Gene

KWMTBOMO10698

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]

Location

Bomo_Chr18(+):755750-757569      View in EpiBrowser

Full name

RNA-directed DNA polymerase from mobile element jockey      

Alternative Name

Reverse transcriptase

Location in the cell

Mitochondrial   Reliability : 2.434

CDS

ATGGAGTCGCGGGTACAAAAAAATGCCACCCATGGGGACCCGTCGGTGCGCCCAGTCACGGCCGGAGTTCCCCAGGGAAGCGTCCTGGCACCAGTCCTCTACGCTCTCTACACCAACGACATTCCCACGCTTGAGGGCAACCTCCAAGCGTGGGAAGCCGACGTGAAGTTGGCGCTGTTTGCCGACGACAGCGCCTACTTCTCGTCCTCTAATTTCCCCTCTGCGGCCATTTCGAGGATGCAGAGGCTGTTGGACCTACTGCCCCAGTGGCTGGACCGATGGAGGGTCGCGGTCAACGTGGGGAAGACCGCGGCTATCCTCTTCGGTCCGGTCCGCACAAGAGTCGTCCCAGGACAGCTCAGTCTCCGTGGAGTCAATGTCGAGTTTAGGCCCAGTGTCCGATACCTGGGAGTCAATATCGACCGGAGTTTGAGGATGACCGCCCACGCCAAGTCGGCGTTGGCGGCCGCCCGCTATGCGAGGTTTCTCCTCCGGCCGGTGTTGGCCTCCAGGTTGCCGACCAGGACTAGACTCGGCATTTACAAGACGTATGTTCGTTCCCGTATCACGTACGCAGCTGCGGCCTGGTATCACCTCATCCCGCAGATCATGCGGGTGAAGTTACAGGCCCAGCAGAATCTGGCTCTTCGCACGATAGTCGGAGCAGGGCGTTACGTCAGAAATGACGTAATCGCCCGGGATCTAGATGTGGAGTCGCTCGAGGAGTTCATTCGGAGGCTAGCTCGTAATATGTACGAGCGGGCTGACGGTGGACCCCACGAGCATCTCCACAATATAGCTCCCTTGCACGCCAGACCACCTGATGGTAGGGCGCTACCAAGGGAGCTACTGGAACCCCCGGCTATGGGAGCTTCGTCCCGGGCAGTGGGGATTGCCCCGAGGCCCGTTCCGTGCCCCCGAAAGGGGGTACGACGACCCTTCTTCTTCTTCTCATGGGGACCACATGGCAAAAACAATTAA

Protein

MESRVQKNATHGDPSVRPVTAGVPQGSVLAPVLYALYTNDIPTLEGNLQAWEADVKLALFADDSAYFSSSNFPSAAISRMQRLLDLLPQWLDRWRVAVNVGKTAAILFGPVRTRVVPGQLSLRGVNVEFRPSVRYLGVNIDRSLRMTAHAKSALAAARYARFLLRPVLASRLPTRTRLGIYKTYVRSRITYAAAAWYHLIPQIMRVKLQAQQNLALRTIVGAGRYVRNDVIARDLDVESLEEFIRRLARNMYERADGGPHEHLHNIAPLHARPPDGRALPRELLEPPAMGASSRAVGIAPRPVPCPRKGVRRPFFFFSWGPHGKNN

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Miscellaneous

Prefers poly(rC) and poly(rA) as template and activated DNA is not effective.

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  RNA-directed DNA polymerase from mobile element jockey

Uniprot

A0A3S2NJ07   J9LF86   X1XFE3   X1WWQ0   J9LFC9   X1X2B8   + More
J9KPF1   A0A2S2QZC0   A0A087T1W0   X1X928   A0A2S2Q823   A0A2S2RAN7   X1WSV5   J9KCZ4   X1WNI2   X1WZH0   J9L876   X1XGU0   X1WN18   X1X0N4   A0A2S2NJB5   X1WLB2   V5GNF3   J9KVX5   A0A194Q1H8   A0A0N0PA09   X1WKB2   J9LR29   J9LC21   A0A0N1PFV1   A0A0A9Z4E6   X1WVE4   A0A1Y1KUU7   A0A2S2PR14   A0A0A9YN51   X1WVA7   J9KPF2   A0A0A9YJ00   J9KKL3   X1WMU5   A0A0A9YU04   X1WWC4   A0A2S2N7M6   X1WXU3   U4UTK6   V5I850   A0A224XF24   A0A1Y1LKN6   A0A224X6Q4   A0A142LX53   N6UKN2   A0A2J7RRU8   V5GNJ2   A0A2S2QTZ8   A0A2J7QEZ4   A0A2J7Q5G9   A0A139WA11   A0A1Y1NA23   A0A1B6LG18   A0A087TV70   J9LLC8   Q9XXW0   A0A2S2PX53   A0A2L2YNL2   J9KPF0   A0A2J7PMP9   P21328   Q8T456   A0A2J7R2B7   A0A2J7RS77   A0A2J7RB54   A0A2J7PMP6   A0A2J7RM10   A0A2J7Q4F7   A0A2J7R4B7   A0A2J7RIW7   A0A2J7Q059   O96544   A0A1B6DFT6   Q9BPQ0   A0A2J7QUJ9   A0A2J7Q6J2   X1X2J8   A0A139W8G9   A0A2J7QFL0   A0A2J7QQP1   A0A2J7Q1Y9   A0A2J7RJB2  

EC Number

2.7.7.49

Pubmed

26354079    25401762    28004739    23537049    25527032    18362917    + More
19820115    10333566    26561354    2463954    3040362    1714378    10380107   

EMBL

RSAL01000708    RVE41206.1    ABLF02017815    ABLF02029291    ABLF02021994    ABLF02023911    + More
ABLF02041765    ABLF02041767    GGMS01013269    MBY82472.1    KK113014    KFM59099.1    ABLF02066620    GGMS01004685    MBY73888.1    GGMS01017914    MBY87117.1    ABLF02016494    ABLF02066976    ABLF02008463    ABLF02008153    ABLF02008462    ABLF02008464    ABLF02034467    ABLF02033522    ABLF02055645    ABLF02021177    ABLF02027367    ABLF02066338    ABLF02060395    GGMR01004661    MBY17280.1    ABLF02042518    ABLF02057746    GALX01005359    JAB63107.1    ABLF02010251    ABLF02035981    KQ459580    KPI99178.1    KQ459259    KPJ02068.1    ABLF02049496    ABLF02025082    ABLF02039175    ABLF02041809    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    KQ459265    KPJ02064.1    GBHO01041571    GBHO01005400    GBHO01005396    JAG02033.1    JAG38204.1    JAG38208.1    ABLF02004189    ABLF02005775    ABLF02015592    ABLF02057149    ABLF02058897    GEZM01074951    JAV64378.1    GGMR01019198    MBY31817.1    GBHO01041572    GBHO01041570    GBHO01010553    JAG02032.1    JAG02034.1    JAG33051.1    ABLF02034494    ABLF02003739    ABLF02003740    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02014862    ABLF02014866    ABLF02061908    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    ABLF02003961    ABLF02059872    GGMR01000167    MBY12786.1    ABLF02008933    KB632361    ERL93526.1    GALX01005300    JAB63166.1    GFTR01008038    JAW08388.1    GEZM01053022    JAV74219.1    GFTR01008279    JAW08147.1    KU543687    AMS38379.1    APGK01020047    KB740155    ENN81216.1    NEVH01000598    PNF43535.1    GALX01005299    JAB63167.1    GGMS01012005    MBY81208.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    NEVH01017559    PNF23833.1    KQ971729    KYB24751.1    GEZM01008457    JAV94772.1    GEBQ01017345    JAT22632.1    KK116883    KFM69009.1    ABLF02029215    AB018558    BAA76304.1    GGMS01000737    MBY69940.1    IAAA01035747    LAA09607.1    ABLF02038199    ABLF02038200    ABLF02038201    ABLF02038202    ABLF02038205    NEVH01023961    PNF17613.1    M22874    M38643    AY089343    AAL90081.2    NEVH01007841    PNF34974.1    NEVH01000280    PNF43672.1    NEVH01005938    PNF38077.1    NEVH01023962    PNF17612.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01018383    PNF23463.1    NEVH01007443    PNF35684.1    NEVH01003017    PNF40781.1    NEVH01020071    PNF21969.1    AF081101    AAC72919.1    GEDC01012749    JAS24549.1    AB055391    BAB21761.1    NEVH01010546    PNF32261.1    NEVH01017470    PNF24199.1    ABLF02061876    KQ973342    KXZ75569.1    NEVH01014858    PNF27387.1    NEVH01012084    PNF30905.1    NEVH01019376    PNF22596.1    NEVH01002994    PNF40916.1   

Proteomes

UP000283053    UP000007819    UP000054359    UP000053268    UP000030742    UP000019118    + More
UP000235965    UP000007266   

PRIDE

Q9XXW0    P21328    Q8T456    Q9BPQ0   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF10551   MULE
PF13843   DDE_Tnp_1_7

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR006579   Pre_C2HC_dom       
IPR036875   Znf_CCHC_sf       
IPR018289   MULE_transposase_dom       
IPR029526   PGBD       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A3S2NJ07   J9LF86   X1XFE3   X1WWQ0   J9LFC9   X1X2B8   + More
J9KPF1   A0A2S2QZC0   A0A087T1W0   X1X928   A0A2S2Q823   A0A2S2RAN7   X1WSV5   J9KCZ4   X1WNI2   X1WZH0   J9L876   X1XGU0   X1WN18   X1X0N4   A0A2S2NJB5   X1WLB2   V5GNF3   J9KVX5   A0A194Q1H8   A0A0N0PA09   X1WKB2   J9LR29   J9LC21   A0A0N1PFV1   A0A0A9Z4E6   X1WVE4   A0A1Y1KUU7   A0A2S2PR14   A0A0A9YN51   X1WVA7   J9KPF2   A0A0A9YJ00   J9KKL3   X1WMU5   A0A0A9YU04   X1WWC4   A0A2S2N7M6   X1WXU3   U4UTK6   V5I850   A0A224XF24   A0A1Y1LKN6   A0A224X6Q4   A0A142LX53   N6UKN2   A0A2J7RRU8   V5GNJ2   A0A2S2QTZ8   A0A2J7QEZ4   A0A2J7Q5G9   A0A139WA11   A0A1Y1NA23   A0A1B6LG18   A0A087TV70   J9LLC8   Q9XXW0   A0A2S2PX53   A0A2L2YNL2   J9KPF0   A0A2J7PMP9   P21328   Q8T456   A0A2J7R2B7   A0A2J7RS77   A0A2J7RB54   A0A2J7PMP6   A0A2J7RM10   A0A2J7Q4F7   A0A2J7R4B7   A0A2J7RIW7   A0A2J7Q059   O96544   A0A1B6DFT6   Q9BPQ0   A0A2J7QUJ9   A0A2J7Q6J2   X1X2J8   A0A139W8G9   A0A2J7QFL0   A0A2J7QQP1   A0A2J7Q1Y9   A0A2J7RJB2  

KEGG

105842439    no KO assigned | (RefSeq) uncharacterized LOC105842439

GO

GO:0003964   GO:0008270   GO:0003676   GO:0004519  

Length:

326

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.18152

Exp number, first 60 AAs:

0.18922

Total prob of N-in:

0.15190

outside

1  -  326

 

 

Pi

589.048132

Theta

234.194891

Tajima's D

4.664313

CLR

0.306824

CSRT

0.99990000499975

Interpretation

Uncertain