Silkworm Genome Informatics Database

Gene

KWMTBOMO10664

Pre Gene Modal

BGIBMGA008208

Annotation

PREDICTED:_DNA_repair_protein_XRCC1_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr18(-):211189-216885 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.263

CDS

ATGCCGCGCGTGAAAATTGATTACGTCGTTAGCTTCAGCAGCGAGGATCCTGATCACCCAGCTAACAATCTGTTGGCATTGGAAGTGAACAAGAAGAAATGGCTGTGCTGCAAGGGAGAGTCTTCCTGCTCAGTCGTACTTCAGCTGGCCAAGGCAGTCCAGATATCATCAGTCTATCTTGGTGTGCATCATGCTGCTACTGTGGAGGTGCTCGTTGGAAGATCTGAAAAACCTGATGAACCCTTTGAGGTACTGGTCCCCAGCAGCGTGATGTTGTCGCCCAGCGAGTCCCGGCGCGCCGAGGGCGTGCAGCGCGTGCGGGCGTGGCGCGGCGACCAGCTGGCGGCCGCGGCCCGGGGGCGCCGCTGGGACCGCCTGCGGGTCGTGTGCGCGCAGCCCTACAACAGGCACTGCCAGTTCGGCCTCTCGTTCTTGCACATCGACGAGCCCGGGGACGGACCCCCGCCCGCGCCGCCGCGCCCCCTCGCCCTGGACACCTTCTCGTCGGACGAGGAAGAGTTCAAACCTGGGGAATTATTCGCTAAATACTACACCCAGAAGGATAGTCCGCTGAAACTGGGGGACGATAAAACTAGCAGCCCGGCGAGTACAGAATCCCAAATACACAAGGCGACGTCCCGCGCGCTCCGCAACGTTCCCGGGGACTCCCCCGCCGCCTCCCCCGGCCTCAGCGCGGCGGCCACACTCCGACAGAGCAAACAGAACAGGCCGGCCGGGCGGCGCCGCTCCGACAGCGACGGGGACGCTCGGATGCACGATGAAGAGGACACCAGACACCATGCAAAAATAGACCAAACCGTTAATAGACATAAGGGTGACAAGATGACCGATGACAATAGCGCGGGGGACCCGAAAGAAGTCCAGAAAAATATAGACAATATATCATCGAGAGCAAAGCGGGTGAAGCGAGACGACAGCGCCGGGACCGCGCCCGCCCCCCGGGGACAGCTCGCGGACGTGCTGCGCGGCGTGCGCTTCGTGCTGAGCGGCTACCAGAACCCGCTCCGCCAAGAGTTGCGCCGCGAGGGGGTCGCGCTGGGGGCGCGCTGGGAGCCCGTCTGGGGGCCCGCCTGCACGCATCTCATATGCGCGTTCCCCAACACGCCGAAGCTGCAGGAGGTGCGGCGCGTGGCGGGCGGCGCCGTGCCCGCCGTGCGCGCGGACTGGCTGCGAGCGTGCCGCCGCGCGCGCCGCCGCGTGCCCTGGCGCCCCTACGCCACGGAGCCGCACCAGCGCACCGCACCACCACACGCTGCAGAAACTGACGAGTCAGCGGACACCGACGAGGAAGTGCGGGACCGCGGCCGGGCGCCGAGCCCCCCCGCCGGCGCGACAGGGTCGAGGGGGGGCAGCGGCGAGCCCGACGTGCAGTTCGTGTGCGACGAACGAGTCAAGGCGTCGCTCGCGGTCGAGTCGGACTCGGACGAGACCGACGCTGGGGCCGACAGCGGCGCCGAGCACGCGATAGACGACAGCAAGTCGCTGCCGGCGTTCTTTGAGGGAGTAACGTTCGCGGTGGAGGCCGGGGACACACAACTGCGGGCGCGCTGCTGGCGCTACCTGCGGGCCTACGGGGGGCGCGTGCTGCAGAAGTCTCAGCTGGATGAGGACAGCCGCGTAGATTACGTGGTGTGCGACGACGGCGCCGCGCCGCGAATCAAGGGCCGCGCCGTCACTGCAGCCTGGCTGTGGAAATGTCATCAACAACGAAAACTGTGTCCAATATAA

Protein

MPRVKIDYVVSFSSEDPDHPANNLLALEVNKKKWLCCKGESSCSVVLQLAKAVQISSVYLGVHHAATVEVLVGRSEKPDEPFEVLVPSSVMLSPSESRRAEGVQRVRAWRGDQLAAAARGRRWDRLRVVCAQPYNRHCQFGLSFLHIDEPGDGPPPAPPRPLALDTFSSDEEEFKPGELFAKYYTQKDSPLKLGDDKTSSPASTESQIHKATSRALRNVPGDSPAASPGLSAAATLRQSKQNRPAGRRRSDSDGDARMHDEEDTRHHAKIDQTVNRHKGDKMTDDNSAGDPKEVQKNIDNISSRAKRVKRDDSAGTAPAPRGQLADVLRGVRFVLSGYQNPLRQELRREGVALGARWEPVWGPACTHLICAFPNTPKLQEVRRVAGGAVPAVRADWLRACRRARRRVPWRPYATEPHQRTAPPHAAETDESADTDEEVRDRGRAPSPPAGATGSRGGSGEPDVQFVCDERVKASLAVESDSDETDAGADSGAEHAIDDSKSLPAFFEGVTFAVEAGDTQLRARCWRYLRAYGGRVLQKSQLDEDSRVDYVVCDDGAAPRIKGRAVTAAWLWKCHQQRKLCPI

Uniprot

H9JFB1 A0A212F2K3 A0A0N8CQS0 A0A0P6I3H6 A0A2Y9GCS4 A0A0P5SVK2 + More

Pubmed

19121390 22118469

EMBL

BABH01042045 BABH01042046 BABH01042047 AGBW02010729 OWR47959.1 GDIP01108087 + More
LRGB01001265 JAL95627.1 KZS13154.1 GDIQ01026559 JAN68178.1 GDIP01141980 JAL61734.1

Proteomes

UP000005204 UP000007151 UP000076858 UP000248481

PRIDE

H9JFB1

Pfam

PF01834   XRCC1_N        + More
PF12738   PTCB-BRCT
PF16589   BRCT_2
PF00533   BRCT

Interpro

IPR002706   Xrcc1_N        + More
IPR036420   BRCT_dom_sf
IPR001357   BRCT_dom
IPR008979   Galactose-bd-like_sf

SUPFAM

SSF52113 SSF52113 + More
SSF49785 SSF49785

Gene 3D

2.60.120.260 3.40.50.10190

CDD

cd00027 BRCT

ProteinModelPortal

H9JFB1 A0A212F2K3 A0A0N8CQS0 A0A0P6I3H6 A0A2Y9GCS4 A0A0P5SVK2 + More

PDB

3K77 E-value=8.02213e-19, Score=232

KEGG

101737558 K10803 DNA-repair protein XRCC1 | (RefSeq) DNA repair protein XRCC1

PATHWAY

03410 Base excision repair - Bombyx mori (domestic silkworm)

GO

GO:0003684 GO:0005634 GO:0000012 GO:0005515 GO:0006457 GO:0003906 GO:0006285 GO:0019104 GO:0003824

Length:

582

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01358

Exp number, first 60 AAs:

0.00931

Total prob of N-in:

0.00224

outside

1 - 582

Pi

251.036992

Theta

191.973166

Tajima's D

0.826057

CLR

0.000077

CSRT

0.612019399030049

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics