Gene

KWMTBOMO10736

Annotation

putative_mitochondrial_ribosomal_protein_l49_[Operophtera_brumata]

Location

Bomo_Chr18(-):2071716-2072661      View in EpiBrowser

Full name

Probable 39S ribosomal protein L49, mitochondrial      

Location in the cell

Mitochondrial   Reliability : 3.334

CDS

ATGGCGACCGTATTACGAACACACTCCGCGTTTGCGCGACTTTTATTTGGAAAAAATGGACGAATCTTGAACAACTCACTTGATTTGGGTGCAAAATTATTGCCGGAATCACAATTGGCACTATCTTCAAAACATTACTCTAGTTACGGAAAATCACCGTTTGTGCGTAAAATCAAAGAGCAATATAATTATGAAATAGAAAAGAATCCGCCAGAATGGGAATACGTCAAACGTTTGCTGCCGTTTACTACTATACCTAAGATAATTCCCAAAGATAGTTATCCTTCAGGATGGGTCCCCCCAAAAGAAGAGGCGTTAAACCATCCATACTTTTTATCAAGAACAAAAAATGCTGAGCTACCTATCTATTTAAAGATTACTTACAGGGGAATGCGTAAAATATCCATAATAAGAAAAATTGAAGGCGACATATGGCTTTTGAACGATGAAATCAAACAATATTTAAAACAGAAGAACAAGAGATACGTAGAAACTAGAGTCCATGAAGTTGCGCGGTTGATTGAAACTAAAGGGGATTATGTAAATGATTTACGAGAATGGGCCCTATCCAAGGGTTTTTAA

Protein

MATVLRTHSAFARLLFGKNGRILNNSLDLGAKLLPESQLALSSKHYSSYGKSPFVRKIKEQYNYEIEKNPPEWEYVKRLLPFTTIPKIIPKDSYPSGWVPPKEEALNHPYFLSRTKNAELPIYLKITYRGMRKISIIRKIEGDIWLLNDEIKQYLKQKNKRYVETRVHEVARLIETKGDYVNDLREWALSKGF

Subunit

Component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.

Similarity

Belongs to the mitochondrion-specific ribosomal protein mL49 family.

Keywords

Complete proteome   Mitochondrion   Reference proteome   Ribonucleoprotein   Ribosomal protein  

Feature

chain  Probable 39S ribosomal protein L49, mitochondrial

Uniprot

A0A2H1VYQ6   A0A0L7LRC2   A0A2A4K1R3   A0A3S2NTK2   A0A194PIQ2   A0A0N1PGP2   + More
A0A212FAR3   A0A1B6D1U2   A0A2J7R2G1   E2C8I4   B4NEI0   A0A1B6D8B0   B4L601   A0A1B0C7W2   A0A2A3EMS9   A0A1A9XH53   A0A0L0BX38   B3NX87   A0A1B0FKV7   C4WTC6   A0A0J7KXJ6   B4Q1Y7   A0A154PRG1   A0A1A9WX34   A0A1I8NTB3   A0A1A9VYY7   A0A1A9ZIB8   A0A1W4X290   W8BT53   A0A1Y1KZ85   A0A034WJV4   A0A1B0D2Q9   A0A088A0Z1   A0A0M4F8U5   A0A1W4VL04   N6TX47   A0A2S2PS47   F3YDM8   Q9VYI3   A0A1B0CFC8   A0A1Y1KVQ5   B4JX83   A0A182VZU6   B4NUC7   B4IGK4   B3MS22   A0A182V048   A0A1L8DR72   A0A1I8M4Z2   A0A2H8TED2   A0A182TF01   B4H9S5   Q29FT7   Q7PQY2   A0A182HS78   A0A0R3P6M1   A0A182XAD8   A0A182LE58   A0A182R459   A0A151X456   A0A1Q3FBN1   A0A0K8VSC3   A0A1J1ID38   A0A232EU66   E9GYL0   A0A2M4C0Q8   A0A182MC25   B0W6R9   A0A0M8ZY61   A0A2M3ZCH5   A0A182QVY4   A0A2M3ZBY0   A0A3B0KU98   U4UDV6   U4UFT9   A0A2M4AYS4   A0A1L8DR26   A0A2M4AX99   A0A182Y406   A0A1B6K7U2   Q1HQV0   A0A336LTM0   W5J5S7   A0A182PH66   A0A2M4C0T8   A0A2M4C0P0   A0A2M4AYS7   A0A182KGA9  

Pubmed

26227816    26354079    22118469    20798317    17994087    26108605    + More
17550304    24495485    28004739    25348373    23537049    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25315136    15632085    23185243    12364791    14747013    17210077    20966253    28648823    21292972    25244985    17204158    17510324    20920257    23761445   

EMBL

ODYU01005266    SOQ45948.1    JTDY01000320    KOB77711.1    NWSH01000229    PCG78205.1    + More
RSAL01000088    RVE48187.1    KQ459606    KPI90970.1    KQ460326    KPJ15668.1    AGBW02009438    OWR50820.1    GEDC01017629    JAS19669.1    NEVH01007830    PNF35030.1    GL453666    EFN75714.1    CH964239    EDW82149.1    GEDC01015396    JAS21902.1    CH933812    EDW05797.1    JXJN01000753    KZ288215    PBC32572.1    JRES01001207    KNC24575.1    CH954180    EDV47259.1    CCAG010022322    ABLF02027853    AK340560    BAH71146.1    LBMM01002267    KMQ95041.1    CM000162    EDX01508.1    KQ435078    KZC14481.1    GAMC01004193    JAC02363.1    GEZM01072540    JAV65480.1    GAKP01004542    JAC54410.1    AJVK01010756    CP012528    ALC48507.1    APGK01011402    APGK01021494    KB740333    KB738459    ENN80863.1    ENN82593.1    GGMR01019670    MBY32289.1    BT126389    AE014298    AED98567.1    AHN59640.1    AJWK01009972    GEZM01072541    JAV65479.1    CH916376    EDV95359.1    CH983889    EDX16574.1    CH480836    EDW48954.1    CH902622    EDV34577.1    GFDF01005145    JAV08939.1    GFXV01000646    MBW12451.1    CH479231    EDW36572.1    CH379065    EAL31492.1    KRT07227.1    AAAB01008859    EAA08128.5    APCN01000250    KRT07228.1    KRT07229.1    KQ982548    KYQ55215.1    GFDL01010064    JAV24981.1    GDHF01010537    JAI41777.1    CVRI01000047    CRK97650.1    NNAY01002166    OXU21892.1    GL732575    EFX75414.1    GGFJ01009748    MBW58889.1    AXCM01000847    DS231849    EDS36900.1    KQ435821    KOX72466.1    GGFM01005417    MBW26168.1    AXCN02001476    GGFM01005250    MBW26001.1    OUUW01000021    SPP89386.1    KB632278    ERL91237.1    ERL91238.1    GGFK01012613    MBW45934.1    GFDF01005146    JAV08938.1    GGFK01012070    MBW45391.1    GECU01010859    GECU01000179    JAS96847.1    JAT07528.1    DQ440344    CH477193    ABF18377.1    EAT48569.1    UFQT01000095    SSX19677.1    ADMH02002092    ETN59346.1    GGFJ01009753    MBW58894.1    GGFJ01009728    MBW58869.1    GGFK01012616    MBW45937.1   

Proteomes

UP000037510    UP000218220    UP000283053    UP000053268    UP000053240    UP000007151    + More
UP000235965    UP000008237    UP000007798    UP000009192    UP000092460    UP000242457    UP000092443    UP000037069    UP000008711    UP000092444    UP000007819    UP000036403    UP000002282    UP000076502    UP000091820    UP000095300    UP000078200    UP000092445    UP000192223    UP000092462    UP000005203    UP000092553    UP000192221    UP000019118    UP000000803    UP000092461    UP000001070    UP000075920    UP000000304    UP000001292    UP000007801    UP000075903    UP000095301    UP000075902    UP000008744    UP000001819    UP000007062    UP000075840    UP000076407    UP000075882    UP000075900    UP000075809    UP000183832    UP000215335    UP000000305    UP000075883    UP000002320    UP000053105    UP000075886    UP000268350    UP000030742    UP000076408    UP000008820    UP000000673    UP000075885    UP000075881   

PRIDE

F3YDM8    Q9VYI3   

Pfam

PF05046   Img2        + More
PF03265   DNase_II

Interpro

IPR007740   Ribosomal_L49/IMG2        + More
IPR036877   SUI1_dom_sf       
IPR001950   SUI1       
IPR004947   DNase_II       

SUPFAM

SSF55159   SSF55159       

ProteinModelPortal

A0A2H1VYQ6   A0A0L7LRC2   A0A2A4K1R3   A0A3S2NTK2   A0A194PIQ2   A0A0N1PGP2   + More
A0A212FAR3   A0A1B6D1U2   A0A2J7R2G1   E2C8I4   B4NEI0   A0A1B6D8B0   B4L601   A0A1B0C7W2   A0A2A3EMS9   A0A1A9XH53   A0A0L0BX38   B3NX87   A0A1B0FKV7   C4WTC6   A0A0J7KXJ6   B4Q1Y7   A0A154PRG1   A0A1A9WX34   A0A1I8NTB3   A0A1A9VYY7   A0A1A9ZIB8   A0A1W4X290   W8BT53   A0A1Y1KZ85   A0A034WJV4   A0A1B0D2Q9   A0A088A0Z1   A0A0M4F8U5   A0A1W4VL04   N6TX47   A0A2S2PS47   F3YDM8   Q9VYI3   A0A1B0CFC8   A0A1Y1KVQ5   B4JX83   A0A182VZU6   B4NUC7   B4IGK4   B3MS22   A0A182V048   A0A1L8DR72   A0A1I8M4Z2   A0A2H8TED2   A0A182TF01   B4H9S5   Q29FT7   Q7PQY2   A0A182HS78   A0A0R3P6M1   A0A182XAD8   A0A182LE58   A0A182R459   A0A151X456   A0A1Q3FBN1   A0A0K8VSC3   A0A1J1ID38   A0A232EU66   E9GYL0   A0A2M4C0Q8   A0A182MC25   B0W6R9   A0A0M8ZY61   A0A2M3ZCH5   A0A182QVY4   A0A2M3ZBY0   A0A3B0KU98   U4UDV6   U4UFT9   A0A2M4AYS4   A0A1L8DR26   A0A2M4AX99   A0A182Y406   A0A1B6K7U2   Q1HQV0   A0A336LTM0   W5J5S7   A0A182PH66   A0A2M4C0T8   A0A2M4C0P0   A0A2M4AYS7   A0A182KGA9  

PDB

6GB2     E-value=5.05357e-20,     Score=236

KEGG

101742303    K17430 large subunit ribosomal protein L49 | (RefSeq) probable 39S ribosomal protein L49, mitochondr

GO

GO:0005840   GO:0006412   GO:0003735   GO:0003743   GO:0005762   GO:0032543   GO:0004531   GO:0005622   GO:0005515   GO:0016491   GO:0046872   GO:0051537   GO:0003824  

PANTHER

PTHR13477   PTHR10858  

Subcellular location

Mitochondrion  

Length:

193

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00059

Exp number, first 60 AAs:

0.00059

Total prob of N-in:

0.16702

outside

1  -  193

 

 

Pi

121.299319

Theta

145.357188

Tajima's D

-0.727726

CLR

657.899994

CSRT

0.195440227988601

Interpretation

Uncertain