Silkworm Genome Informatics Database

Gene

KWMTBOMO10687

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr18(+):483860-489664 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.159 Nuclear Reliability : 1.278

CDS

ATGATGGCAGACTTAACGAAAAAATTACCCCAGGAGGGTACCACTCTAGGTGGAGAATCCCTCCGTGCTTCCACCTCGGTGGGAGCATGCTGCCCCACGTATTCTGGGGGGGGCAAAGCATGCCACGATGAAGGGGGCTGTGCGACGGGCAGCGGAAAACCCGTCGAACTGAGGGAGACCCGCTCGGGGAAGGGCGCACCGTCACCGGCGCCGTCATCGGCGTCGATGTCTGTCGCCTCGCTGGACGGGCGGACGACAGAAGAGGAGGAGGGCGGTCTTCGGGACCCTGCCTTGGTCATAGGCAGGGCCATGAAGACCGTCAAGTCGTATGCGGCGACCAGTGCCAAAACCAAAGCTGCTGGCCGCAGGCTGCGGGAAGTCGTCTCGCGAGTCTCGAAGGTTCTGCCTTCGGTTGCTTCCGCCAATGACCAGGTGGTGCAGCTGATGGCGGAGAATTTGAGGCTCCGAGCACAGCTACAGGCGCAGCGGCGGCCCGATGACAAGGTTGCTGCTACCAAGCGGGTAGCCGCGACGAGGTCGTCACCCGCGTTGCCGCGTGCCGCTGGGTCGCGGACTCCTCCGGCATCTGTGTCGCCGCTGGTCTCCGGGGTCCCTCGGGGTCCCTGTCCCTCAGCGGCGGCTGGCGACCCGTGGCCCGTGCTGCCACCATCGCGCGCGGTACAGCGGCGTTCGCGTCTCCCGTCGCCGCGGTCTAGGGAGGCGACGGCCGTCGAGCGGCAGCAGGGATCCGCGGGGCCACGGATCGTGGGCCTGCCGGAACCGAATTGCTACAGCCTGGACGAGATTATCGATCGCACCGTCCAGGCTGTAATGGAAAGGCTGGGTGGCGGGCTGGCGGCACTCGAAGCGAAACGTATTGTCGCTAGTGACGCTGAACGGCCTGCGTCTACACATGCCGCGGTGTCGGGTGCTGCAGTGACCCGCTCCACCCCCGTACAGGCTCCAGCCACTAGGGCGGGCCCGGGGCGAGACAGAGCCAAGCGGGGGGGCGGCGCTAACGCGAAGTGCACATCGCAAGCGCCTCAACCCCGTCCGCTGCCCCCGCCCCCGTCTAACATGGACGAGGGGTGGAATGTGGTGGCCCGGCGGGGTGCCAAGAGGGCCGTACCGACAGCTCCCCAAGTGGGTGGAGCACCGGCCACTGCGGCGTCTCAGGCTGCTCCCCAACAGGGTCGAGCGCCTGTGGCCGCCAAGAAAAAGAAGATGAAGAAGAAGTCGTCGCGCGCGCCGCGGTCGGCGGCAGTGGTCTTAACGCTGCTGCCGGCCGCCGAGGCCAAGGGCGTGTCATACGGAGATGTAGTCTCCCGGGCGCGCGCGGCTATTGATCTGGACGAGATCGGGGCGGGGGAGGGCCTCCGCTGTAGGCTGACGGCCAATGGGGCCAAGCTGCTAGAGTGTCCCGGTGCCGATAGTTCCGGCATCGCGGAGCGTCTGGCGGCGAAGCTCCGTACGGTTCTGCCTGAGGAAGAGGTTCGAGTGCACAGGCCGGTCAAAATGGCTGAATTGAGAGTGACCGGCCTGGACGACTGCACCACTAAGGATGAGGTGGCGGCGGCTATTGCCGCCCGGGGCAACTGCGCCCTGGAGAATATAACTGTAGGCGAGCTGCGCCTCGGTTATACCGGGGCTGGCTCTGTTTGGGTGCGTTGCCCGGTAGAGGCGGCCACCTCCTTGGCTGCTCCTCCGCCCGGTAGACCGTCGGGGGAACCGGGCAGGTTGCGCGTGGGCTGGATAGCGGCCCGCGTGCGCCTTCTCGAACCACGCGCCTGGCGGTGCCTCAGATGCTTCAGCACTGGGCACTGCCTCGCAAAATGCGCGAGTGCGGTTGACCGCAGCGGATTGTGCTTTCGCTGTGGTCAGCCGGGACACAAGGCGGCCGTGTGCTCGGCTGCGCCGCATTGCTTATTATGTGCGGCGGCCGGGCGCAAGGCTGACCACCAGGCCGGGGGCAAGGCCTGCCCTCCGGCCAGCAAGAATGCTGAACGAAATCGGCGCCGCCAAGCTAAGCGGCGTCAAAAGAAGCGGTTGGCCGGGGAGCACCAGCCGGCACTTTCCTTAATGGATCACACCTATCGCTTCCTGCAGGGAAACTTGAACCACTCCGCTGGGGCTCAGGACATGTTGCTCCAGACCATGGCGGAGTGGTCAATTGACGTGGCTGTGGTCGCCGAGCCATACTTCGTTCCCCCAGCGGATGACTGTTGGTTTGGGGACGTTGATGGCTTGGCGGCCATACATATCAGAAGAACTGCGATGGTCCCCCCCCTGGCGATGGTGACCAGGGGCCCCGGGATCGTCGCGGTACAGTTAGAAAATATCGTCGTGATCGGGGTGTACTTTTCTCCGAATCGGCCTACCGTCGAGTTTGAGCGGTTCCTGGACGGGCTAGAGGTGATCGCTCGTCACCTCGCTCCCCGTTCAGTGATACTGGCGGGGGACTTCAATGCGAAGTCTGTCGCTTGGGGTTCCCCATTCACGGACGCTCGTGGTAGGCTGCTGGAGGAGTGGGCGGTCGCGGTCGGTCTCTGTATCGTTAATAGGGGCTCGATCGCGACTTGCGTGCGGTGGACGGGCGAGTCTATCGTGGACTTGACGTTCGCGAGCTCGCCCGTCGCACGGCGCATCCTCGGCTGGAGAGTGGTGGTGGGGGCGGAATCGTTGTCCGATCACCGGTATATCCGGTACGATCTTTCTGCCCCTGCGCCGACGCCGGCTGCAGGTGCCCGCGGGGTTGACCCCCCGCAGAGTGCATCCCGGTCATTCCCTAGGTGGGCACTGAAGCTCCTGAACAGGGAGCTCCTGGTGGAGGCCTCTATGGTGGCGGCGTGGGCGCCCAAGCGCCCACAACCTGTCGATGTGGAAACCGAGGTCGAATGGTTCCGGGGCGCGATGCACCGCATATGTGATGCCTCGATGCCCCGGGTCGGCTCTCGGCACTCTGGACGGCGACAGTCGCCCTGGTGGTCGCCCGAAATTGCAAGACTGCGTGCGGTCTCCATTCGGGCGAGCCGCCGGTGCACTAGACACCGCCGTCGCCGCCGCCTGCGGCGCGACGAGCCCGTCGCGTTCGCGGAGGAGGAAGCTCGGCTGCACCGCGAATATCGCGCTGCGAAGGACGCCCTGCGGCTGGCCATCAGGCGGGCCAAGGAGCAGAACATGGAGAGACTCTTGGAGGCGCTCGAAGCGGATCCGTGGGGGAGCCCATACAAATTGGTACGCGGCAAGTTGCGCCCGTGGGCCCCCTCTATGACTGAGCGTCTCCAGCCCCAGCAGCTGCGGGACATCGTTTCGGCGTTGATCCCGCAGGAGCGGGAGGGTTTTGTCCCTCCCGCTATGGGCGGGCCGTCTGAAATCGTCGACGGCCAAGCTCCTGCTGAGGTGCCCCGTATTACGGAGGCAGAGCTCCGGGTGGCCGTTGTCAAGATGACTGCGAGAGACACGGCCCCCGGCCCGGACGGAGTCCACGGCCGGGTATTGGCCTTGGCCCTCGGTGCCCTGGGGGACCGGCTCCTTGAGCTATATAATGGCTGCTTGGAGTCGGGACGGTTTCCGTCGCTCTGGCGGACGGGTAGACTTGTGTTGTTGAGGAAGGAGGGGCGCCCGGTGGATACAGCCGCCGGATATCGTCCTATCGTGCTGCTGGACGAGGCGGGAAAATTGCTGGAACGTATTCTGGCTGCCCGCATCGTTCGGCACCTGGTCGGGGTGGGGCCTGACCTGTCGGCGGAGCAGTACGGCTTCCGGGAGGGCCGTTCGACCGTGGATGCAATTCTTCGCGTGCGGTCCCTCTCGGACAAGGCCGTCTCTCGGGGTGGGGTGGCGCTGGCGGTGTCTCTTGACATCGCCAACGCATTTAACACTCTGCCCTGGACCGTGATAGGGGGGGCACTGGAGAGGCATGGAGTGCCCCTCTACCTCCGCCGGCTGGTTGGGTCCTATTTGGGGGCCAGGTCGGTCGTATGTACCGGGTACGGTGGGACCCTTCATCGCTTTCCGGTCGTGCGTGGTGTTCCGCAGGGGTCGGTTCTCGGCCCCCTCTTGTGGAATATCGGGTACGACTGGGTGCTGAGGGGCGCCCTCCTCCCGGGCCTCCGCGTTATTTGTTACGCGGACGACACGTTGGTCGTGGCCCGGGGGGATGATTTTAGGGAGTCTGCCCGTCTCGCCACAGCGGGAGTGGCCCTCGTCGTCGGAAGGATAAGGAGGCTGGGTCTCGACGTGGCGCTCAATAAATCCGAGGCTCTGTGGTTTCACGGGCCGCGGAGGGCGCCAGCCGTTGACACCCACATCGTGGTTGGAGGCGTCCGGATAGGGGTCGGGGTGCAGTTGAAGTACCTCGGCCTCGTGTTGGACAGCCGGTGGGCCTTTCGTGCTCACTTTGCGGAGCTGGTCCCCCGATTGATGGGGACGGCCGGTTCTTTGAGCCGGCTGCTCCCGAATATTGGGGGAAAGGATCAGGTTGTGCGCCGTCTCTACGCGGGGGTGGTGCGATCGATGGCCCTGTACGGTGCACCTGTGTGGGCTGAGCCGCGCAACCGGGCCACTATGGCTCGGTTCCTGCGCCGGCCGCAGCGCACCGTTGCCATCAGGGTCATCCGCGGATATCGCACCGTCTCCTTCGAGGCGGCGTGTGTTTTGGCGGGGACGCCGCCATGGGAGCTGGAGGCGGAGTCGCTCGCTGCCGACTATCGGTGGCGCAGCGAGCTTCGTGCTCGGGGCGTGGCGCGTGTCCCCGAGAGTGAGCTGCGGGCGCGGAAGGCCCATTCTCGGCGGTCCGTGCTCGAGTCGTGGTCGAGGCGATTGGCCAACCCCACGTGGGGGCTACGGACCGTCGAGGCGGTTTACCCGGTCTTTGATGACTGGGTGAATCGTGGCGAGGGACGTCTCACCTTTCGTCTGGTGCAGGTGCTGACCGGGCACGGATGCTTCGGGAAGTACCTGCGCCGGATAGGGGCTGAGCCGACGACGAGGTGTCACCATTGTGGACACGACCTGGACACGGCGGAGCATACGCTCGCTGTCTGCCCCGCTTGGGAGGTGCAGCGCCGTGTCCTGGTCGCAAAGATAGGACCTGACTTGTCGCTGCCTGGCGTCGTGGCGTCGATGCTTGGCAGCGATGAGTCATGGAAGGCTATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGAGTGAGGGAAAGCTCTCCTCACTACGCAGAAACCCGCCGCCGCCGAGCAGGGGGTCGGGACCGGGGTCGTATCCGTGACCTGGCCCCCTAA

Protein

MMADLTKKLPQEGTTLGGESLRASTSVGACCPTYSGGGKACHDEGGCATGSGKPVELRETRSGKGAPSPAPSSASMSVASLDGRTTEEEEGGLRDPALVIGRAMKTVKSYAATSAKTKAAGRRLREVVSRVSKVLPSVASANDQVVQLMAENLRLRAQLQAQRRPDDKVAATKRVAATRSSPALPRAAGSRTPPASVSPLVSGVPRGPCPSAAAGDPWPVLPPSRAVQRRSRLPSPRSREATAVERQQGSAGPRIVGLPEPNCYSLDEIIDRTVQAVMERLGGGLAALEAKRIVASDAERPASTHAAVSGAAVTRSTPVQAPATRAGPGRDRAKRGGGANAKCTSQAPQPRPLPPPPSNMDEGWNVVARRGAKRAVPTAPQVGGAPATAASQAAPQQGRAPVAAKKKKMKKKSSRAPRSAAVVLTLLPAAEAKGVSYGDVVSRARAAIDLDEIGAGEGLRCRLTANGAKLLECPGADSSGIAERLAAKLRTVLPEEEVRVHRPVKMAELRVTGLDDCTTKDEVAAAIAARGNCALENITVGELRLGYTGAGSVWVRCPVEAATSLAAPPPGRPSGEPGRLRVGWIAARVRLLEPRAWRCLRCFSTGHCLAKCASAVDRSGLCFRCGQPGHKAAVCSAAPHCLLCAAAGRKADHQAGGKACPPASKNAERNRRRQAKRRQKKRLAGEHQPALSLMDHTYRFLQGNLNHSAGAQDMLLQTMAEWSIDVAVVAEPYFVPPADDCWFGDVDGLAAIHIRRTAMVPPLAMVTRGPGIVAVQLENIVVIGVYFSPNRPTVEFERFLDGLEVIARHLAPRSVILAGDFNAKSVAWGSPFTDARGRLLEEWAVAVGLCIVNRGSIATCVRWTGESIVDLTFASSPVARRILGWRVVVGAESLSDHRYIRYDLSAPAPTPAAGARGVDPPQSASRSFPRWALKLLNRELLVEASMVAAWAPKRPQPVDVETEVEWFRGAMHRICDASMPRVGSRHSGRRQSPWWSPEIARLRAVSIRASRRCTRHRRRRRLRRDEPVAFAEEEARLHREYRAAKDALRLAIRRAKEQNMERLLEALEADPWGSPYKLVRGKLRPWAPSMTERLQPQQLRDIVSALIPQEREGFVPPAMGGPSEIVDGQAPAEVPRITEAELRVAVVKMTARDTAPGPDGVHGRVLALALGALGDRLLELYNGCLESGRFPSLWRTGRLVLLRKEGRPVDTAAGYRPIVLLDEAGKLLERILAARIVRHLVGVGPDLSAEQYGFREGRSTVDAILRVRSLSDKAVSRGGVALAVSLDIANAFNTLPWTVIGGALERHGVPLYLRRLVGSYLGARSVVCTGYGGTLHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLRVICYADDTLVVARGDDFRESARLATAGVALVVGRIRRLGLDVALNKSEALWFHGPRRAPAVDTHIVVGGVRIGVGVQLKYLGLVLDSRWAFRAHFAELVPRLMGTAGSLSRLLPNIGGKDQVVRRLYAGVVRSMALYGAPVWAEPRNRATMARFLRRPQRTVAIRVIRGYRTVSFEAACVLAGTPPWELEAESLAADYRWRSELRARGVARVPESELRARKAHSRRSVLESWSRRLANPTWGLRTVEAVYPVFDDWVNRGEGRLTFRLVQVLTGHGCFGKYLRRIGAEPTTRCHHCGHDLDTAEHTLAVCPAWEVQRRVLVAKIGPDLSLPGVVASMLGSDESWKAMLDFCECTISQKEAAGRVRESSPHYAETRRRRAGGRDRGRIRDLAP

Uniprot

A0A0J7KQK3 A0A0J7N0R3 A0A0J7KFH2 A0A0J7NFZ0 A0A0J7KRB8 A0A3S2LNH8 + More
J9KJG8 X1WZ64 J9JWJ3 J9KM84 X1WJY4 J9KT61 J9KWM9 J9K6F0 A0A139W940 A0A139W9B3 A0A139WAH4 A0A139W939

Pubmed

18362917 19820115

EMBL

LBMM01004272 KMQ92618.1 LBMM01012412 KMQ86235.1 LBMM01008278 KMQ89009.1 + More
LBMM01005474 KMQ91485.1 LBMM01003988 KMQ92922.1 RSAL01003504 RVE40273.1 ABLF02041886 ABLF02011183 ABLF02041884 ABLF02013358 ABLF02013361 ABLF02054869 ABLF02018942 ABLF02041885 ABLF02011238 ABLF02009073 ABLF02030702 ABLF02042963 ABLF02011927 ABLF02012448 ABLF02012450 ABLF02012455 ABLF02012460 KQ972691 KXZ75806.1 KQ972544 KXZ75869.1 KQ971388 KYB24913.1 KXZ75807.1

Proteomes

UP000036403 UP000283053 UP000007819 UP000007266

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01421   Reprolysin
PF00098   zf-CCHC

Interpro

IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf
IPR036691   Endo/exonu/phosph_ase_sf
IPR005135   Endo/exonuclease/phosphatase
IPR000477   RT_dom
IPR024079   MetalloPept_cat_dom_sf
IPR001590   Peptidase_M12B
IPR000663   Natr_peptide

SUPFAM

SSF56219 SSF56219 + More
SSF57756 SSF57756

Gene 3D

3.60.10.10 3.40.390.10

ProteinModelPortal

A0A0J7KQK3 A0A0J7N0R3 A0A0J7KFH2 A0A0J7NFZ0 A0A0J7KRB8 A0A3S2LNH8 + More
J9KJG8 X1WZ64 J9JWJ3 J9KM84 X1WJY4 J9KT61 J9KWM9 J9K6F0 A0A139W940 A0A139W9B3 A0A139WAH4 A0A139W939

PDB

1WDU E-value=6.98916e-12, Score=177

KEGG

101737183 no KO assigned | (RefSeq) uncharacterized LOC101737183

GO

GO:0008270 GO:0003676 GO:0003964 GO:0016021 GO:0005179 GO:0005576 GO:0005840 GO:0006412 GO:0015935 GO:0003906 GO:0005634 GO:0006285 GO:0019104 GO:0003824

Length:

1764

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02343

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00006

outside

1 - 1764

Pi

0

Theta

0

Tajima's D

0

CLR

595.569182

CSRT

0

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree