Gene

KWMTBOMO10724  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008284

Annotation

putative_ELAV-like_protein_1_[Danaus_plexippus]

Location

Bomo_Chr18(+):1610119-1611513      View in EpiBrowser

Full name

ELAV-like protein      

Location in the cell

PlasmaMembrane   Reliability : 1.147

CDS

ATGCAAAACGATATGGAGAATGGCGGCGGCGACGCCAATACCAATGTGTCACCGACCAAACTCATGGTCAATTACATACCGGAGCTGATGACGCGCGACATGATGTACGCGCTCTTCTCTGCCATGGGTAAAATAGAGAGCTGCAAGCTGATAGCGAATCGCGGCTACGGCTTTGTTGAGTATGAAAAACATGAGGACGCTGAGAAGGCGCGGGCTGCATTCAACGGCCTACTGATGCAAGGCAAGACGCTGAAAGTGTCGTTTGCGCTCCTCAACCCTGAGAACAAAGTCAGCCACAAGCCCGACACCGAATCCAACCTGTACATCAGCAATTTACCACCAGACATGACCCTCGAAAGACTCAACACTCTTTTCAGTCCTTTCGGTAACATCACGAATAGCCGCGTGTCACAAGGTATCGGCTTTGTTTGCTACGAGACCCGGCAACAGGCCGAAGATGCAATAAAACACATGAACGGACAATGCCCAATACCGGGAGCGGGTGCCGTCATCGTCAAGTTTGCGAATAAACCTAACGCAAATAAAAATGCTCCTAGACCTTCGGCACGTTCCGGCGTGGGAGCTCCGCCGATCGCGTATAACGGAGCAACTGCTGTGTTCAACGGTTCTACGCCTGCAGCTTTCAACGGTACTAATATTAGTGCAGCGTTCGGAGCGCGCGCTTATGCCACTGGTTTCCCGCAGGCGTCGCCGCCACCACTGCTACCTTCGCCCGGCAAGGCGCTGCCATTCATCAATAAAGGCCAACAACGCTTCAATCCAATGGCTGCTTCGAACCACAATACGTTGCCGCTGTTAGGAGCGCCCGCAAGTCCGTTGCCGTTGTTGGGTACGCCCCCTGCATCACATCAGACCACAGTGTATGTATACAACATAGGCGAGGAGACCGAAGAGCTGGCTCTTTGGCAGCTCTTTGGCCCCTATGGTGCCATCGATTCTATAAAAGTGATAAAGGATCCAGAAACTAAGAAAAATAAAGGTTTTGCATTTGTGAACATGCGTGAGTATGATGAGGCTGCGATGGCCATCCAGGCTCTCAATGGGTACACGCTCAATGGACAGGTTCTATCTGTTAGCTTTAAGACACAGAAACGAAGCGGTCAGTGA

Protein

MQNDMENGGGDANTNVSPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMNGQCPIPGAGAVIVKFANKPNANKNAPRPSARSGVGAPPIAYNGATAVFNGSTPAAFNGTNISAAFGARAYATGFPQASPPPLLPSPGKALPFINKGQQRFNPMAASNHNTLPLLGAPASPLPLLGTPPASHQTTVYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQALNGYTLNGQVLSVSFKTQKRSGQ

Similarity

Belongs to the RRM elav family.

Uniprot

H9JFI7   A0A2W1B5K3   A0A2A4JWK3   A0A212FG19   A0A0N1II74   S4PA91   + More
A0A194PIR3   A0A0L7LL02   A0A087ZTS9   F4W7V7   E2C5I2   A0A0L7RB98   A0A3L8DI36   A0A1B6DPH5   R4WQR9   A0A1A9YQG7   A0A026WCC9   A0A0P5CC38   A0A195D982   A0A0A9XNL4   A0A158NDW0   A0A0A9WQK4   A0A023F5T6   A0A0L0C3B0   A0A0P4ZQW3   A0A0P5C069   A0A3P9NGK4   A0A3P9NG85   A0A3B3X9Q6   A0A3B3VYT9   A0A096M106   A0A3B3YNK8   A0A3B5R808   A0A087XVG5   A0A315V990   A0A0S7GKZ9   A0A2R7VQJ7   A0A3Q2D645   A0A3Q2D623   A0A2A3EDH0   A0A3P8UGM0  

Pubmed

19121390    28756777    22118469    26354079    23622113    26227816    + More
21719571    20798317    30249741    23691247    24508170    25401762    21347285    25474469    26108605    23542700    29703783    24487278   

EMBL

BABH01035057    KZ150385    PZC71068.1    NWSH01000498    PCG76014.1    AGBW02008727    + More
OWR52678.1    KQ460326    KPJ15676.1    GAIX01003354    JAA89206.1    KQ459606    KPI90980.1    JTDY01000783    KOB75891.1    GL887888    EGI69627.1    GL452770    EFN76795.1    KQ414617    KOC68197.1    QOIP01000008    RLU19589.1    GEDC01009775    JAS27523.1    AK418011    BAN21226.1    KK107274    EZA53725.1    GDIP01177536    JAJ45866.1    KQ981153    KYN08964.1    GBHO01021277    JAG22327.1    ADTU01013043    GBHO01033903    JAG09701.1    GBBI01002170    JAC16542.1    JRES01000955    KNC26820.1    GDIP01209178    JAJ14224.1    GDIP01177535    JAJ45867.1    AYCK01020055    NHOQ01002037    PWA19964.1    GBYX01451691    GBYX01451689    JAO29820.1    KK854029    PTY09794.1    KZ288291    PBC29216.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000053268    UP000037510    + More
UP000005203    UP000007755    UP000008237    UP000053825    UP000279307    UP000092443    UP000053097    UP000078492    UP000005205    UP000037069    UP000242638    UP000261480    UP000261500    UP000028760    UP000002852    UP000265020    UP000242457    UP000265120   

PRIDE

H9JFI7   

Pfam

PF00076   RRM_1

Interpro

IPR035979   RBD_domain_sf        + More
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR002343   Hud_Sxl_RNA       
IPR006548   ELAD_HU_SF       
IPR034775   ELAV/Hu_RRM1       
IPR003954   RRM_dom_euk       

SUPFAM

SSF54928   SSF54928       

Gene 3D

3.30.70.330    

CDD

cd12650  RRM1_Hu

ProteinModelPortal

H9JFI7   A0A2W1B5K3   A0A2A4JWK3   A0A212FG19   A0A0N1II74   S4PA91   + More
A0A194PIR3   A0A0L7LL02   A0A087ZTS9   F4W7V7   E2C5I2   A0A0L7RB98   A0A3L8DI36   A0A1B6DPH5   R4WQR9   A0A1A9YQG7   A0A026WCC9   A0A0P5CC38   A0A195D982   A0A0A9XNL4   A0A158NDW0   A0A0A9WQK4   A0A023F5T6   A0A0L0C3B0   A0A0P4ZQW3   A0A0P5C069   A0A3P9NGK4   A0A3P9NG85   A0A3B3X9Q6   A0A3B3VYT9   A0A096M106   A0A3B3YNK8   A0A3B5R808   A0A087XVG5   A0A315V990   A0A0S7GKZ9   A0A2R7VQJ7   A0A3Q2D645   A0A3Q2D623   A0A2A3EDH0   A0A3P8UGM0  

PDB

1G2E     E-value=2.47237e-29,     Score=321

KEGG

101737537    no KO assigned | (RefSeq) ELAV-like protein 1 pseudogene

GO

GO:0003723   GO:0003676   GO:0000166   GO:0007165   GO:0005515   GO:0016491   GO:0046872   GO:0051537   GO:0003824  

Length:

375

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.20869

Exp number, first 60 AAs:

0.04753

Total prob of N-in:

0.01487

outside

1  -  375

 

 

Pi

258.206559

Theta

228.952616

Tajima's D

0.603057

CLR

0.000777

CSRT

0.549722513874306

Interpretation

Uncertain