Gene

KWMTBOMO10699

Pre Gene Modal

BGIBMGA008244

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_xanthine_dehydrogenase_1-like_[Bombyx_mori]

Location

Bomo_Chr18(-):758879-760329      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.244 Mitochondrial   Reliability : 1.102

CDS

ATGTCTGATACTCTTAAAAAAAACGCTGAGTATACCAAAAGGCGTGCCGCTGTCACGAAATTCAATGCTGAAAACAGATGGAAGAAACGTGGCCTTAGGTGCTCCTTCTCTAGGTGGACGCCAGCAGGAGGTCAGTACTTGGACACAAACATGGCAGTCTACCACGAAGATGGTACTGTTGCCATTTGCCACGGTGGCATAGAAATGGGCCAAGGGCTGAACACAAAAGCGGCCCAAATCTGTGCGTATTACTTAAAGATACCCTTAGAGAAAATTCAGGTTAAGGCCAACAGCACGGTTTTGACACCTAACGGCTTTATATCCGGTGGAAGTCAGACGTCACTGAATATAGGCGTAGCTGTTACGAGGTGTTGTGAGGAACTGTTACGAAGATTGCAGCCAATAAGATTGCAGATGAACAACCCGACTTGGGAGGAATTAGTGAAGAAAGCTTTTGATTCTAATGTCGATTTGCAAGTTCATGGTTTCGTTAGCGCTATCGATGCACAGATCTATAATATTTTCGGAGTTTCCTTGGCAGAAGTTGAGGTGGACGTTTTAACTGGAGAGTCGGAGATATTAAGAGTCGATATCCTACAAGACGTCGGGAAAAGCGTCAGCCCTGAAATCGATATCGGACAAGTTGAAGGGGCATTCATCATGGGTCTTGGGTACTGGACATGTGAGAAGTTGGTATATGAACCTAATACTGGGGAATTACTCACTGACCGCACTTGGAACTATAGCGTGCCCTTAGCAAGAGATATCCCGCAAGATCTCAGAGTATACTTCAGGAAGAACTCTTACAGTACTGAACTTTTTCTTGGAGCCAAAGGTACGCTTGTATTGCTATTGTCAAGAATGAATGAATGA

Protein

MSDTLKKNAEYTKRRAAVTKFNAENRWKKRGLRCSFSRWTPAGGQYLDTNMAVYHEDGTVAICHGGIEMGQGLNTKAAQICAYYLKIPLEKIQVKANSTVLTPNGFISGGSQTSLNIGVAVTRCCEELLRRLQPIRLQMNNPTWEELVKKAFDSNVDLQVHGFVSAIDAQIYNIFGVSLAEVEVDVLTGESEILRVDILQDVGKSVSPEIDIGQVEGAFIMGLGYWTCEKLVYEPNTGELLTDRTWNYSVPLARDIPQDLRVYFRKNSYSTELFLGAKGTLVLLLSRMNE

Cofactor

FAD
Mo-molybdopterin
[2Fe-2S] cluster

Uniprot

H9JFE7   A0A2W1BG03   A0A194PIT3   A0A2H1VNQ0   A0A2W1BIK1   A0A0N0PD45   + More
A0A2A4JU78   A0A2A4JUF7   A0A0F7QJW1   A0A3S2PBH0   A0A2W1BHI1   A0A194PDB3   A0A1X9ZM11   A0A0F7QEC7   A0A0L7L438   A0A0N1IAK3   A0A2W1BH31   A0A2H1VEC0   A0A2H1V6B6   A0A194PE80   A0A2A4ITB4   A0A2W1BJJ3   A0A0L7L3S0   A0A2H1VA65   A0A194PCQ5   A0A0N0PDI7   A0A3S2NDD1   A0A2A4ISI6   A0A212FI14   A0A2W1BIE3   A0A2H1V2I4   A0A3S2NTK8   A0A0L7L4E9   A0A2A4IRV9   H9JFH1   A0A1X9ZM28   A0A212EZ25   A0A1B6E8K7   A0A0F7QEA3   A0A194QCB6   A0A2H1V098   A0A2H1VUX4   A0A0N0PF58   A0A0F7QHK5   H9JFX1   A0A2A4ITG3   A0A2J7PXR7   A0A0L7L4A2   A0A2H1VH28   A0A2H1V0B2   A0A2H1VCW8   A0A076FX80   A0A2H1VSX5   A0A2A4JXM9   A0A2A4JB30   H9JFZ3   A0A1B6C5G4   H9JFZ2   A0A1B6I7V1   A0A1B6CXI3   A0A2A4JYR8   A8TUC0   A0A2H1V7P8   A0A076FRA1   H9JFX4   A0A067R2R7   A0A2A4JX39   A0A194QBY5   A0A194PIN2   A0A2C9GUL3   A0A2M4CMZ5   A0A0F7QEA1   A0A1Y9H2G2   A0A1Y9J0A2   W5JEG5   A0A182QVB6   A0A182R8R0   A0A212F791   A0A194QUG5   A0A2A4JY06   A0A182U9S4   A0A1L8DXJ0   A0A0V0G7W2   A0A1B6FB46   A0A1B6JH49   A0A240PL19   A0A182LLK4   A0A194PDZ5   A0A1L8DXS0   A0A3S2NMY0   A0A151X3M2   A0A182JVC0   A0A1L8DXU8   A0A0A9Y5G8   A0A195E3I3   A0A1B6JA43   A0A2M4BAX5   A0A2M4BAZ2   A0A182YKY2   A0A1Y9HAI9  

Pubmed

19121390    28756777    26354079    25803580    26227816    22118469    + More
24817326    17904312    24845553    20920257    23761445    20966253    25401762    25244985   

EMBL

BABH01034979    BABH01034980    BABH01034981    KZ150165    PZC72655.1    KQ459606    + More
KPI91000.1    ODYU01003306    SOQ41884.1    PZC72656.1    KQ460326    KPJ15694.1    NWSH01000648    PCG75033.1    PCG75032.1    LC017758    BAR64772.1    RSAL01000123    RVE46648.1    PZC72657.1    KPI90998.1    KY595781    ARS46835.1    LC017756    BAR64770.1    JTDY01003130    KOB70096.1    KPJ15693.1    KZ150135    PZC72994.1    ODYU01002094    SOQ39169.1    ODYU01000882    SOQ36316.1    KPI90999.1    NWSH01007964    PCG62736.1    PZC72996.1    JTDY01003126    KOB70107.1    ODYU01001481    SOQ37735.1    KPI90997.1    KPJ15692.1    RSAL01000088    RVE48202.1    PCG62735.1    AGBW02008446    OWR53382.1    PZC72997.1    ODYU01000376    SOQ35055.1    RVE48204.1    JTDY01003022    KOB70290.1    PCG62737.1    BABH01034958    BABH01034959    BABH01034960    BABH01034961    BABH01034962    BABH01034963    BABH01034964    BABH01034965    KY595780    ARS46834.1    AGBW02011403    OWR46707.1    GEDC01003026    JAS34272.1    LC017757    BAR64771.1    KQ459193    KPJ03064.1    ODYU01000094    SOQ34283.1    ODYU01004588    SOQ44620.1    KQ459674    KPJ20482.1    LC017755    BAR64769.1    BABH01001558    NWSH01007172    PCG63055.1    NEVH01020852    PNF21138.1    JTDY01003017    KOB70302.1    ODYU01002537    SOQ40155.1    ODYU01000095    SOQ34285.1    ODYU01001878    SOQ38698.1    KF960794    AII21996.1    ODYU01004253    SOQ43930.1    NWSH01000413    PCG76559.1    NWSH01002143    PCG69059.1    BABH01001661    GEDC01028540    JAS08758.1    BABH01001657    BABH01001658    BABH01001659    BABH01001660    GECU01024721    JAS82985.1    GEDC01019096    JAS18202.1    PCG76560.1    EU073424    ABW71272.1    ODYU01001109    SOQ36868.1    KF960795    AII21997.1    BABH01001568    BABH01001569    BABH01001570    BABH01001571    BABH01001572    BABH01001573    KK852750    KDR17215.1    PCG76561.1    KPJ03063.1    KPI90950.1    AXCM01000856    GGFL01002475    MBW66653.1    LC017752    BAR64766.1    ADMH02001746    ETN61219.1    AXCN02000553    AGBW02009901    OWR49607.1    KQ461154    KPJ08620.1    PCG76558.1    GFDF01002904    JAV11180.1    GECL01002669    JAP03455.1    GECZ01022332    JAS47437.1    GECU01009219    JAS98487.1    KPI90909.1    GFDF01002843    JAV11241.1    RSAL01000229    RVE43893.1    KQ982557    KYQ55015.1    GFDF01002797    JAV11287.1    GBHO01015297    JAG28307.1    KQ979701    KYN19698.1    GECU01011660    JAS96046.1    GGFJ01001064    MBW50205.1    GGFJ01001065    MBW50206.1    AXCN02000554   

Proteomes

UP000005204    UP000053268    UP000053240    UP000218220    UP000283053    UP000037510    + More
UP000007151    UP000235965    UP000027135    UP000075883    UP000075884    UP000076407    UP000000673    UP000075886    UP000075900    UP000075902    UP000075885    UP000075882    UP000075809    UP000075881    UP000078492    UP000076408   

PRIDE

H9JFE7    H9JFH1    H9JFX1    H9JFZ3    H9JFZ2    A8TUC0    + More
H9JFX4   

Pfam

PF01315   Ald_Xan_dh_C        + More
PF03450   CO_deh_flav_C
PF02738   Ald_Xan_dh_C2
PF01799   Fer2_2
PF00941   FAD_binding_5
PF00111   Fer2
PF01130   CD36

Interpro

IPR002888   2Fe-2S-bd        + More
IPR016208   Ald_Oxase/xanthine_DH       
IPR000674   Ald_Oxase/Xan_DH_a/b       
IPR036318   FAD-bd_PCMH-like_sf       
IPR036884   2Fe-2S-bd_dom_sf       
IPR008274   AldOxase/xan_DH_Mopterin-bd       
IPR005107   CO_DH_flav_C       
IPR001041   2Fe-2S_ferredoxin-type       
IPR036010   2Fe-2S_ferredoxin-like_sf       
IPR036683   CO_DH_flav_C_dom_sf       
IPR006058   2Fe2S_fd_BS       
IPR016166   FAD-bd_PCMH       
IPR037165   AldOxase/xan_DH_Mopterin-bd_sf       
IPR002346   Mopterin_DH_FAD-bd       
IPR036856   Ald_Oxase/Xan_DH_a/b_sf       
IPR016169   FAD-bd_PCMH_sub2       
IPR012675   Beta-grasp_dom_sf       
IPR002159   CD36_fam       

SUPFAM

SSF55447   SSF55447        + More
SSF56176   SSF56176       
SSF56003   SSF56003       
SSF47741   SSF47741       
SSF54665   SSF54665       
SSF54292   SSF54292       

Gene 3D

3.30.465.10     3.10.20.30    

CDD

cd00207  fer2

ProteinModelPortal

H9JFE7   A0A2W1BG03   A0A194PIT3   A0A2H1VNQ0   A0A2W1BIK1   A0A0N0PD45   + More
A0A2A4JU78   A0A2A4JUF7   A0A0F7QJW1   A0A3S2PBH0   A0A2W1BHI1   A0A194PDB3   A0A1X9ZM11   A0A0F7QEC7   A0A0L7L438   A0A0N1IAK3   A0A2W1BH31   A0A2H1VEC0   A0A2H1V6B6   A0A194PE80   A0A2A4ITB4   A0A2W1BJJ3   A0A0L7L3S0   A0A2H1VA65   A0A194PCQ5   A0A0N0PDI7   A0A3S2NDD1   A0A2A4ISI6   A0A212FI14   A0A2W1BIE3   A0A2H1V2I4   A0A3S2NTK8   A0A0L7L4E9   A0A2A4IRV9   H9JFH1   A0A1X9ZM28   A0A212EZ25   A0A1B6E8K7   A0A0F7QEA3   A0A194QCB6   A0A2H1V098   A0A2H1VUX4   A0A0N0PF58   A0A0F7QHK5   H9JFX1   A0A2A4ITG3   A0A2J7PXR7   A0A0L7L4A2   A0A2H1VH28   A0A2H1V0B2   A0A2H1VCW8   A0A076FX80   A0A2H1VSX5   A0A2A4JXM9   A0A2A4JB30   H9JFZ3   A0A1B6C5G4   H9JFZ2   A0A1B6I7V1   A0A1B6CXI3   A0A2A4JYR8   A8TUC0   A0A2H1V7P8   A0A076FRA1   H9JFX4   A0A067R2R7   A0A2A4JX39   A0A194QBY5   A0A194PIN2   A0A2C9GUL3   A0A2M4CMZ5   A0A0F7QEA1   A0A1Y9H2G2   A0A1Y9J0A2   W5JEG5   A0A182QVB6   A0A182R8R0   A0A212F791   A0A194QUG5   A0A2A4JY06   A0A182U9S4   A0A1L8DXJ0   A0A0V0G7W2   A0A1B6FB46   A0A1B6JH49   A0A240PL19   A0A182LLK4   A0A194PDZ5   A0A1L8DXS0   A0A3S2NMY0   A0A151X3M2   A0A182JVC0   A0A1L8DXU8   A0A0A9Y5G8   A0A195E3I3   A0A1B6JA43   A0A2M4BAX5   A0A2M4BAZ2   A0A182YKY2   A0A1Y9HAI9  

PDB

6Q6Q     E-value=4.8363e-50,     Score=498

KEGG

101738607    K00106 xanthine dehydrogenase/oxidase [EC:1.17.1.4 1.17.3.2] | (RefSeq) xanthine dehydrogenase 1-lik

GO

GO:0005506   GO:0051537   GO:0009055   GO:0071949   GO:0016491   GO:0046872   GO:0050660   GO:0016021   GO:0003824   GO:0016614   GO:0051536   GO:0055114  

Length:

290

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.231

Exp number, first 60 AAs:

0.00057

Total prob of N-in:

0.08474

outside

1  -  290

 

 

Pi

267.382898

Theta

208.71386

Tajima's D

0.878987

CLR

0.021667

CSRT

0.632818359082046

Interpretation

Uncertain