Gene

KWMTBOMO10715

Pre Gene Modal

BGIBMGA008277

Annotation

PREDICTED:_anaphase-promoting_complex_subunit_1-like_[Bombyx_mori]

Location

Bomo_Chr18(+):1398305-1401739      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.293

CDS

ATGGCGATCCACTGCACCATAGGGCTGCTGTTCCTGGGCGGCGGGCGGTGCACGCTCAGCACCACGCCCACCGCCGTGGCCGCGCTGCTGGCCGCCTTCTTCCCCAAGTTCCCGACGCACAGCGAGGACAACCGGTACCACCTGCAGGCGCTGCGGCACCTGTACGTGCTGGCCGTGGAGCCGCGCCTGCTGCTGCCGCGGGACATCGACACCGGCGAGCTGTGCTACGCTCACATACAGGTCATCGACCTGCAGGGCTCAGTGCGGCAGATGAAGGCGCCGTGCATCCTCCCCGAACTGGACAAGCTGAAGGAGGTCAAGATTGACGACCCTCGGTACTGGCCCATCACCTTCCAGAGGGACAGGAACTGGGACCAGCTCAAACTGTTCCTGGAGTACACGTGGTGTGTGGAAGTGAAGCAGCGCGCCGGCTGCCTGCCGCACCGCCACGACCCGCACGGCTTCCTCACCATGCTGGCGCAGTCGCTCACCCTGGACAAGGCCAACACCTGGTCCATCATCACCCAGAACATCGAGCTGTTCACCAACGACGACAAGATCCGCAGCTTCGCCAAGCGCTACCTGTGGGCGGAGGCGGCGCGCGGCTGCGGGGAGTGCGGGGAGTGCGGGGAGTGCGTGCCGGCGCAGCGGCGGCGGCGCGGGGGGCGGGGGGAGCCGCGCCTGTGGAGGCCGTGCGAGTGCCGCCGGTACTCCAAGGACGAGCAGGACTACGTGCAGGCGCTCAACATGGTCACCTACGAGTGCGTCGTCAAGGACATCCTGTGCGCTCTGCCCATATGGACTACTTTTTTGAAGATAATAAAGACAATGAAGACGGATCCGTCGGCGTACCACACGTGGCAGATGAAGCTGCTGCTGTCGCAGGTGGAGCAGCTCGACAAGCGCAGCACGGCCGAGATGAAGGTGGACGGGCTGGAGGCGCACAGCGAGCCGCTCGTCTCCGCGGAGTTCACGCTCGCCATCAAGCAGAAGGTGGCGCTCGCCTTCGACGCCTTCGAGCTGAGGCTGACCCCGTACCTGCGCAAGTACGTGGGCCTGCCGAGCAGCAGAGACTTCAATAACTGCGAGCCCTTGCTCAAGAAGGCCCTGTCCGCGTTCCTCGTGTACCACGACATCAAGCGGGGAGAGCTGCGGGGCTGCGCGGGGGAGGAGGGGGGCGCGCTGGTGCTGGCGGGGGGCGCGGGGGGCGCGGAGGGGGCGGCGCGGCTGGGGGCGCTGCTGCGGTGA

Protein

MAIHCTIGLLFLGGGRCTLSTTPTAVAALLAAFFPKFPTHSEDNRYHLQALRHLYVLAVEPRLLLPRDIDTGELCYAHIQVIDLQGSVRQMKAPCILPELDKLKEVKIDDPRYWPITFQRDRNWDQLKLFLEYTWCVEVKQRAGCLPHRHDPHGFLTMLAQSLTLDKANTWSIITQNIELFTNDDKIRSFAKRYLWAEAARGCGECGECGECVPAQRRRRGGRGEPRLWRPCECRRYSKDEQDYVQALNMVTYECVVKDILCALPIWTTFLKIIKTMKTDPSAYHTWQMKLLLSQVEQLDKRSTAEMKVDGLEAHSEPLVSAEFTLAIKQKVALAFDAFELRLTPYLRKYVGLPSSRDFNNCEPLLKKALSAFLVYHDIKRGELRGCAGEEGGALVLAGGAGGAEGAARLGALLR

Similarity

Belongs to the actin family.

Uniprot

H9JFI0   A0A2H1WJF9   A0A2A4J124   A0A2A4IZF2   A0A2W1BLK8   A0A3S2PDF4   + More
A0A2H1VG09   A0A212F7I4   A0A0N1I8P4   A0A2J7PG18   A0A1B6KQD3   A0A088ADG5   A0A0L7RJN4   A0A154P3R7   E9I9G6   E0W3D5   A0A1S4N2M7   A0A1B6GLR8   A0A158NA24   A0A195BCF4   E2BPT3   A0A026VVC7   A0A034VTD7   E2AF25   W8AY79   A0A0K8S4M4   W8BJL8   A0A1I8M2U1   A0A3Q0JJH9   A0A0T6B1F0   A0A146L0L1   A0A1B6DLM8   A0A1B6C0L0   A0A195DE25   F4WMK5   A0A0L0C836   K7IY40   A0A195C698   A0A0C9RW07   A0A232EZ56   A0A0A1XJ85   A0A0A9VWC5   A0A0K8V5I4   A0A1I8PXV2   A0A1J1HHT0   T1HSR7   A0A336L2N9   A0A023F131   Q960S7   A0A224XCW0   D6W9Y0   B4MSP4   A0A1A9WDA7   A0A1B0CGG2   A0A3B0JX42   A0A0M4F9X8   Q9VXV3   B4R578   A0A1W4WBK9   A0A1A9Z8K9   Q29G49   A0A1W4WBJ7   A0A1A9UM75   B4GVX5   B4ILT1   A0A0K8UGC8   B3NTL2   A0A1Y1M734   U4TZG6   B4L1T4   A0A1B0BY03   A0A1A9YIT5   W4VRJ4   A0A182GCA5   A0A1S3ICG9   Q17DU0   A0A2G8JLP4   A0A3S3PX00  

Pubmed

19121390    28756777    22118469    26354079    21282665    20566863    + More
21347285    20798317    24508170    25348373    24495485    25315136    26823975    21719571    26108605    20075255    28648823    25830018    25401762    25474469    18362917    19820115    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    15632085    28004739    23537049    26483478    17510324    29023486   

EMBL

BABH01035035    ODYU01009065    SOQ53215.1    NWSH01004418    PCG65140.1    PCG65141.1    + More
KZ150045    PZC74514.1    RSAL01000088    RVE48201.1    ODYU01002379    SOQ39800.1    AGBW02009869    OWR49697.1    KQ460326    KPJ15685.1    NEVH01025635    PNF15271.1    GEBQ01026324    JAT13653.1    KQ414581    KOC71008.1    KQ434803    KZC05984.1    GL761800    EFZ22804.1    DS235882    EEB20141.1    AAZO01007370    GECZ01006418    JAS63351.1    ADTU01001425    KQ976528    KYM81902.1    GL449658    EFN82284.1    KK107796    EZA47702.1    GAKP01014149    JAC44803.1    GL438984    EFN67980.1    GAMC01016752    JAB89803.1    GBRD01017586    JAG48241.1    GAMC01016751    JAB89804.1    LJIG01016335    KRT80910.1    GDHC01017120    JAQ01509.1    GEDC01010778    JAS26520.1    GEDC01030251    JAS07047.1    KQ980989    KYN10674.1    GL888217    EGI64616.1    JRES01000777    KNC28410.1    KQ978220    KYM96372.1    GBYB01013135    JAG82902.1    NNAY01001563    OXU23589.1    GBXI01003704    JAD10588.1    GBHO01043626    GBHO01043620    JAF99977.1    JAF99983.1    GDHF01018301    JAI34013.1    CVRI01000004    CRK87591.1    ACPB03016850    UFQS01001628    UFQT01001628    SSX11671.1    SSX31236.1    GBBI01003719    JAC14993.1    AY051879    AAK93303.1    GFTR01008808    JAW07618.1    KQ971312    EEZ99272.2    CH963851    EDW75133.2    AJWK01011082    AJWK01011083    OUUW01000003    SPP78319.1    CP012528    ALC49120.1    AE014298    AAF48455.1    CM000366    EDX17979.1    CH379064    EAL32261.2    CH479193    EDW26820.1    CH480888    EDW55381.1    GDHF01026653    JAI25661.1    CH954180    EDV47016.1    GEZM01042675    JAV79736.1    KB631692    ERL85403.1    CH933810    EDW06737.1    JXJN01022440    GANO01002231    JAB57640.1    JXUM01053998    JXUM01053999    KQ561800    KXJ77493.1    CH477291    EAT44572.1    MRZV01001641    PIK36645.1    NCKU01000017    NCKU01000016    RWS17915.1    RWS17930.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000007151    UP000053240    UP000235965    + More
UP000005203    UP000053825    UP000076502    UP000009046    UP000005205    UP000078540    UP000008237    UP000053097    UP000000311    UP000095301    UP000079169    UP000078492    UP000007755    UP000037069    UP000002358    UP000078542    UP000215335    UP000095300    UP000183832    UP000015103    UP000007266    UP000007798    UP000091820    UP000092461    UP000268350    UP000092553    UP000000803    UP000000304    UP000192223    UP000092445    UP000001819    UP000078200    UP000008744    UP000001292    UP000008711    UP000030742    UP000009192    UP000092460    UP000092443    UP000069940    UP000249989    UP000085678    UP000008820    UP000230750    UP000285301   

PRIDE

H9JFI0    Q960S7    Q9VXV3   

Pfam

PF18122   APC1_C        + More
PF12859   ANAPC1
PF01851   PC_rep
PF00022   Actin
PF03129   HGTP_anticodon
PF00587   tRNA-synt_2b

Interpro

IPR041221   APC1_C        + More
IPR024990   Apc1       
IPR002015   Proteasome/cyclosome_rpt       
IPR004000   Actin       
IPR020902   Actin/actin-like_CS       
IPR006195   aa-tRNA-synth_II       
IPR033730   ProRS_core_prok       
IPR004154   Anticodon-bd       
IPR036621   Anticodon-bd_dom_sf       
IPR002316   Pro-tRNA-ligase_IIa       
IPR002314   aa-tRNA-synt_IIb       
IPR011989   ARM-like       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       

SUPFAM

SSF57667   SSF57667       

Gene 3D

3.40.50.800     1.25.10.10    

CDD

cd00779  ProRS_core_prok

ProteinModelPortal

H9JFI0   A0A2H1WJF9   A0A2A4J124   A0A2A4IZF2   A0A2W1BLK8   A0A3S2PDF4   + More
A0A2H1VG09   A0A212F7I4   A0A0N1I8P4   A0A2J7PG18   A0A1B6KQD3   A0A088ADG5   A0A0L7RJN4   A0A154P3R7   E9I9G6   E0W3D5   A0A1S4N2M7   A0A1B6GLR8   A0A158NA24   A0A195BCF4   E2BPT3   A0A026VVC7   A0A034VTD7   E2AF25   W8AY79   A0A0K8S4M4   W8BJL8   A0A1I8M2U1   A0A3Q0JJH9   A0A0T6B1F0   A0A146L0L1   A0A1B6DLM8   A0A1B6C0L0   A0A195DE25   F4WMK5   A0A0L0C836   K7IY40   A0A195C698   A0A0C9RW07   A0A232EZ56   A0A0A1XJ85   A0A0A9VWC5   A0A0K8V5I4   A0A1I8PXV2   A0A1J1HHT0   T1HSR7   A0A336L2N9   A0A023F131   Q960S7   A0A224XCW0   D6W9Y0   B4MSP4   A0A1A9WDA7   A0A1B0CGG2   A0A3B0JX42   A0A0M4F9X8   Q9VXV3   B4R578   A0A1W4WBK9   A0A1A9Z8K9   Q29G49   A0A1W4WBJ7   A0A1A9UM75   B4GVX5   B4ILT1   A0A0K8UGC8   B3NTL2   A0A1Y1M734   U4TZG6   B4L1T4   A0A1B0BY03   A0A1A9YIT5   W4VRJ4   A0A182GCA5   A0A1S3ICG9   Q17DU0   A0A2G8JLP4   A0A3S3PX00  

PDB

4UI9     E-value=7.047e-31,     Score=334

KEGG

101739449    K03348 anaphase-promoting complex subunit 1 | (RefSeq) anaphase-promoting complex subunit 1-like

PATHWAY

04120    Ubiquitin mediated proteolysis - Bombyx mori (domestic silkworm)

GO

GO:0005680   GO:0016021   GO:0005524   GO:0006433   GO:0004827   GO:0005737   GO:0000278   GO:0061630   GO:0031145   GO:0048749   GO:0070979   GO:0007091   GO:0003676  

PANTHER

PTHR12827  

Length:

415

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

13.06617

Exp number, first 60 AAs:

12.98264

Total prob of N-in:

0.56730

POSSIBLE N-term signal

sequence

outside

1  -  415

 

 

Pi

397.508551

Theta

198.607685

Tajima's D

3.148313

CLR

0.245036

CSRT

0.983700814959252

Interpretation

Uncertain