Gene

KWMTBOMO10663  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008209

Annotation

eukaryotic_translation_initiation_factor_3_subunit_F_[Bombyx_mori]

Location

Bomo_Chr18(-):205420-210265      View in EpiBrowser

Full name

Eukaryotic translation initiation factor 3 subunit F       + More
Eukaryotic translation initiation factor 3 subunit F-1      

Alternative Name

Eukaryotic translation initiation factor 3 subunit 5
Eukaryotic translation initiation factor 3 subunit 5-1

Location in the cell

Cytoplasmic   Reliability : 1.383 Extracellular   Reliability : 1.004

CDS

ATGGCTCTCAATATTAGTGTGAAGGTCCATCCTGTTGTTTTATTTCAAATTGTGGACGCATACGAACGTCGAAATGCAGATTCTCACAGAGTTATCGGCACCTTATTGGGCACGAGCGACAAAGGAGTGGTGGAAGTAACCAACTGCTTCTGCGTGCCACACAAAGAACATGCCGATCAAGTCGAAGCGGAACTTAATTACGCGATGGATGTTTACGAGCTGAACAGAAGAGTCAATTCCTCTGAAAGTATTGTTGGTTGGTGGGCGACTGGCAATGAAGTAACCAACCACTCCTCTGTTATACACGAGTATTATTCCCGTGAATGCCGTGAGCCTGTCCATGTTACTCTGGACACTTCGCTGGCTGGAGGTCGAATGGGTTTACGTGCATATGTTTGTGTACCATTGGGAGTGCCAAATGGAAAGCAAGGTTGCATGTTCACTCCTGTAGATGTCACTCTCACATGCTATGAACCTGAGATTGTAGGTCTACAAGTGTGCCAGAAGACTGTGTCTGGTGGAGGTCGCGGGTCGAGCGGCGTGGCCGCGGGCTCGGACCTGGCGCAGGTGATGTCGGCGGCGAGCTCGCTGGAGTCGCTGCTGGAGCAGGCGCTGCAGTACGCGGACGGAGCGGCCGCCGGAGCACCGGCCGACGCGGAGGCGGGCCGTGCCCTATTGCAGCTCGCACATTCCGCACCTGACCTTGCCAAGGACACCTTCTCAGATGCCTTCGCCTCCAGCGTCAAAGATCTGCTCATGGTGGTGACGTTAGCACAGTTGATCAAGACCCAACTCCAACTTAATGAGAAGCTAACTTTATTGACCTCCCAGTGA

Protein

MALNISVKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQGCMFTPVDVTLTCYEPEIVGLQVCQKTVSGGGRGSSGVAAGSDLAQVMSAASSLESLLEQALQYADGAAAGAPADAEAGRALLQLAHSAPDLAKDTFSDAFASSVKDLLMVVTLAQLIKTQLQLNEKLTLLTSQ

Description

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.

Subunit

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex.
Component of the eukaryotic translation initiation factor 3 (eIF-3) complex. The eIF-3 complex interacts with pix.

Similarity

Belongs to the eIF-3 subunit F family.

Keywords

Complete proteome   Cytoplasm   Initiation factor   Protein biosynthesis   Reference proteome  

Feature

chain  Eukaryotic translation initiation factor 3 subunit F

Uniprot

A3QVV1   A0A212F2J6   S4P2K6   A0A3S2N7T7   A0A194PCL2   A0A2A4K1B0   + More
A0A2H1WCK4   A0A2W1BF55   H9JFB2   A0A1Y1LGL5   D2A0J7   A0A336KJ72   A0A067QJE4   A0A0N1IPR3   N6TPN9   A0A1W4WU21   A0A1J1HK59   U5EXA5   A0A182N6Z2   A0A182VYM8   H6WAQ6   A0A182U9Z8   A0A182LG41   A0A182XHF3   A0A182HTZ3   Q7QD36   A0A2J7PGD0   T1E286   T1DFG1   A0A2M4BW01   A0A2M3ZFI6   A0A2M4A113   A0A182FA90   Q1HR47   A0A182JUL1   W5J565   A0A182RNE3   A0A182JGB7   A0A023EMI5   A0A084VUX9   A0A1A9WWX9   D3TMC1   A0A1A9YQH4   A0A1A9VWQ9   A0A1B0A180   A0A1L8DSB2   A0A182M310   A0A182PR01   A0A182STJ8   A0A1B0AXY9   B4NJR8   A0A1Q3F7Z1   A0A1L8EE90   B4JGX4   A0A1B0EXJ8   A0A0L0C3G0   B4LZ60   A0A1I8MHS6   B0X2G0   A0A0M4EK92   A0A1I8P4M9   A0A0K8TQX1   A0A2A3EMZ9   A0A0M8ZWD5   A0A088A223   B3M123   W8C8Q4   A0A1W4V216   B4QVL3   B4I3S1   Q9VN50   B3P239   B4PUG5   K7JAP7   A0A034WE70   A0A0K8WEM1   B4KBI4   A0A182QWX9   Q295I4   B4GDU3   A0A1B0G815   E2BHA5   A0A0J7L536   A0A0A9Y6C6   H6WAR3   E1ZWK5   T1GIH2   A0A026X2P9   A0A0L7QUH5   A0A1B6GKI5   A0A171A976   E0W3F6   A0A2P8ZAB2   A0A1B6MG45   A0A154PSA9   A0A1B6JGE7   A0A3B0JRH5   R4FQ42   A0A069DRT8   A0A224XHN0  

Pubmed

22118469    23622113    26354079    28756777    19121390    28004739    + More
18362917    19820115    24845553    23537049    23055932    20966253    12364791    24330624    17204158    17510324    20920257    23761445    24945155    26483478    24438588    20353571    17994087    26108605    25315136    26369729    24495485    10731132    12537572    12537569    20075255    25348373    15632085    20798317    25401762    26823975    25244985    24508170    30249741    20566863    29403074    26334808   

EMBL

DQ443287    DQ868530    AGBW02010729    OWR47960.1    GAIX01011965    JAA80595.1    + More
RSAL01000234    RVE43780.1    KQ459606    KPI91026.1    NWSH01000244    PCG78055.1    ODYU01007730    SOQ50767.1    KZ150191    PZC72405.1    BABH01042044    GEZM01059414    JAV71490.1    KQ971338    EFA02515.1    UFQS01000445    UFQT01000445    SSX04012.1    SSX24377.1    KK853289    KDR08893.1    KQ460326    KPJ15717.1    APGK01056917    KB741277    KB632155    ENN71200.1    ERL89191.1    CVRI01000002    CRK86846.1    GANO01001035    JAB58836.1    JQ042682    AEZ67824.1    APCN01000594    AAAB01008859    NEVH01025635    PNF15393.1    GALA01000964    JAA93888.1    GAMD01003146    JAA98444.1    GGFJ01008043    MBW57184.1    GGFM01006500    MBW27251.1    GGFK01001183    MBW34504.1    DQ440247    CH477554    ADMH02002183    ETN58000.1    JXUM01038482    GAPW01003055    KQ561167    JAC10543.1    KXJ79487.1    ATLV01017076    KE525148    KFB41773.1    EZ422573    ADD18849.1    GFDF01004817    JAV09267.1    AXCM01005934    JXJN01005462    CH964272    GFDL01011355    JAV23690.1    GFDG01001772    JAV17027.1    CH916369    AJWK01013638    JRES01000955    KNC26791.1    CH940650    DS232288    CP012526    ALC45490.1    GDAI01001298    JAI16305.1    KZ288215    PBC32576.1    KQ435821    KOX72470.1    CH902617    GAMC01002829    JAC03727.1    CM000364    CH480821    AE014297    AY118972    CH954181    CM000160    AAZX01000979    AAZX01014509    GAKP01006345    JAC52607.1    GDHF01033112    GDHF01010216    GDHF01002762    JAI19202.1    JAI42098.1    JAI49552.1    CH933806    AXCN02000314    CM000070    CH479182    CCAG010000155    GL448287    EFN84874.1    LBMM01000716    KMQ97658.1    GBHO01016981    GBRD01010828    GDHC01012320    GDHC01005376    JAG26623.1    JAG54996.1    JAQ06309.1    JAQ13253.1    JQ042684    AEZ67831.1    GL434853    EFN74442.1    CAQQ02200244    KK107020    QOIP01000006    EZA62552.1    RLU21270.1    KQ414735    KOC62312.1    GECZ01006805    JAS62964.1    GEMB01001352    JAS01804.1    DS235882    EEB20162.1    PYGN01000127    PSN53426.1    GEBQ01005060    JAT34917.1    KQ435127    KZC14805.1    GECU01009355    JAS98351.1    OUUW01000007    SPP83603.1    ACPB03019118    GAHY01000604    JAA76906.1    GBGD01002498    JAC86391.1    GFTR01004429    JAW11997.1   

Proteomes

UP000005204    UP000007151    UP000283053    UP000053268    UP000218220    UP000007266    + More
UP000027135    UP000053240    UP000019118    UP000030742    UP000192223    UP000183832    UP000075884    UP000075920    UP000075903    UP000075902    UP000075882    UP000076407    UP000075840    UP000007062    UP000235965    UP000069272    UP000008820    UP000075881    UP000000673    UP000075900    UP000075880    UP000069940    UP000249989    UP000030765    UP000091820    UP000092443    UP000078200    UP000092445    UP000075883    UP000075885    UP000075901    UP000092460    UP000007798    UP000001070    UP000092461    UP000037069    UP000008792    UP000095301    UP000002320    UP000092553    UP000095300    UP000242457    UP000053105    UP000005203    UP000007801    UP000192221    UP000000304    UP000001292    UP000000803    UP000008711    UP000002282    UP000002358    UP000009192    UP000075886    UP000001819    UP000008744    UP000092444    UP000008237    UP000036403    UP000076408    UP000000311    UP000015102    UP000053097    UP000279307    UP000053825    UP000009046    UP000245037    UP000076502    UP000268350    UP000015103   

PRIDE

A3QVV1    H9JFB2    Q1HR47    B4NJR8    B0X2G0    A0A088A223    + More
B3M123    Q9VN50    B3P239    B4PUG5    B4GDU3   

Pfam

PF13012   MitMem_reg        + More
PF01398   JAB

Interpro

IPR000555   JAMM/MPN+_dom        + More
IPR037518   MPN       
IPR024969   Rpn11/EIF3F_C       
IPR027531   eIF3f       
IPR016181   Acyl_CoA_acyltransferase       

SUPFAM

SSF55729   SSF55729       

CDD

cd08064  MPN_eIF3f

ProteinModelPortal

A3QVV1   A0A212F2J6   S4P2K6   A0A3S2N7T7   A0A194PCL2   A0A2A4K1B0   + More
A0A2H1WCK4   A0A2W1BF55   H9JFB2   A0A1Y1LGL5   D2A0J7   A0A336KJ72   A0A067QJE4   A0A0N1IPR3   N6TPN9   A0A1W4WU21   A0A1J1HK59   U5EXA5   A0A182N6Z2   A0A182VYM8   H6WAQ6   A0A182U9Z8   A0A182LG41   A0A182XHF3   A0A182HTZ3   Q7QD36   A0A2J7PGD0   T1E286   T1DFG1   A0A2M4BW01   A0A2M3ZFI6   A0A2M4A113   A0A182FA90   Q1HR47   A0A182JUL1   W5J565   A0A182RNE3   A0A182JGB7   A0A023EMI5   A0A084VUX9   A0A1A9WWX9   D3TMC1   A0A1A9YQH4   A0A1A9VWQ9   A0A1B0A180   A0A1L8DSB2   A0A182M310   A0A182PR01   A0A182STJ8   A0A1B0AXY9   B4NJR8   A0A1Q3F7Z1   A0A1L8EE90   B4JGX4   A0A1B0EXJ8   A0A0L0C3G0   B4LZ60   A0A1I8MHS6   B0X2G0   A0A0M4EK92   A0A1I8P4M9   A0A0K8TQX1   A0A2A3EMZ9   A0A0M8ZWD5   A0A088A223   B3M123   W8C8Q4   A0A1W4V216   B4QVL3   B4I3S1   Q9VN50   B3P239   B4PUG5   K7JAP7   A0A034WE70   A0A0K8WEM1   B4KBI4   A0A182QWX9   Q295I4   B4GDU3   A0A1B0G815   E2BHA5   A0A0J7L536   A0A0A9Y6C6   H6WAR3   E1ZWK5   T1GIH2   A0A026X2P9   A0A0L7QUH5   A0A1B6GKI5   A0A171A976   E0W3F6   A0A2P8ZAB2   A0A1B6MG45   A0A154PSA9   A0A1B6JGE7   A0A3B0JRH5   R4FQ42   A0A069DRT8   A0A224XHN0  

PDB

6FEC     E-value=3.37912e-54,     Score=533

KEGG

733116    K03249 translation initiation factor 3 subunit F | (RefSeq) eIF3-S5, eIF3f; eukaryotic translation i

PATHWAY

03013    RNA transport - Bombyx mori (domestic silkworm)

GO

GO:0033290   GO:0003743   GO:0005852   GO:0001732   GO:0016282   GO:0071541   GO:0006413   GO:0031369   GO:0045747   GO:0016021   GO:0004843   GO:0016579   GO:0005737   GO:0005515   GO:0006457   GO:0003906   GO:0005634   GO:0006285   GO:0019104   GO:0003824  

PANTHER

PTHR10540:SF6  

Subcellular location

Cytoplasm  

Length:

277

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00656

Exp number, first 60 AAs:

0.00111

Total prob of N-in:

0.03856

outside

1  -  277

 

 

Pi

232.521965

Theta

152.068639

Tajima's D

1.647765

CLR

0.401996

CSRT

0.818709064546773

Interpretation

Uncertain