Gene

KWMTBOMO10701

Pre Gene Modal

BGIBMGA008244

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_xanthine_dehydrogenase_1-like_[Bombyx_mori]

Location

Bomo_Chr18(-):770339-772859      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.009 Extracellular   Reliability : 1.397 Nuclear   Reliability : 1.294

CDS

ATGTGTCGTGAGGCTGGGTGCGGAGCTTGCATTGTGTCTGTCGTCAAATGCCCAGGAGGACCGGTCGAAGCTGTTAATTCGTGTATGGTATCAATTACGTCATGTCAAGATTGGGAAATTACAACGATAGAAGAATTGGGGAACAGAAACAAAGGGTACAACGTTCTACAGAAGACTTTGGCTGATTATAATGGGACCCAATGTGGGTATTGCTCTCCAGCTTGGGTCATGGCGATGCACAGTCTCCTCAAAGGCAACAATGATTTAACGATGCTAGAAATAGAGAAATCCCTCAGCAGCAATGTCTGCAGATGTACTGGCTACAGACCCATATTGGACGCCTTCAAAAAATTTGCCAAAGACTGCCCTAAAGAGCATAGAATTTTAGACATAGAAGATTTGACTATCTGTAAGAGAACTGGTAAAAAATGTGATAAGAGTAATTGTAATGACGAAGACTGGTGCATAATTGAAAAAGAAGAATACAAGGCCGAGGGTATTATAGAAATACCGTTGCATGACAATAAATATTGGTACCGTGTTACGAATGTTGATGATATATTCAAAATTCTTAATCAGAAAGGATATGACTCATATATGCTGGTCTTTGGGAATACGGCTAAAGGTGCATATCCAATCTTCGAATATCCGAAAGTATTGATTGATATTAGCGCTGTAGCCCAATTAAAGATTTGCCTTTATGACCAGAATTTAGTAGTAGGTGTTGGATTGACGCTTACCGAATTATTGAATACTTTCGAGACAGCTTCAAAGGAAGAATACTTCAAGTACCTGAGGAAGCTTTACGAACATTTGTTATTGGTCGCCCACATACCCGTCAGAAATGTATGTAAATCGATACTAAGTTGTATGTTGTATCAAAAACGAAATCCATACAATAAGTAA

Protein

MCREAGCGACIVSVVKCPGGPVEAVNSCMVSITSCQDWEITTIEELGNRNKGYNVLQKTLADYNGTQCGYCSPAWVMAMHSLLKGNNDLTMLEIEKSLSSNVCRCTGYRPILDAFKKFAKDCPKEHRILDIEDLTICKRTGKKCDKSNCNDEDWCIIEKEEYKAEGIIEIPLHDNKYWYRVTNVDDIFKILNQKGYDSYMLVFGNTAKGAYPIFEYPKVLIDISAVAQLKICLYDQNLVVGVGLTLTELLNTFETASKEEYFKYLRKLYEHLLLVAHIPVRNVCKSILSCMLYQKRNPYNK

Cofactor

FAD
Mo-molybdopterin
[2Fe-2S] cluster

Uniprot

H9JFE7   A0A2W1BGZ9   A0A0N0PD45   A0A2H1VZA4   A0A3S2PBH0   A0A2W1BJJ3   + More
A0A0L7L4E9   A0A2A4IRV9   A0A2A4ISI6   A0A2A4ITB4   A0A0F7QIE4   A0A2H1V6B6   A0A194PE80   A0A2H1V2I4   A0A3S2M0B9   A0A0N0PDI7   A0A2W1BIK1   A0A2A4JU78   A0A194PCQ5   A0A212EVU1   A0A2H1VA65   A0A194PDB3   A0A194PIT3   A0A2A4JUF7   A0A0N1IAK3   A0A3S2NDD1   A0A1X9ZM11   A0A0L7L438   A0A2W1BIE3   A0A2W1BHI1   A0A212FI14   A0A2A4ITG3   H9JFH1   A0A0L7L4A2   A0A1X9ZM28   A0A2H1VDX2   A0A194QBY5   A0A0L7L3S0   A0A0N0PF58   A0A194QUG5   A0A212EZ25   A0A2A4IZZ7   A0A2H1WKN9   A0A0H4TD12   A0A2H1VSX5   A0A2H1VA49   A0A194PIN2   A0A076FRM9   A0A0F7QIE0   A0A1L8D6P5   Q4VGM3   A0A0F7QEA3   A0A3S2P6B3   A0A2H1WDE7   A0A2H1VCW8   A0A1L8D6Q4   A0A2A4KA50   A0A1X9ZM23   A0A212FKB8   A0A212F791   A0A2H1VH28   A0A194PDZ5   A0A194PCA1   S5FPI8   A0A194QM53   A0A2A4JXM9   A0A1U9X1S0   A0A0F7QJV6   A0A2A4JYR8   A0A0F7QEA1   A0A2H1V7P8   A0A0H4TY60   H9JFZ8   H9JFZ2   A8TUB4   A0A194QMP0   A0A076FX80   A0A1B6G9B1   A0A0A9YA60   A0A1X9ZLZ6   A0A0N1I7K2   A0A3S2NMY0   A0A1B6E3D0   A0A146L5G6   A0A0A9YHM8   A0A146MB53   A0A154PJ92   A0A336MA50   T1HWZ8   H9JFZ3   A0A2A4JX39   A0A076FRA1   A0A1B6I539   A8TUC0   K7ITY0   A0A1Y9H2G7   A0A023F0C3   W5JCY6  

Pubmed

19121390    28756777    26354079    26227816    25803580    22118469    + More
26778204    24817326    15896291    23826341    17904312    25401762    26823975    20075255    25474469    20920257    23761445   

EMBL

BABH01034979    BABH01034980    BABH01034981    KZ150135    PZC72995.1    KQ460326    + More
KPJ15694.1    ODYU01005369    SOQ46133.1    RSAL01000123    RVE46648.1    PZC72996.1    JTDY01003022    KOB70290.1    NWSH01007964    PCG62737.1    PCG62735.1    PCG62736.1    LC017759    BAR64773.1    ODYU01000882    SOQ36316.1    KQ459606    KPI90999.1    ODYU01000376    SOQ35055.1    RSAL01000088    RVE48203.1    KPJ15692.1    KZ150165    PZC72656.1    NWSH01000648    PCG75033.1    KPI90997.1    AGBW02012116    OWR45615.1    ODYU01001481    SOQ37735.1    KPI90998.1    KPI91000.1    PCG75032.1    KPJ15693.1    RVE48202.1    KY595781    ARS46835.1    JTDY01003130    KOB70096.1    PZC72997.1    PZC72657.1    AGBW02008446    OWR53382.1    NWSH01007172    PCG63055.1    BABH01034958    BABH01034959    BABH01034960    BABH01034961    BABH01034962    BABH01034963    BABH01034964    BABH01034965    JTDY01003017    KOB70302.1    KY595780    ARS46834.1    ODYU01002030    SOQ39029.1    KQ459193    KPJ03063.1    JTDY01003126    KOB70107.1    KQ459674    KPJ20482.1    KQ461154    KPJ08620.1    AGBW02011403    OWR46707.1    NWSH01004179    PCG65395.1    ODYU01009314    SOQ53643.1    KP899546    AKQ06145.1    ODYU01004253    SOQ43930.1    ODYU01001472    SOQ37709.1    KPI90950.1    KF960796    AII21998.1    LC017754    BAR64768.1    GEYN01000003    JAV02126.1    AY947538    AAY22446.1    LC017757    BAR64771.1    RSAL01000295    RVE42846.1    ODYU01007852    SOQ50986.1    ODYU01001878    SOQ38698.1    GEYN01000001    JAV02128.1    NWSH01000022    PCG80663.1    KY595779    ARS46833.1    AGBW02008082    OWR54176.1    AGBW02009901    OWR49607.1    ODYU01002537    SOQ40155.1    KPI90909.1    KPI90901.1    KC952900    AGQ43599.1    KQ461196    KPJ06623.1    NWSH01000413    PCG76559.1    KY643683    AQY62686.1    LC017753    BAR64767.1    PCG76560.1    LC017752    BAR64766.1    ODYU01001109    SOQ36868.1    KP899547    AKQ06146.1    BABH01001678    BABH01001679    BABH01001657    BABH01001658    BABH01001659    BABH01001660    EU073423    ABW71271.1    KPJ06614.1    KF960794    AII21996.1    GECZ01010778    JAS58991.1    GBHO01014555    GBHO01014552    JAG29049.1    JAG29052.1    KY595778    ARS46832.1    KQ460556    KPJ13979.1    RSAL01000229    RVE43893.1    GEDC01004862    JAS32436.1    GDHC01015520    JAQ03109.1    GBHO01014557    GBHO01014554    GBRD01002756    JAG29047.1    JAG29050.1    JAG63065.1    GDHC01013650    GDHC01001960    JAQ04979.1    JAQ16669.1    KQ434912    KZC11368.1    UFQS01000745    UFQT01000745    SSX06553.1    SSX26900.1    ACPB03000354    ACPB03000355    BABH01001661    PCG76561.1    KF960795    AII21997.1    GECU01025650    JAS82056.1    EU073424    ABW71272.1    GBBI01004413    JAC14299.1    ADMH02001746    ETN61218.1   

Proteomes

UP000005204    UP000053240    UP000283053    UP000037510    UP000218220    UP000053268    + More
UP000007151    UP000076502    UP000015103    UP000002358    UP000075884    UP000000673   

PRIDE

H9JFE7    H9JFH1    H9JFZ8    H9JFZ2    A8TUB4    H9JFZ3    + More
A8TUC0   

Pfam

PF01315   Ald_Xan_dh_C        + More
PF03450   CO_deh_flav_C
PF02738   Ald_Xan_dh_C2
PF01799   Fer2_2
PF00941   FAD_binding_5
PF00111   Fer2
PF00271   Helicase_C
PF01130   CD36

Interpro

IPR002888   2Fe-2S-bd        + More
IPR016208   Ald_Oxase/xanthine_DH       
IPR000674   Ald_Oxase/Xan_DH_a/b       
IPR036318   FAD-bd_PCMH-like_sf       
IPR036884   2Fe-2S-bd_dom_sf       
IPR008274   AldOxase/xan_DH_Mopterin-bd       
IPR005107   CO_DH_flav_C       
IPR001041   2Fe-2S_ferredoxin-type       
IPR036010   2Fe-2S_ferredoxin-like_sf       
IPR036683   CO_DH_flav_C_dom_sf       
IPR006058   2Fe2S_fd_BS       
IPR016166   FAD-bd_PCMH       
IPR037165   AldOxase/xan_DH_Mopterin-bd_sf       
IPR002346   Mopterin_DH_FAD-bd       
IPR036856   Ald_Oxase/Xan_DH_a/b_sf       
IPR012675   Beta-grasp_dom_sf       
IPR016169   FAD-bd_PCMH_sub2       
IPR027417   P-loop_NTPase       
IPR002464   DNA/RNA_helicase_DEAH_CS       
IPR014001   Helicase_ATP-bd       
IPR001650   Helicase_C       
IPR002159   CD36_fam       

SUPFAM

SSF55447   SSF55447        + More
SSF56176   SSF56176       
SSF56003   SSF56003       
SSF47741   SSF47741       
SSF54665   SSF54665       
SSF54292   SSF54292       
SSF52540   SSF52540       

Gene 3D

3.10.20.30     3.30.465.10    

CDD

cd00207  fer2
cd00079  HELICc

ProteinModelPortal

H9JFE7   A0A2W1BGZ9   A0A0N0PD45   A0A2H1VZA4   A0A3S2PBH0   A0A2W1BJJ3   + More
A0A0L7L4E9   A0A2A4IRV9   A0A2A4ISI6   A0A2A4ITB4   A0A0F7QIE4   A0A2H1V6B6   A0A194PE80   A0A2H1V2I4   A0A3S2M0B9   A0A0N0PDI7   A0A2W1BIK1   A0A2A4JU78   A0A194PCQ5   A0A212EVU1   A0A2H1VA65   A0A194PDB3   A0A194PIT3   A0A2A4JUF7   A0A0N1IAK3   A0A3S2NDD1   A0A1X9ZM11   A0A0L7L438   A0A2W1BIE3   A0A2W1BHI1   A0A212FI14   A0A2A4ITG3   H9JFH1   A0A0L7L4A2   A0A1X9ZM28   A0A2H1VDX2   A0A194QBY5   A0A0L7L3S0   A0A0N0PF58   A0A194QUG5   A0A212EZ25   A0A2A4IZZ7   A0A2H1WKN9   A0A0H4TD12   A0A2H1VSX5   A0A2H1VA49   A0A194PIN2   A0A076FRM9   A0A0F7QIE0   A0A1L8D6P5   Q4VGM3   A0A0F7QEA3   A0A3S2P6B3   A0A2H1WDE7   A0A2H1VCW8   A0A1L8D6Q4   A0A2A4KA50   A0A1X9ZM23   A0A212FKB8   A0A212F791   A0A2H1VH28   A0A194PDZ5   A0A194PCA1   S5FPI8   A0A194QM53   A0A2A4JXM9   A0A1U9X1S0   A0A0F7QJV6   A0A2A4JYR8   A0A0F7QEA1   A0A2H1V7P8   A0A0H4TY60   H9JFZ8   H9JFZ2   A8TUB4   A0A194QMP0   A0A076FX80   A0A1B6G9B1   A0A0A9YA60   A0A1X9ZLZ6   A0A0N1I7K2   A0A3S2NMY0   A0A1B6E3D0   A0A146L5G6   A0A0A9YHM8   A0A146MB53   A0A154PJ92   A0A336MA50   T1HWZ8   H9JFZ3   A0A2A4JX39   A0A076FRA1   A0A1B6I539   A8TUC0   K7ITY0   A0A1Y9H2G7   A0A023F0C3   W5JCY6  

PDB

4YTZ     E-value=1.05531e-21,     Score=254

KEGG

101738607    K00106 xanthine dehydrogenase/oxidase [EC:1.17.1.4 1.17.3.2] | (RefSeq) xanthine dehydrogenase 1-lik

PATHWAY

00230    Purine metabolism - Bombyx mori (domestic silkworm)
00232    Caffeine metabolism - Bombyx mori (domestic silkworm)
00983    Drug metabolism - other enzymes - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)
04146    Peroxisome - Bombyx mori (domestic silkworm)

GO

GO:0005506   GO:0051537   GO:0009055   GO:0071949   GO:0046872   GO:0050660   GO:0016491   GO:0016021   GO:0102797   GO:0004031   GO:0102798   GO:0003824   GO:0016614   GO:0051536   GO:0055114  

Length:

301

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.20257

Exp number, first 60 AAs:

0.01287

Total prob of N-in:

0.08122

outside

1  -  301

 

 

Pi

35.408983

Theta

53.474056

Tajima's D

0.019145

CLR

0.647227

CSRT

0.373531323433828

Interpretation

Uncertain