Gene

KWMTBOMO10700

Pre Gene Modal

BGIBMGA008244

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_xanthine_dehydrogenase_1-like_[Bombyx_mori]

Location

Bomo_Chr18(-):761942-765299      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.823

CDS

ATGCCGCGATCACAGAGCGCTCATGCGATCGTCAACGCAGCGTACCTATACAAACTGAATAGCAACGGCACGGTGATAGAGTGCAGAATCAGCTACGGAGGTCTATCTTCACAATTTACCAGAGCTTTCGCGACTGAAAGCTTCTTAGTCGGTAAAGCTCTCTTCACGAACAACACTCTACAGAGAGCTCTTAATATACTGAAAAACGAACTGGTCGTGACAGAGATGCCGCCTGAACCTTCGGCAAAATATAGAGAGAAATTAGCTTTGAATCTATTTTATAAGGGACTCCTAACGCTTTGTCCAAACAATCAGCTGAATTCCCGCTATCGATCAGGTGCTATTAAGATCCATGAGACACGACCCGTATCCGAAGGCAGACAAATCTTTGACACCAATCCTACGGAATGGCCTTTAGGTCAACCCATACCCAAAGTTGAGGCTTTGATCCAATGCGCTGGAGAAGCCCATTTTTCTGAAGACATACCAACCTTACCTCGTGAAGTGTTTGCCGCTTTTGCATTGAGTACAATATCTAAAGGAGACCTTGTGAAAATAGATCCATCTCAAGCTCTGAACGTACCCGGAGTGATTGCATTTTACTCAGCGAAGGACATTCCTGGTGAAAATTCCTTTACACCAGCTCAAACTCTATTTTACATTGCTAACGAAGAAGTCTTCTGCAGCAGCAAAGTTGAATATTTCAATCAACCCATAGGAATGATTGTAGCGGAGACCCAACAAATAGCTGACCGTGCAGCCAAACTGGTGAAGGCTAAATATGCCAACATTAAAAAACCAGTCATAGACATCAAAGAAGCTAAGAAGGATCCGAAAAGGAATACTTTGTTTACTTCTATGGAAGCAACAGACAGAGGTACCGATGTAGTCAAACTTATTAAAGGCAGTAACACAATTTATGGTCAGTACCATTTTATGATGGAGAATTTGAGCTGTGTGACTAAGCCTACAGAAGAGGGTTTGGAAGTCCACTCAGCCACACAATGGATGGATGGAACCCAGGTCATGATTTCAAAGGCATTGAATATTGACTGCAATCGGATCGATGTGCATGTTAGACGTCTCGGAGGAGCTTATGGCATGAAGATTTCTCGCCCAATCCAAGTAGCGATCGCCTGCAGTCTTGCTGTTCAGAAGTTGAACAGACCCTGCCGATTTATTCAGTCGTTGACCACCACCACGAGGGCTATTGGAAAAAGACTTCCGTGCTCTACCGATTTCGAGGTATTTCCGATATGTTTAACATCAATAAATAGTAATTATGGTACCGCCTCCTGGAGACTTACTTTCTAA

Protein

MPRSQSAHAIVNAAYLYKLNSNGTVIECRISYGGLSSQFTRAFATESFLVGKALFTNNTLQRALNILKNELVVTEMPPEPSAKYREKLALNLFYKGLLTLCPNNQLNSRYRSGAIKIHETRPVSEGRQIFDTNPTEWPLGQPIPKVEALIQCAGEAHFSEDIPTLPREVFAAFALSTISKGDLVKIDPSQALNVPGVIAFYSAKDIPGENSFTPAQTLFYIANEEVFCSSKVEYFNQPIGMIVAETQQIADRAAKLVKAKYANIKKPVIDIKEAKKDPKRNTLFTSMEATDRGTDVVKLIKGSNTIYGQYHFMMENLSCVTKPTEEGLEVHSATQWMDGTQVMISKALNIDCNRIDVHVRRLGGAYGMKISRPIQVAIACSLAVQKLNRPCRFIQSLTTTTRAIGKRLPCSTDFEVFPICLTSINSNYGTASWRLTF

Cofactor

FAD
Mo-molybdopterin
[2Fe-2S] cluster

Uniprot

H9JFE7   A0A2A4JU78   A0A2H1VNQ0   A0A3S2PBH0   A0A2A4ITB4   A0A2W1BG03   + More
A0A2W1BJJ3   A0A2W1BIK1   A0A194PIT3   A0A0N1IAK3   A0A2A4JUF7   A0A194PE80   A0A0L7L4E9   A0A0L7L3S0   A0A2A4IRV9   A0A194PDB3   A0A2W1BIE3   A0A2H1V2I4   A0A0N0PD45   A0A0F7QHK5   A0A2H1V6B6   A0A1X9ZM11   A0A2H1VA65   A0A2A4ISI6   A0A194PCQ5   H9JFH1   A0A3S2NDD1   A0A2H1VEC0   A0A0F7QJW1   A0A1X9ZM28   A0A0N0PF58   H9JFX1   A0A194QCB6   A0A194QUG5   A0A212EZ25   A0A2H1W0Z2   A0A0N0PDI7   A0A0L7L4A2   A0A2A4ITG3   A0A3S2KXA4   A0A194QBY5   A0A0F7QJV6   A0A2A4JXM9   A0A2A4JYR8   A0A1X9ZM23   A0A194QM53   A8TUB4   A0A3S2NMY0   A0A2A4JB30   A0A3S2NTK8   A0A0L7LLP8   H9JFZ2   A0A2A4JX39   A0A2A4JY06   A0A0H4TY60   A0A212F2C6   A0A076FRA1   A0A067QY40   A0A1J1J970   A0A194PDZ5   A0A1U9X1S0   A0A0H4TD12   A0A076FX80   A0A2H1VCW8   A0A2H1VSX5   A0A2H1VH28   A0A1L8D6P5   S5FPI8   A0A076FRM9   A0A194PCA1   A0A194QMP0   A0A2J7R4N3   A0A0F7QIE0   A0A1Q3FSG4   E2BEN6   A0A0N0BES0   A0A1X9ZLZ6   A0A2A3E4V2   V9IH93   B0X3W2   A0A3S2P6B3   A0A087ZYD0   A0A182LLK4   B0X3X6   A0A2H1VIZ6   B0X3W4   A0A212FKB8   Q177D7   A0A182J4M1   A0A0N1I7K2   A0A2H1VUX4   Q177D6   A0A182QVB6   A0A2H1WR31   T1HPX4   V5GUW9   A0A0F7QEA1   A0A182GGE1   D7EK61  

Pubmed

19121390    28756777    26354079    26227816    25803580    22118469    + More
17904312    26778204    24817326    24845553    23826341    20798317    20966253    17510324    26483478    18362917    19820115   

EMBL

BABH01034979    BABH01034980    BABH01034981    NWSH01000648    PCG75033.1    ODYU01003306    + More
SOQ41884.1    RSAL01000123    RVE46648.1    NWSH01007964    PCG62736.1    KZ150165    PZC72655.1    KZ150135    PZC72996.1    PZC72656.1    KQ459606    KPI91000.1    KQ460326    KPJ15693.1    PCG75032.1    KPI90999.1    JTDY01003022    KOB70290.1    JTDY01003126    KOB70107.1    PCG62737.1    KPI90998.1    PZC72997.1    ODYU01000376    SOQ35055.1    KPJ15694.1    LC017755    BAR64769.1    ODYU01000882    SOQ36316.1    KY595781    ARS46835.1    ODYU01001481    SOQ37735.1    PCG62735.1    KPI90997.1    BABH01034958    BABH01034959    BABH01034960    BABH01034961    BABH01034962    BABH01034963    BABH01034964    BABH01034965    RSAL01000088    RVE48202.1    ODYU01002094    SOQ39169.1    LC017758    BAR64772.1    KY595780    ARS46834.1    KQ459674    KPJ20482.1    BABH01001558    KQ459193    KPJ03064.1    KQ461154    KPJ08620.1    AGBW02011403    OWR46707.1    ODYU01005636    SOQ46683.1    KPJ15692.1    JTDY01003017    KOB70302.1    NWSH01007172    PCG63055.1    RSAL01001905    RVE40636.1    KPJ03063.1    LC017753    BAR64767.1    NWSH01000413    PCG76559.1    PCG76560.1    KY595779    ARS46833.1    KQ461196    KPJ06623.1    EU073423    ABW71271.1    RSAL01000229    RVE43893.1    NWSH01002143    PCG69059.1    RVE48204.1    JTDY01000607    KOB76483.1    BABH01001657    BABH01001658    BABH01001659    BABH01001660    PCG76561.1    PCG76558.1    KP899547    AKQ06146.1    AGBW02010767    OWR47879.1    KF960795    AII21997.1    KK852888    KDR14320.1    CVRI01000075    CRL08602.1    KPI90909.1    KY643683    AQY62686.1    KP899546    AKQ06145.1    KF960794    AII21996.1    ODYU01001878    SOQ38698.1    ODYU01004253    SOQ43930.1    ODYU01002537    SOQ40155.1    GEYN01000003    JAV02126.1    KC952900    AGQ43599.1    KF960796    AII21998.1    KPI90901.1    KPJ06614.1    NEVH01007404    PNF35793.1    LC017754    BAR64768.1    GFDL01004496    JAV30549.1    GL447829    EFN85870.1    KQ435826    KOX72014.1    KY595778    ARS46832.1    KZ288369    PBC26783.1    JR045677    AEY60027.1    DS232324    EDS40039.1    RSAL01000295    RVE42846.1    EDS40053.1    ODYU01002835    SOQ40809.1    EDS40041.1    AGBW02008082    OWR54176.1    CH477377    EAT42288.1    KQ460556    KPJ13979.1    ODYU01004588    SOQ44620.1    EAT42289.1    AXCN02000553    ODYU01010390    SOQ55467.1    ACPB03021369    ACPB03021370    GALX01003009    JAB65457.1    LC017752    BAR64766.1    JXUM01061540    KQ562154    KXJ76552.1    KQ971466    EFA13012.2   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000053240    UP000037510    + More
UP000007151    UP000027135    UP000183832    UP000235965    UP000008237    UP000053105    UP000242457    UP000002320    UP000005203    UP000075882    UP000008820    UP000075880    UP000075886    UP000015103    UP000069940    UP000249989    UP000007266   

PRIDE

H9JFE7    H9JFH1    H9JFX1    A8TUB4    H9JFZ2   

Pfam

PF01315   Ald_Xan_dh_C        + More
PF03450   CO_deh_flav_C
PF02738   Ald_Xan_dh_C2
PF01799   Fer2_2
PF00941   FAD_binding_5
PF00111   Fer2
PF01130   CD36

Interpro

IPR002888   2Fe-2S-bd        + More
IPR016208   Ald_Oxase/xanthine_DH       
IPR000674   Ald_Oxase/Xan_DH_a/b       
IPR036318   FAD-bd_PCMH-like_sf       
IPR036884   2Fe-2S-bd_dom_sf       
IPR008274   AldOxase/xan_DH_Mopterin-bd       
IPR005107   CO_DH_flav_C       
IPR001041   2Fe-2S_ferredoxin-type       
IPR036010   2Fe-2S_ferredoxin-like_sf       
IPR036683   CO_DH_flav_C_dom_sf       
IPR006058   2Fe2S_fd_BS       
IPR016166   FAD-bd_PCMH       
IPR037165   AldOxase/xan_DH_Mopterin-bd_sf       
IPR002346   Mopterin_DH_FAD-bd       
IPR036856   Ald_Oxase/Xan_DH_a/b_sf       
IPR016169   FAD-bd_PCMH_sub2       
IPR012675   Beta-grasp_dom_sf       
IPR002159   CD36_fam       
IPR006621   Nose-resist-to-fluoxetine_N       

SUPFAM

SSF55447   SSF55447        + More
SSF56176   SSF56176       
SSF56003   SSF56003       
SSF47741   SSF47741       
SSF54665   SSF54665       
SSF54292   SSF54292       

Gene 3D

3.30.465.10     3.10.20.30    

CDD

cd00207  fer2

ProteinModelPortal

H9JFE7   A0A2A4JU78   A0A2H1VNQ0   A0A3S2PBH0   A0A2A4ITB4   A0A2W1BG03   + More
A0A2W1BJJ3   A0A2W1BIK1   A0A194PIT3   A0A0N1IAK3   A0A2A4JUF7   A0A194PE80   A0A0L7L4E9   A0A0L7L3S0   A0A2A4IRV9   A0A194PDB3   A0A2W1BIE3   A0A2H1V2I4   A0A0N0PD45   A0A0F7QHK5   A0A2H1V6B6   A0A1X9ZM11   A0A2H1VA65   A0A2A4ISI6   A0A194PCQ5   H9JFH1   A0A3S2NDD1   A0A2H1VEC0   A0A0F7QJW1   A0A1X9ZM28   A0A0N0PF58   H9JFX1   A0A194QCB6   A0A194QUG5   A0A212EZ25   A0A2H1W0Z2   A0A0N0PDI7   A0A0L7L4A2   A0A2A4ITG3   A0A3S2KXA4   A0A194QBY5   A0A0F7QJV6   A0A2A4JXM9   A0A2A4JYR8   A0A1X9ZM23   A0A194QM53   A8TUB4   A0A3S2NMY0   A0A2A4JB30   A0A3S2NTK8   A0A0L7LLP8   H9JFZ2   A0A2A4JX39   A0A2A4JY06   A0A0H4TY60   A0A212F2C6   A0A076FRA1   A0A067QY40   A0A1J1J970   A0A194PDZ5   A0A1U9X1S0   A0A0H4TD12   A0A076FX80   A0A2H1VCW8   A0A2H1VSX5   A0A2H1VH28   A0A1L8D6P5   S5FPI8   A0A076FRM9   A0A194PCA1   A0A194QMP0   A0A2J7R4N3   A0A0F7QIE0   A0A1Q3FSG4   E2BEN6   A0A0N0BES0   A0A1X9ZLZ6   A0A2A3E4V2   V9IH93   B0X3W2   A0A3S2P6B3   A0A087ZYD0   A0A182LLK4   B0X3X6   A0A2H1VIZ6   B0X3W4   A0A212FKB8   Q177D7   A0A182J4M1   A0A0N1I7K2   A0A2H1VUX4   Q177D6   A0A182QVB6   A0A2H1WR31   T1HPX4   V5GUW9   A0A0F7QEA1   A0A182GGE1   D7EK61  

PDB

3UNI     E-value=1.53277e-37,     Score=392

KEGG

101738607    K00106 xanthine dehydrogenase/oxidase [EC:1.17.1.4 1.17.3.2] | (RefSeq) xanthine dehydrogenase 1-lik

GO

GO:0005506   GO:0051537   GO:0009055   GO:0071949   GO:0046872   GO:0016491   GO:0050660   GO:0016021   GO:0102797   GO:0004031   GO:0102798   GO:0009115   GO:0004854   GO:0005829   GO:0003824   GO:0016614   GO:0051536   GO:0055114  

Length:

437

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03281

Exp number, first 60 AAs:

0.01724

Total prob of N-in:

0.00778

outside

1  -  437

 

 

Pi

322.065991

Theta

232.473421

Tajima's D

1.753145

CLR

0.046214

CSRT

0.83890805459727

Interpretation

Uncertain