Gene

KWMTBOMO10686

Pre Gene Modal

BGIBMGA008248

Annotation

PREDICTED:_mitochondrial_ribosomal_protein_S12_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr18(-):468599-478789      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 3.983

CDS

ATGAATCTTATAAGAAGAGGAATGTCGCTCCTATCTCTCGGCTTCAAGACACAGTGCACAACTCTCAGAGCAATTCAACCGGCGGCTTCAACAAAACCAATCGTGCCATCGTCCAGTTTTCTAACAGCCCAAACTGGCCTCATCTCGAGGGCAATGGCGTCTTTGGCCCAGATGCACAGAACTGGACCTCACATTAAGAAGAGGAAATCTAGGAATCCGCTTAACGGGAATCCCTTCGCTAAGGGTGTCGTTCTAAAGACCGTAATAAAAAAACCTAAGAAACCGAACTCCGCGAACCGTAAATGCGTTCTGGTAAGATTGTCAAACGGCAAGGAAATGGTGGCGTATATACCCGGCATCGGACATAACTTACAGGAACACAACGTGGTCCTGGTCAGAGTGGGAAGGTTAAAAGATTGTCCCGGCGTGAAACTAAAGTGTGTGCGAGGCAAGCACGACTTGTCGCACGTCATCAAACAGAAGGCGTAG

Protein

MNLIRRGMSLLSLGFKTQCTTLRAIQPAASTKPIVPSSSFLTAQTGLISRAMASLAQMHRTGPHIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRLSNGKEMVAYIPGIGHNLQEHNVVLVRVGRLKDCPGVKLKCVRGKHDLSHVIKQKA

Similarity

Belongs to the universal ribosomal protein uS12 family.

Uniprot

I4DL57   A0A2A4J7F8   A0A2H1VD25   A0A212FJE3   A0A0N1I8P7   A0A2H1VW99   + More
A0A2W1BDI9   A0A1Y1LIX5   A0A3S2NWX9   J3JXW0   B4NPG9   A0A1S4FIT8   A0A1W4XAM1   A0A0P6J6N0   A0A023F8G3   A0A182XBM8   A0A182FQL4   A0A182K424   Q29J58   B4GTA9   A0A336M378   A0A2P8XN05   W5J3J5   A0A224XZR1   A0A069DNS7   A0A182KM52   F5HMC6   A0A182U216   A0A182VQW8   A0A182T7L1   B4L2H8   A0A0Q9WM19   A0A1Q3G2U1   D1ZZ96   A0A0V0G7L1   A0A2M4AW26   B4JXE8   A0A182IXC4   A0A3B0KYV5   A0A1B6KVC9   A0A1L8EDR1   A0A1L8EDQ3   B4Q161   B0WMF1   B3P921   A0A023EG00   A0A0P4VVU7   R4G4M0   R4UW77   W8AKD4   A0A2M4CW49   A0A2M4C2X4   A0A1B6I9N1   A0A1B6FDT8   A0A1L8DRK6   A0A1B6GB11   A0A1B6BYG8  

Pubmed

22651552    22118469    26354079    28756777    28004739    22516182    + More
23537049    17994087    26999592    25474469    15632085    29403074    20920257    23761445    26334808    20966253    12364791    14747013    17210077    18362917    19820115    17550304    24945155    27129103    24495485   

EMBL

AK402025    BAM18647.1    NWSH01002900    PCG67343.1    ODYU01001897    SOQ38749.1    + More
AGBW02008274    OWR53856.1    KQ460326    KPJ15698.1    ODYU01004813    SOQ45078.1    KZ150415    PZC70960.1    GEZM01054489    JAV73614.1    RSAL01000123    RVE46643.1    BT128082    KB631829    AEE63043.1    ERL86563.1    CH964291    EDW86409.2    GDUN01000006    JAN95913.1    GBBI01001110    JAC17602.1    CH379063    EAL32444.1    CH479190    EDW25779.1    UFQT01000484    SSX24704.1    PYGN01001681    PSN33383.1    ADMH02002134    ETN58401.1    GFTR01002324    JAW14102.1    GBGD01003414    JAC85475.1    AAAB01008987    EGK97448.1    CH933810    EDW06854.1    KRF93842.1    GFDL01000944    JAV34101.1    KQ971338    EFA01882.1    GECL01002142    JAP03982.1    GGFK01011644    MBW44965.1    CH916376    EDV95424.1    OUUW01000019    SPP89318.1    GEBQ01024594    GEBQ01005217    JAT15383.1    JAT34760.1    GFDG01001962    JAV16837.1    GFDG01001951    JAV16848.1    CM000162    EDX01368.1    DS231997    EDS31008.1    CH954183    EDV45626.1    GAPW01005807    JAC07791.1    GDKW01000409    JAI56186.1    ACPB03018759    GAHY01001240    JAA76270.1    KC740677    AGM32501.1    GAMC01017470    GAMC01017467    GAMC01017464    GAMC01017460    JAB89085.1    GGFL01005372    MBW69550.1    GGFJ01010535    MBW59676.1    GECU01024065    GECU01002879    JAS83641.1    JAT04828.1    GECZ01021485    JAS48284.1    GFDF01004992    JAV09092.1    GECZ01010306    JAS59463.1    GEDC01031228    JAS06070.1   

Proteomes

UP000218220    UP000007151    UP000053240    UP000283053    UP000030742    UP000007798    + More
UP000192223    UP000076407    UP000069272    UP000075881    UP000001819    UP000008744    UP000245037    UP000000673    UP000075882    UP000007062    UP000075902    UP000075920    UP000075901    UP000009192    UP000007266    UP000001070    UP000075880    UP000268350    UP000002282    UP000002320    UP000008711    UP000015103   

Pfam

PF00164   Ribosom_S12_S23

Interpro

IPR005679   Ribosomal_S12_bac        + More
IPR012340   NA-bd_OB-fold       
IPR006032   Ribosomal_S12/S23       

SUPFAM

SSF50249   SSF50249       

CDD

cd03368  Ribosomal_S12

ProteinModelPortal

I4DL57   A0A2A4J7F8   A0A2H1VD25   A0A212FJE3   A0A0N1I8P7   A0A2H1VW99   + More
A0A2W1BDI9   A0A1Y1LIX5   A0A3S2NWX9   J3JXW0   B4NPG9   A0A1S4FIT8   A0A1W4XAM1   A0A0P6J6N0   A0A023F8G3   A0A182XBM8   A0A182FQL4   A0A182K424   Q29J58   B4GTA9   A0A336M378   A0A2P8XN05   W5J3J5   A0A224XZR1   A0A069DNS7   A0A182KM52   F5HMC6   A0A182U216   A0A182VQW8   A0A182T7L1   B4L2H8   A0A0Q9WM19   A0A1Q3G2U1   D1ZZ96   A0A0V0G7L1   A0A2M4AW26   B4JXE8   A0A182IXC4   A0A3B0KYV5   A0A1B6KVC9   A0A1L8EDR1   A0A1L8EDQ3   B4Q161   B0WMF1   B3P921   A0A023EG00   A0A0P4VVU7   R4G4M0   R4UW77   W8AKD4   A0A2M4CW49   A0A2M4C2X4   A0A1B6I9N1   A0A1B6FDT8   A0A1L8DRK6   A0A1B6GB11   A0A1B6BYG8  

PDB

6NF8     E-value=3.48292e-30,     Score=323

KEGG

733035    K02950 small subunit ribosomal protein S12 | (RefSeq) mRpS12; mitochondrial ribosomal protein S12

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0006412   GO:0015935   GO:0003735   GO:0005840   GO:0005622   GO:0003906   GO:0005634   GO:0006285   GO:0019104   GO:0003824  

PANTHER

PTHR11652  

Length:

162

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01909

Exp number, first 60 AAs:

0.01632

Total prob of N-in:

0.13115

outside

1  -  162

 

 

Pi

246.634173

Theta

210.310958

Tajima's D

0.335286

CLR

0.754028

CSRT

0.468026598670067

Interpretation

Uncertain