Gene

KWMTBOMO10712

Pre Gene Modal

BGIBMGA008274

Annotation

PREDICTED:_HMG_box_transcription_factor_BBX_isoform_X1_[Amyelois_transitella]

Location

Bomo_Chr18(+):1338345-1357418      View in EpiBrowser

Transcription factor

HMG

Location in the cell

Nuclear   Reliability : 4.735

CDS

ATGTATGAACAGGAGGCTGAATCGGAGCCGGCGCATCACGCGCGTCGTCCCATGAACGCCTTCCTTATATTCTGCAAGCGGCACAGGAGCGTCGTGCGGGATAAATATCCTAATTTGGAGAACAGGTCAATAACTAAGATCCTCGGAGAGTGGTGGGCCAACTTGGACAAAGAAGAGAAAGCTTGTTACACAGGTCTTGCTAAACAGTACAAAGATGCTTTCTTCAGCGCCAATCCCGACTTCAAGTGGTACAAGTTGCCCGCGCCGCCGCTCCGCACGCTCTCCTCTCGACCCAGAGATGTTCCCGACAAACCGGCTGTTTCGCCCCACGCTGACCAACACGAAATCGAACTAGAGAGAACCAACAATAATTCCACAAGAGTCGACCTCAACAAAAAGACTATTATTGTACCTTATGAACACGAACCGAAATTGTCGATGTTCACACCTGGGAAACTAGCTGACGAAGCCCAAATGGGAGGCCTCAGCAGTCTCTTAGCTACTAAGACTGAACCACAAACGCCTAACCCCTACTATTCGCCTCCGAGCTTTAAGTACAACACGATCTCAAATCCGAACGAAATCAGATCTCTTAAACTATTAGATGCAGCCAGATCGAAGGGTGCTAACAGGGAAGACAGTATACGCGAGCTCCAGAATGCTCTTAACGAGACAACTAGGGTCTTTGAAGAAGAATTCGACGCTGAAAAGGCTAATATGTACGTCCATACCCCACAGAACGAGTTTACTAATCAAGATGTGATCGACCAAATTGTAGATAAGAGGTACTGCGGAGACGAATATGGTTATAATAGAAATGGATCTGATGACGAAAGAATGAGATCGGGTAGGTCATGTAAAGGGAAGAGGTACCAGGAATTCATGGCAGTAGGGGGTTTGATAGTCAACAAGCGACAGAAGAGGGAGCCGGGTGATCGTATGCCAGACGATAGCTACAACGCAGCGTGCAGCTGGGAATCTGGCAATTCGTTCTCTGACGAGTCCAAAACCGCTTCAAATGAGACCTCGCTGGAGGAAAACAAGATCGATCCGAACGAAACGCCCGATACTGACAATAATCCAAACAAAACATTCAAGGCTGCCGACTTTGACTTAGACGCTAAAATAAGAGCGTTGCCCTCGCTCAGCCTCGAGAAGTTCCAGCAGAAGAAACGGGAAAACAAGAGGAAGAAGAAATCGTTGAGCGTTCGCCCGAAAGTGTACGAGTCTCCCGTCATCATCAACTCTGTAGCGCGACCCGTCATGGACGAGAGGCGGGATATGGCGGAGAACTGGCGCGAAACGGTCATCGGTAGCCAAAAACGGAAGCCAAGGAAAATCAGCATAACGAGACTCGAGATCAACAGCTGCGTCACCAACATAGACAGCAATCACGTCCACAAGATCAGTCCCGAGATAAAAATCGCCACCGAAGCACCCAGCACGGTGCTTCAGAGCATGGACATGTGCAAACAAGACCCGACGCACGACGTTGACTTATTAGCTCTGGCGACACTGGCCGAAGTGGCTGCAAATACTTCGAAACTCGAAGACTCGTCTATTGAAAACATGTCGGTCAAAATGAGCGAAGGCAACGCTTCCACGGTATAA

Protein

MYEQEAESEPAHHARRPMNAFLIFCKRHRSVVRDKYPNLENRSITKILGEWWANLDKEEKACYTGLAKQYKDAFFSANPDFKWYKLPAPPLRTLSSRPRDVPDKPAVSPHADQHEIELERTNNNSTRVDLNKKTIIVPYEHEPKLSMFTPGKLADEAQMGGLSSLLATKTEPQTPNPYYSPPSFKYNTISNPNEIRSLKLLDAARSKGANREDSIRELQNALNETTRVFEEEFDAEKANMYVHTPQNEFTNQDVIDQIVDKRYCGDEYGYNRNGSDDERMRSGRSCKGKRYQEFMAVGGLIVNKRQKREPGDRMPDDSYNAACSWESGNSFSDESKTASNETSLEENKIDPNETPDTDNNPNKTFKAADFDLDAKIRALPSLSLEKFQQKKRENKRKKKSLSVRPKVYESPVIINSVARPVMDERRDMAENWRETVIGSQKRKPRKISITRLEINSCVTNIDSNHVHKISPEIKIATEAPSTVLQSMDMCKQDPTHDVDLLALATLAEVAANTSKLEDSSIENMSVKMSEGNASTV

Uniprot

H9JFH7   A0A3S2L8N1   A0A2A4IZT2   A0A2H1VG93   A0A2W1BRX4   A0A0N1IPI1   + More
A0A194PE71   A0A1E1WPN2   A0A212F7J7   A0A0L7LF69   A0A336K7M1   A0A336LZL1   A0A232EH54   A0A0T6B8A8   A0A0J7L9I4   A0A0N0U7I9   B0WGI8   A0A026VVL1   A0A154PJE1   E9ILI7   Q16QX2   A0A088AAM5   A0A158NQG1   A0A195B6Q2   A0A3L8D4G8   A0A2A3E3P3   A0A195EKZ3   Q16QX1   F4WCK1   A0A0K8U8Q6   E2C1I2   A0A0C9QZ98   A0A0C9PZU6   A0A0A1X0A3   W8BAB1   A0A0L7QNZ1   B4MAZ8   B4NCH4   A0A195C3U4   O61348   B3NYD9   B4I6H3   A0A1A9YNV2   A0A1B0APM1   B4PZ35  

Pubmed

19121390    28756777    26354079    22118469    26227816    28648823    + More
24508170    21282665    17510324    21347285    30249741    21719571    20798317    25830018    24495485    17994087    8582612    9144213    9520435    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    18057021    17550304   

EMBL

BABH01035033    RSAL01000088    RVE48205.1    NWSH01004418    PCG65139.1    ODYU01002379    + More
SOQ39801.1    KZ150045    PZC74513.1    KQ460326    KPJ15686.1    KQ459606    KPI90989.1    GDQN01002116    JAT88938.1    AGBW02009869    OWR49698.1    JTDY01001348    KOB74112.1    UFQS01000056    UFQT01000056    SSW98753.1    SSX19139.1    SSW98752.1    SSX19138.1    NNAY01004612    OXU17661.1    LJIG01009192    KRT83571.1    LBMM01000123    KMR04841.1    KQ435695    KOX80871.1    DS231926    EDS26985.1    KK107796    EZA47685.1    KQ434908    KZC11310.1    GL764086    EFZ18571.1    CH477729    EAT36779.1    ADTU01001807    KQ976582    KYM79864.1    QOIP01000013    RLU15139.1    KZ288392    PBC26335.1    KQ978739    KYN28903.1    EAT36780.1    GL888070    EGI68181.1    GDHF01029272    JAI23042.1    GL451937    EFN78158.1    GBYB01009119    JAG78886.1    GBYB01007078    JAG76845.1    GBXI01014773    GBXI01014606    GBXI01013351    GBXI01009548    GBXI01005956    JAC99518.1    JAC99685.1    JAD00941.1    JAD04744.1    JAD08336.1    GAMC01012592    GAMC01012591    GAMC01012589    GAMC01012588    GAMC01012587    JAB93968.1    KQ414843    KOC60337.1    CH940655    EDW66407.2    CH964239    EDW82533.2    KQ978292    KYM95527.1    AF017777    AE014298    AY094952    AAC28404.1    AAF50823.1    AAM11305.1    AAN09678.1    AGB95608.1    AGB95609.1    CH954180    EDV47618.1    KQS30578.1    CH480823    EDW56379.1    JXJN01001483    CM000162    EDX03096.1    KRK07110.1    KRK07111.1   

Proteomes

UP000005204    UP000283053    UP000218220    UP000053240    UP000053268    UP000007151    + More
UP000037510    UP000215335    UP000036403    UP000053105    UP000002320    UP000053097    UP000076502    UP000008820    UP000005203    UP000005205    UP000078540    UP000279307    UP000242457    UP000078492    UP000007755    UP000008237    UP000053825    UP000008792    UP000007798    UP000078542    UP000000803    UP000008711    UP000001292    UP000092443    UP000092460    UP000002282   

PRIDE

H9JFH7    O61348   

Pfam

PF00505   HMG_box

Interpro

IPR009071   HMG_box_dom        + More
IPR036910   HMG_box_dom_sf       

SUPFAM

SSF47095   SSF47095       

Gene 3D

1.10.30.10    

ProteinModelPortal

H9JFH7   A0A3S2L8N1   A0A2A4IZT2   A0A2H1VG93   A0A2W1BRX4   A0A0N1IPI1   + More
A0A194PE71   A0A1E1WPN2   A0A212F7J7   A0A0L7LF69   A0A336K7M1   A0A336LZL1   A0A232EH54   A0A0T6B8A8   A0A0J7L9I4   A0A0N0U7I9   B0WGI8   A0A026VVL1   A0A154PJE1   E9ILI7   Q16QX2   A0A088AAM5   A0A158NQG1   A0A195B6Q2   A0A3L8D4G8   A0A2A3E3P3   A0A195EKZ3   Q16QX1   F4WCK1   A0A0K8U8Q6   E2C1I2   A0A0C9QZ98   A0A0C9PZU6   A0A0A1X0A3   W8BAB1   A0A0L7QNZ1   B4MAZ8   B4NCH4   A0A195C3U4   O61348   B3NYD9   B4I6H3   A0A1A9YNV2   A0A1B0APM1   B4PZ35  

PDB

1WZ6     E-value=9.93942e-21,     Score=248

KEGG

101739168    K21643 HMG box transcription factor BBX | (RefSeq) uncharacterized LOC101739168

GO

GO:0003677   GO:0005634  

Length:

536

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00091

outside

1  -  536

 

 

Pi

249.168246

Theta

174.542758

Tajima's D

1.134721

CLR

0.009988

CSRT

0.700614969251537

Interpretation

Uncertain