Gene

KWMTBOMO10714

Pre Gene Modal

BGIBMGA008276

Annotation

PREDICTED:_anaphase-promoting_complex_subunit_1-like_[Bombyx_mori]

Location

Bomo_Chr18(+):1393755-1395623      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 0.948

CDS

ATGGAGGACAGCACTGACGCGTGTCGCTCGGCAGGCGGGCAGCGCGAGCGGTGCAAGCCGGGCGTGAACCTGGACGTGACGTCCCCGGGCGGCACGGTGGCGCTGGGCCTGCTGTACCTGCGCGCCGGCCGCCGCGCCCCCGCCGCCTGGCTGCAGCCGCCCGACACCGCCTACCAGCTCGACTACGTGCGCCCGGACCTGCTCATGCTCAGGGTCATCGCGCGAGGCCTAATGTTGTGGGACTCCATAGAAGCCAGCGAAGAGTGGATCGAGGATCAAGTTCCAGAAACGATAAAGCCATACTGCTTCGTCAAACCGACCGAGGACAACATCGATTATGAAGCTATGAACCAGGCGTACTGCAACATCGTGGCGGGCGCGGCGTTCGCGCTGGGGCTGCGGTTCGCGGGGTCGGGGGACGCGGACGCGCGCGACGCCGTGCTGCACCACGCGCGCGCGCTGGCCGCGCTGGCCGACACCGCGCTGGCCGAGCTGGCCGGCCGCTCCACGCTCGAGTACACGCTGTGCGTCTGTCTGCTGGCCGCCGGCATGGTGACTGTCCCCACACACTTACACCTTCAGGACTCAATCGATCGATTTCGAGAATCGTTGTGA

Protein

MEDSTDACRSAGGQRERCKPGVNLDVTSPGGTVALGLLYLRAGRRAPAAWLQPPDTAYQLDYVRPDLLMLRVIARGLMLWDSIEASEEWIEDQVPETIKPYCFVKPTEDNIDYEAMNQAYCNIVAGAAFALGLRFAGSGDADARDAVLHHARALAALADTALAELAGRSTLEYTLCVCLLAAGMVTVPTHLHLQDSIDRFRESL

Similarity

Belongs to the actin family.

Uniprot

H9JFH9   A0A3S2PDF4   A0A2H1VG09   A0A2A4J124   A0A2A4IZF2   A0A0N1I8P4   + More
A0A212F7I4   A0A194PDA3   A0A2J7PG08   A0A2J7PG18   A0A2J7PG02   D6W9Y0   A0A067QWC8   N6TRG3   A0A0K2U137   T1HSR7   A0A224XCW0   A0A023F131   A0A1B6GLR8   A0A1B6C0L0   E9I9G6   A0A1B6DLM8   A0A0M8ZZJ5   A0A195FVU0   F4WMK5   A0A195DE25   A0A158NA24   E2AF25   A0A195BCF4   A0A154P3R7   A0A0J7KII4   A0A088ADG5   A0A2A3EF48   A0A3Q0JJH9   A0A0L7RJN4   A0A026VVC7   A0A0T6B1F0   K7IY40   A0A232EZ56   T1J8K9   A0A0K8S4M4   A0A087US22   A0A146L0L1   E2BPT3   A0A2L2Y5Z7   A0A0A9VWC5   A0A1I8PXV2   E0W3D5   A0A1S4N2M7   A0A1A9WDA7   A0A0L0C836   A0A1I8M2U1  

Pubmed

19121390    26354079    22118469    18362917    19820115    24845553    + More
23537049    25474469    21282665    21719571    21347285    20798317    24508170    20075255    28648823    26823975    26561354    25401762    20566863    26108605    25315136   

EMBL

BABH01035035    RSAL01000088    RVE48201.1    ODYU01002379    SOQ39800.1    NWSH01004418    + More
PCG65140.1    PCG65141.1    KQ460326    KPJ15685.1    AGBW02009869    OWR49697.1    KQ459606    KPI90988.1    NEVH01025635    PNF15270.1    PNF15271.1    PNF15269.1    KQ971312    EEZ99272.2    KK853289    KDR08910.1    APGK01022688    APGK01022689    KB740442    ENN80643.1    HACA01014454    CDW31815.1    ACPB03016850    GFTR01008808    JAW07618.1    GBBI01003719    JAC14993.1    GECZ01006418    JAS63351.1    GEDC01030251    JAS07047.1    GL761800    EFZ22804.1    GEDC01010778    JAS26520.1    KQ435812    KOX72749.1    KQ981264    KYN43974.1    GL888217    EGI64616.1    KQ980989    KYN10674.1    ADTU01001425    GL438984    EFN67980.1    KQ976528    KYM81902.1    KQ434803    KZC05984.1    LBMM01007112    KMQ90031.1    KZ288271    PBC29829.1    KQ414581    KOC71008.1    KK107796    EZA47702.1    LJIG01016335    KRT80910.1    NNAY01001563    OXU23589.1    JH431956    GBRD01017586    JAG48241.1    KK121305    KFM80161.1    GDHC01017120    JAQ01509.1    GL449658    EFN82284.1    IAAA01014629    LAA03602.1    GBHO01043626    GBHO01043620    JAF99977.1    JAF99983.1    DS235882    EEB20141.1    AAZO01007370    JRES01000777    KNC28410.1   

Proteomes

UP000005204    UP000283053    UP000218220    UP000053240    UP000007151    UP000053268    + More
UP000235965    UP000007266    UP000027135    UP000019118    UP000015103    UP000053105    UP000078541    UP000007755    UP000078492    UP000005205    UP000000311    UP000078540    UP000076502    UP000036403    UP000005203    UP000242457    UP000079169    UP000053825    UP000053097    UP000002358    UP000215335    UP000054359    UP000008237    UP000095300    UP000009046    UP000091820    UP000037069    UP000095301   

PRIDE

H9JFH9   

Pfam

PF18122   APC1_C        + More
PF12859   ANAPC1
PF01851   PC_rep
PF00022   Actin
PF03129   HGTP_anticodon
PF00587   tRNA-synt_2b

Interpro

IPR024990   Apc1        + More
IPR041221   APC1_C       
IPR002015   Proteasome/cyclosome_rpt       
IPR004000   Actin       
IPR020902   Actin/actin-like_CS       
IPR004001   Actin_CS       
IPR006195   aa-tRNA-synth_II       
IPR033730   ProRS_core_prok       
IPR004154   Anticodon-bd       
IPR036621   Anticodon-bd_dom_sf       
IPR002316   Pro-tRNA-ligase_IIa       
IPR002314   aa-tRNA-synt_IIb       

Gene 3D

3.40.50.800    

CDD

cd00779  ProRS_core_prok

ProteinModelPortal

H9JFH9   A0A3S2PDF4   A0A2H1VG09   A0A2A4J124   A0A2A4IZF2   A0A0N1I8P4   + More
A0A212F7I4   A0A194PDA3   A0A2J7PG08   A0A2J7PG18   A0A2J7PG02   D6W9Y0   A0A067QWC8   N6TRG3   A0A0K2U137   T1HSR7   A0A224XCW0   A0A023F131   A0A1B6GLR8   A0A1B6C0L0   E9I9G6   A0A1B6DLM8   A0A0M8ZZJ5   A0A195FVU0   F4WMK5   A0A195DE25   A0A158NA24   E2AF25   A0A195BCF4   A0A154P3R7   A0A0J7KII4   A0A088ADG5   A0A2A3EF48   A0A3Q0JJH9   A0A0L7RJN4   A0A026VVC7   A0A0T6B1F0   K7IY40   A0A232EZ56   T1J8K9   A0A0K8S4M4   A0A087US22   A0A146L0L1   E2BPT3   A0A2L2Y5Z7   A0A0A9VWC5   A0A1I8PXV2   E0W3D5   A0A1S4N2M7   A0A1A9WDA7   A0A0L0C836   A0A1I8M2U1  

PDB

5A31     E-value=4.27664e-15,     Score=194

KEGG

101739449    K03348 anaphase-promoting complex subunit 1 | (RefSeq) anaphase-promoting complex subunit 1-like

GO

GO:0005680   GO:0016021   GO:0031145   GO:0070979   GO:0007091   GO:0005524   GO:0006433   GO:0004827   GO:0005737  

PANTHER

PTHR12827  

Length:

204

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

16.69776

Exp number, first 60 AAs:

2.15697

Total prob of N-in:

0.57987

outside

1  -  204

 

 

Pi

302.301188

Theta

136.893513

Tajima's D

3.955598

CLR

0

CSRT

0.998650067496625

Interpretation

Uncertain