739    21993624    23537049    + More
22722832    16136131    25243066   

EMBL

AGBW02009901    OWR49608.1    GBYB01012545    JAG82312.1    GECZ01028325    JAS41444.1    + More
KQ459606    KPI90949.1    GECU01021649    JAS86057.1    GEBQ01010052    JAT29925.1    GEBQ01009559    JAT30418.1    HACA01007496    CDW24857.1    NEVH01014841    PNF27476.1    JR043318    AEY59757.1    KQ769068    OAD52992.1    PYGN01001118    PSN37455.1    KQ414727    KOC62510.1    GEZM01096200    JAV55063.1    AJVK01029460    AAKN02048247    KZ288215    PBC32520.1    AAPE02060482    AAPE02060483    APGK01037183    KB740948    KB632348    ENN77249.1    ERL93197.1    KE161938    EPQ05995.1    ENN77250.1    MWRG01012072    PRD25629.1    HADY01008708    HAEJ01012697    SBP47193.1    AJFE02059346    AJFE02059347    AJFE02059348    AJFE02059349    AJFE02059350    AJFE02059351    AJFE02059352    AJFE02059353    AACZ04019599    PNF27475.1    GAMT01007935    GAMS01006158    GAMR01003920    GAMP01007177    JAB03926.1    JAB16978.1    JAB30012.1    JAB45578.1    KB107801    ELK29686.1   

Proteomes

UP000007151    UP000053268    UP000235965    UP000245037    UP000007646    UP000053825    + More
UP000092462    UP000005447    UP000005203    UP000242457    UP000001074    UP000019118    UP000030742    UP000233160    UP000233120    UP000233140    UP000240080    UP000002277    UP000008225   

Pfam

PF12295   Symplekin_C        + More
PF11935   DUF3453
PF04712   Radial_spoke

Interpro

IPR032460   Symplekin/Pta1_N        + More
IPR016024   ARM-type_fold       
IPR022075   Symplekin_C       
IPR011989   ARM-like       
IPR021850   Symplekin/Pta1       
IPR006802   Radial_spoke       

SUPFAM

SSF48371   SSF48371       

Gene 3D

1.25.10.10    

ProteinModelPortal

A0A212F7B0   A0A0C9RUL1   A0A1B6ETX3   A0A194PE34   A0A1B6IGL9   A0A1B6M1X6   + More
A0A1B6M3E4   A0A0K2TH07   A0A2J7QFV0   V9IGG0   A0A310SHS9   A0A2P8XZM2   G3ULZ0   A0A0L7QV54   A0A1Y1K0W3   A0A1B0GNG7   H0VGW0   A0A087ZWE6   A0A2A3ELE0   G1NVF9   N6TAE8   S7MRH7   N6U6I3   A0A2P6KH39   A0A2K6GAK3   A0A1A7ZXR6   A0A2K6AYU4   A0A2K5ZYT7   A0A2R9CGZ3   A0A2I3RQH4   A0A2J7QFW6   U3E3S2   L5LUB2   F7IQ05   A0A2K6GAJ1   A0A2K6GAL7  

KEGG

101739316    K06100 symplekin | (RefSeq) symplekin

GO

GO:0005886   GO:0032091   GO:0097165   GO:0035307   GO:0006378   GO:0005829   GO:0005654   GO:0016021  

PANTHER

PTHR15245:SF20   PTHR13159  

Length:

161

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

4.9092

Exp number, first 60 AAs:

3.6173

Total prob of N-in:

0.14194

outside

1  -  161

 

 

Pi

257.464542

Theta

143.189182

Tajima's D

2.933926

CLR

0.251262

CSRT

0.974251287435628

Interpretation

Uncertain