SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10738  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA008409
Annotation
PREDICTED:_homeobox_protein_MOX-2-like_[Papilio_polytes]
Transcription factor
Location in the cell
Nuclear   Reliability : 3.742
 

Sequence

CDS
ATGGAATACATTAGAACAGATTTTCAAGCTTACGAAGACACTGATAAATATGTTTACGAGACGAACATACAAAGCTATCAACCGAACTATTACGAATCTTACGCTAACGTGGACTGCCCAAGGGAAATGCTTCCCCAGAATTATATGCAGATGTTTTACGAATACCATCCGGAAAGAGATGAAGATGACTGGTGGAGTTCTTGGGATGATTCTGTGCTGGTGAAGGAGGAAATCGAAGGGGACACTAGTGCTGCTGGTTCCAGTATTAGTGATGAAGGACTACAATCCCCCGCAGGCAACCGCAAGGAGCGCACGGCCTTCACCAAAGCACAAATCAAGAGTTTGGAGGCAGAATTCGCACGAGCCAATTACTTGACAAGACTTCGGAGATACGAGATTGCAGTGGCCCTTCACTTGACTGAGAGACAGGTCAAAGTCTGGTTTCAAAACAGGAGAATGAAATGGAAGAGGACTAAGGGGGCCAAACATAACAAGAAAAAGGATTGA
Protein
MEYIRTDFQAYEDTDKYVYETNIQSYQPNYYESYANVDCPREMLPQNYMQMFYEYHPERDEDDWWSSWDDSVLVKEEIEGDTSAAGSSISDEGLQSPAGNRKERTAFTKAQIKSLEAEFARANYLTRLRRYEIAVALHLTERQVKVWFQNRRMKWKRTKGAKHNKKKD

Summary

Pfam
PF00046   Homeodomain
Interpro
IPR009057   Homeobox-like_sf        + More
IPR001356   Homeobox_dom       
IPR017970   Homeobox_CS       
IPR020479   Homeobox_metazoa       
SUPFAM
SSF46689   SSF46689       
PDB
2H1K     E-value=6.35772e-12,     Score=166

Ontologies

Topology

Subcellular location
Nucleus  
Length:
168
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0016
Exp number, first 60 AAs:
0
Total prob of N-in:
0.33363
outside
1  -  168
 
 

Population Genetic Test Statistics

Pi
217.557388
Theta
165.188645
Tajima's D
1.037899
CLR
0.3312
CSRT
0.671966401679916
Interpretation
Uncertain
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