Silkworm Genome Informatics Database

Gene

KWMTBOMO10685

Pre Gene Modal

BGIBMGA008267

Annotation

PREDICTED:_transcription_factor_VBP-like_[Bombyx_mori]

Location

Bomo_Chr18(+):462160-463441 View in EpiBrowser

Transcription factor

TF_bZIP

Location in the cell

Nuclear Reliability : 3.992

CDS

ATGGCTCTTTGGACACCTTACGCAGACGACACTGCGTTGGATTTGACCACAACTCGTCTGAAAGAAGAGACCGAGTACACAAGGCTAGATGAGCCGCGGACACCAGAGGTTCCATACGTCGTCTATCCTCAGCCGATTTACGCTAATCCAGCGCATATTTCTCCAATATCGGCAAACAGTTACATATCTTACGAAGCCCAACAACACGATCAAATGATTTATCAAAGTTATCCGCGCACAAATTTGTCGCCCCCAATATCGCCGGAACAATACGAGAATATGAGGAAAAGAAGTTTGAGCATGGTGGATTCTGATTATTTATCTGATGACCCTGACTTTCAAGAGTTCGAACGTGTCGCCCTGAGAACGATGGCGGAAAAAAATGGAGGGACTTTATTGGGCAATAATCCTCGTATGCGCAGAACTGTACAGTCGAAGAACGAGACGGCTGATGAAACATACCGCAGACAGCGAGAGAGAAACAATTACGCGGCAAAACAGAGCCGCGACAGAAGAAAGCTCAGAGAAATTCATTTGGCGTTGAAAGTGAATTACTTAAGAAAAGAGCTATCAAGTTTGAAAGCTGTTTTGGCATCTAGGAGATGTGTCAAATGTCAACAACTGTGCTCGTGTTAA

Protein

MALWTPYADDTALDLTTTRLKEETEYTRLDEPRTPEVPYVVYPQPIYANPAHISPISANSYISYEAQQHDQMIYQSYPRTNLSPPISPEQYENMRKRSLSMVDSDYLSDDPDFQEFERVALRTMAEKNGGTLLGNNPRMRRTVQSKNETADETYRRQRERNNYAAKQSRDRRKLREIHLALKVNYLRKELSSLKAVLASRRCVKCQQLCSC

Uniprot

A0A2A4J7E6 A0A2A4J5U5 A0A2W1B716 A0A0L7LKE3 A0A194PCJ5 A0A0N1IPI2 + More
A0A2W1B2G7 A0A2A4J7B7 A0A0N1PIE8 A0A194PCR3 A0A2H1WH95 W5N0T8 A0A3Q1FRG1 A0A3Q1GD89 A0A3Q1FRI0 A0A1A8IUL2 A0A1A8JYB8

Pubmed

28756777 26227816 26354079

EMBL

NWSH01002900 PCG67342.1 PCG67341.1 KZ150415 PZC70961.1 JTDY01000800 + More
KOB75834.1 KQ459606 KPI91006.1 KQ460326 KPJ15699.1 PZC70962.1 PCG67340.1 KPJ15700.1 KPI91007.1 ODYU01008340 SOQ51844.1 AHAT01038485 AHAT01038486 AHAT01038487 AHAT01038488 HAED01014625 SBR01070.1 HAEE01005058 SBR25078.1

Proteomes

UP000218220 UP000037510 UP000053268 UP000053240 UP000018468 UP000257200 + More

Pfam

PF07716 bZIP_2

Interpro

IPR004827   bZIP        + More
IPR040223   PAR_bZIP
IPR029829   HLF

ProteinModelPortal

A0A2A4J7E6 A0A2A4J5U5 A0A2W1B716 A0A0L7LKE3 A0A194PCJ5 A0A0N1IPI2 + More
A0A2W1B2G7 A0A2A4J7B7 A0A0N1PIE8 A0A194PCR3 A0A2H1WH95 W5N0T8 A0A3Q1FRG1 A0A3Q1GD89 A0A3Q1FRI0 A0A1A8IUL2 A0A1A8JYB8

KEGG

105841599 no KO assigned | (RefSeq) transcription factor VBP-like

GO

GO:0006357 GO:0003700 GO:0016021 GO:0005634 GO:0000977 GO:0006355 GO:0043565 GO:0008270 GO:0006457 GO:0003906 GO:0006285 GO:0019104 GO:0003824

PANTHER

PTHR11988 PTHR11988:SF28

Length:

211

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00836

Exp number, first 60 AAs:

0.00717

Total prob of N-in:

0.06405

outside

1 - 211

Pi

224.155818

Theta

166.454998

Tajima's D

0.626059

CLR

0.00044

CSRT

0.556022198890056

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics